ID DQ641703; SV 1; circular; genomic DNA; STD; VRL; 2744 BP. XX AC DQ641703; XX DT 03-MAY-2007 (Rel. 91, Created) DT 21-DEC-2007 (Rel. 94, Last updated, Version 2) XX DE Alternanthera yellow vein virus isolate Zin segment DNA-A, complete DE sequence. XX KW . XX OS Alternanthera yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2744 RX DOI; 10.1099/vir.0.83236-0. RX PUBMED; 18089756. RA Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J.; RT "Molecular characterization of begomoviruses and DNA satellites from RT Vietnam: additional evidence that the New World geminiviruses were present RT in the Old World prior to continental separation"; RL J. Gen. Virol. 89(Pt 1):312-326(2008). XX RN [2] RP 1-2744 RA Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.; RT ; RL Submitted (18-MAY-2006) to the INSDC. RL Institute of Health and Biomedical Innovation, Queensland University of RL Technology, 2 George Street, Brisbane, Queensland 4001, Australia XX DR MD5; d216d87268715a68e4ad62cd68e204b9. XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism="Alternanthera yellow vein virus" FT /segment="DNA-A" FT /host="Zinnia elegans, Asteraceae; flower" FT /isolate="Zin" FT /mol_type="genomic DNA" FT /country="Viet Nam:Hue" FT /note="acronym: AlYVV" FT /db_xref="taxon:337826" FT gene 153..500 FT /gene="AV2" FT CDS 153..500 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:A5H1C1" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:A5H1C1" FT /protein_id="ABG26078.1" FT /translation="MWDPLLNPFPQTVHGFRCMLSVKYLQAVEETYAPDTLGADLIREL FT IAVIRATNYVEACSRYDHFIKRIEGTTSAQLRQPYGSPCYCPHCPCHSKTAVVEPSHVS FT QAKVVPNVQKP" FT gene 313..1083 FT /gene="AV1" FT CDS 313..1083 FT /codon_start=1 FT /gene="AV1" FT /product="CP protein" FT /db_xref="GOA:Q4GZI8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q4GZI8" FT /protein_id="ABG26077.1" FT /translation="MSKRAADMIISSSGSRVRRRLNFDSPMARRATAPIVRATRKQQWS FT SRPMYRKPRLYRMYRSPDVPYGCEGPCKVQSFEKKHDVSHTGTLLCVSDVTRGSGITHR FT VGKRFCIKSIYIIGKIWMDENIKSKNHTNTVMFWLVRDRRPVTTPYGFGEAFNMYDNEP FT STATIKNDLRDRLQVLHRFSATVTGGQYASKEQAMIKRFWRINNHVVYNHQEKAAYENH FT TENALVLYMACTHASNPVYATLKIRIYFYDSVMN" FT gene complement(1080..1484) FT /gene="AC3" FT CDS complement(1080..1484) FT /codon_start=1 FT /gene="AC3" FT /product="REn protein" FT /db_xref="GOA:A5H1B7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A5H1B7" FT /protein_id="ABG26081.1" FT /translation="MDSRTGEHITAAQAENGVYTWEITNPLYFKIIKHDSRPFLREHDI FT ITVQIQFNYNLREALGIHKCFLTCQIWTRLQPQTLTFLRVFKTQIMKYLDNLGVICLNN FT VIRAINHVLWNALHHTLYVNFNHIIKFNIY" FT gene complement(1225..1629) FT /gene="AC2" FT CDS complement(1225..1629) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP protein" FT /db_xref="GOA:A5H1B8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5H1B8" FT /protein_id="ABG26080.1" FT /translation="MRPSSPSNSHCTQLPIKVQHRLAKRKPRRRRVDLRCGCSLYISID FT CHNYGFTHRGTHHCSSGGEWRVYLGNNQSPVFQDHQTRQQTIPTGTRHHYSSDTVQLQP FT AGGFGDTQMFSDLPDLDSLTTSDIDFLKGL" FT gene complement(1532..2617) FT /gene="AC1" FT CDS complement(1532..2617) FT /codon_start=1 FT /gene="AC1" FT /product="rep protein" FT /db_xref="GOA:A5H1B9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5H1B9" FT /protein_id="ABG26079.1" FT /translation="MRQPGRFRLNRKNFFLTYSQCPISKEEALEQLINIQTPVSKRFIR FT VCRELHEDGNPHLHALVQFEGKFDLKNPRFFDLQSPNSSSQYHCFITDAKSSSDVKAYI FT EKDGDILDWGTFQIDGRSARGGQQTANDAYARAINTGNKEQALDVIKELAPKDYVLQFH FT NLNANLERIFMPPTQEYISPFNCSSFDQVPEEIEEWAADNVMSAAARPWRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHIDLSPRVYSNEAWYNIIDDVDPHYVKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKNIGLKNWAIKNATFVTIEQPL