ID DQ641699; SV 1; circular; genomic DNA; STD; VRL; 2751 BP. XX AC DQ641699; XX DT 03-MAY-2007 (Rel. 91, Created) DT 21-DEC-2007 (Rel. 94, Last updated, Version 2) XX DE Ludwigia yellow vein Vietnam virus segment DNA-A, complete sequence. XX KW . XX OS Ludwigia yellow vein Vietnam virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2751 RX DOI; 10.1099/vir.0.83236-0. RX PUBMED; 18089756. RA Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J.; RT "Molecular characterization of begomoviruses and DNA satellites from RT Vietnam: additional evidence that the New World geminiviruses were present RT in the Old World prior to continental separation"; RL J. Gen. Virol. 89(Pt 1):312-326(2008). XX RN [2] RP 1-2751 RA Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.; RT ; RL Submitted (18-MAY-2006) to the INSDC. RL Institute of Health and Biomedical Innovation, Queensland University of RL Technology, 2 George Street, Brisbane, Queensland 4001, Australia XX DR MD5; f4ab4643e5ac94070c48e450234238c3. XX FH Key Location/Qualifiers FH FT source 1..2751 FT /organism="Ludwigia yellow vein Vietnam virus" FT /segment="DNA-A" FT /host="primrose willow (Ludwigia octovalvis, Onagraceae); FT weed" FT /mol_type="genomic DNA" FT /country="Viet Nam:Hochiminh" FT /note="acronym: LuYVVNV" FT /db_xref="taxon:390444" FT gene 147..497 FT /gene="AV2" FT CDS 147..497 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:A5H198" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:A5H198" FT /protein_id="ABG26054.1" FT /translation="MWDPLEHEFPETLHGFRCMLAIKYLQTVADTYAPDTVGYDLIRDL FT ISIVRAGNYVEATRRYSHFNTRLQSTSPVELRFPRSEPCCCPHCPRHNPKECLDVQAHV FT SQAQTVQNVQKP" FT gene 307..1080 FT /gene="AV1" FT CDS 307..1080 FT /codon_start=1 FT /gene="AV1" FT /product="CP protein" FT /db_xref="GOA:A5H193" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A5H193" FT /protein_id="ABG26053.1" FT /translation="MSKRPADIVISTPVSKVRRRLNFDSPGVSRVAARTVLGITRKNAW FT TYRPTYRKPRLYRMYRSPDVPRGCEGPCKVQSFEKKHDVGHTGTLLCVSDVTRGNGLTH FT RTGKRFCIKSIYILGKLWMDENIKTKNHTNTVMFWLVRDRRPVTTPYGFGEAFNMYDNE FT PSTATIKNDLRDRLQVLHRFQATLTGGQYACKEQVMVKRFWKINNHVVYNHQEKAAYEN FT HTENALILYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1077..1481) FT /gene="AC3" FT CDS complement(1077..1481) FT /codon_start=1 FT /gene="AC3" FT /product="REn protein" FT /db_xref="GOA:A5H194" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A5H194" FT /protein_id="ABG26057.1" FT /translation="MDFRTGEYITATQAESGVYTWTVRNPLYFKITKHLVRPFLRDHDV FT ITIQVQFNYNLRKALGMHQCFLICQIWTRLRPQTGRFLRVFNVQCMKYLDNLGIISINN FT VIRAITHVLYDVLEGTIDAQLTHIIKYNLY" FT gene complement(1222..1629) FT /gene="AC2" FT CDS complement(1222..1629) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP protein" FT /db_xref="GOA:A5H195" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5H195" FT /protein_id="ABG26056.1" FT /translation="MQNSSSSQSHCTQVPIKVQHRIAKKKSIRRRRVDLPCGCSYFFPI FT TCANHGFSHRGIHHCNSGREWRLYLDGQKSPLFQDYQAPGEAIPEGSRRNNNPSPVQLQ FT PEESTGDAPVFPDLPDLDSFTSSDWAFLKSI" FT gene complement(1529..2617) FT /gene="AC1" FT CDS complement(1529..2617) FT /codon_start=1 FT /gene="AC1" FT /product="rep protein" FT /db_xref="GOA:A5H196" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5H196" FT /protein_id="ABG26055.1" FT /translation="MPRAGRFSIKAKNYFLTYPHCSLSKEEALSQLQALNTPTNKKYIK FT ICRELHEDGSPHLHVLVQFEGKYNCTNPRFFDLVSPSRSAHFHPNLQGAKSSSDVKSYL FT EKDGDTLDWGEFQIDGRSARGGQQTANDAYAQALNSGSKSEALNVIKELAPKDFVLQFH FT NLNANLDRIFAPPVEVFVSPFLASSFDRVPEELECWAEENVRDAAARPWRPVSIVVEGE FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSALKSWALKNAEFVFLSEPL FT YSGTHQSPAQNSQEEVNTPEES" FT gene complement(2170..2460) FT /gene="AC4" FT CDS complement(2170..2460) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5H197" FT /protein_id="ABG26058.1