FT YSASHQSPTQASQEETSQTEG" FT gene complement(2170..2466) FT /gene="AC4" FT CDS complement(2170..2466) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5H1C0" FT /protein_id="ABG26082.1" FT /translation="MRMETLISMLLCNSRANSTSRIQDSSTYSHPTPPPNTTVSSPMRS FT PVQTLRHTSRKTETYLTGVPSRLTAGLQEGDNRRQTMLTQEQLTQEIRNRLLM" XX SQ Sequence 2744 BP; 709 A; 571 C; 631 G; 833 T; 0 other; accgatggcc aaaaaaaaat ttatgccggc cccacctggc agcttttgtc tgccactaga 60 caatcccgtc caatcagaat tcagcctgaa agcttaaata aaattggcgc ctctttaaat 120 gcttggccgc tacgtttagt gcgctgtcca ctatgtggga tccgcttttg aacccgtttc 180 cccagacggt gcacggcttt cgttgcatgc tttctgtaaa gtatttacag gccgttgaag 240 aaacatacgc tcctgatact ttaggagctg atttaattag ggagttaatt gcagtcatta 300 gggcaactaa ttatgtcgaa gcgtgcagca gatatgatca tttcatcaag cggatcgagg 360 gtacgacgtc ggctcaactt cgacagccct atggctcgcc gtgctactgc ccccattgtc 420 cgtgccactc gaaaacagca gtggtcgagc cgtcccatgt atcgcaagcc aaggttgtac 480 cgaatgtaca gaagccctga tgtgccttat ggctgtgagg gtccgtgtaa ggtccagtca 540 tttgaaaaaa aacatgacgt tagtcatact ggcactttgt tgtgtgtctc tgatgttact 600 agaggtagtg ggattacgca tagagtaggg aagcggttct gtatcaagtc aatttacatc 660 atagggaaga tatggatgga tgagaacatt aagtccaaga atcatactaa cacggttatg 720 ttctggttag ttagggatcg tcgcccagtt acaacgcctt atggctttgg tgaagcgttt 780 aatatgtatg acaatgagcc ctctacagca actatcaaga acgatcttcg tgatcgtttg 840 caggtgttac acaggttttc tgccacagtt actgggggtc agtatgcatc taaggagcag 900 gcgatgatca agcgtttctg gaggattaac aaccatgtag tgtacaacca tcaggagaag 960 gcagcatatg aaaatcatac tgagaatgcc ttagttttgt atatggcttg tactcatgct 1020 agcaatcctg tgtatgctac gctgaaaatt aggatatatt tctatgactc tgtaatgaat 1080 taataaatgt tgaattttat tatatgattg aagtttacat acaaagtatg gtgcaatgca 1140 ttccataata catgatttat tgctctaatt acattgttaa gacaaattac accaagatta 1200 tctaaatact tcatgatctg ggtcttaaag acccttaaga aagtcaatgt ctgaggttgt 1260 aagcgagtcc agatctggca agtcagaaaa catttgtgta tccccaaagc ctcccgcagg 1320 ttgtagttga actgtatctg aactgtaatg atgtcgtgtt cccgtaggaa tggtctgctg 1380 tcgtgtttga tgatcttgaa atacagggga ttggttattt cccaggtata cacgccattc 1440 tccgcctgag ctgcagtgat gtgttcccct gtgcgtgaat ccatagttgt gacagtcaat 1500 ggagatgtat agtgaacagc cgcaacgcag atcaaccctc cgtctgcgag gtttcctctt 1560 ggctagcctg tgttggactt tgatgggaag ctgagtacag tggctgttcg atggtgacga 1620 aggtcgcatt ctttatggcc cagtttttta gacctatgtt tttctcctca tcaaggaact 1680 ctttatagga ggatgttgga ccaggattgc agaggaagat tgttgggatc ccgcctttaa 1740 tttgaacggg cttcccgtat ttagtattgg actgccaatc cctttgggcc cccatgaatt 1800 ccttgaaatg tttcacataa tgaggatcaa catcgtctat tatgttatac caggcctcat 1860 tgctgtaaac cctaggacta aggtcaatat gaccgcatag gtaattatgt ggacctaatg 1920 atctagccca cattgttttc ccagtcctac tgtcaccttc tatgactata cttattggtc 1980 tccatggccg cgcagcggca gacatgacat tgtctgcagc ccattcctca atctcttcag 2040 ggacctgatc aaacgatgaa caattaaatg gactaatgta ttcttgagtt ggaggcatga 2100 atatgcgctc cagattagca tttaaattat gaaattgtaa tacataatcc ttaggagcta 2160 actccttaat tacatcaaga gcctgttcct tatttcctgt gttaattgct cttgcgtaag 2220 catcgtttgc cgtctgttgt ccccctcttg cagacctgcc gtcaatctgg aaggtacccc 2280 agtcaagtat gtctccgtct ttctcgatgt atgccttaac gtctgaactg gacttcgcat 2340 cggtgatgaa acagtggtat tgggaggagg agttgggtga ctgtaggtcg aagaatcttg 2400 gattcttgag gtcgaatttg ccctcgaatt gcacaagagc atggagatga gggtttccat 2460 cctcatgtag ttctctacaa accctaatga atctcttgct tacaggagtt tgtatattga 2520 tcaattgttc tagtgcctct tctttagaga tagggcactg tgagtaagtt aggaagaagt 2580 tcttcctatt taatctgaat ctcccaggct ggcgcatgat gacgtaggta tcccccgatt 2640 ggagctctct tcaaacttcc tagtcaatgg gtggatgggt ggatgttata tagtccggat 2700 atttccggaa taaaaaattt ttttttggcc atcgcaataa tatt 2744 //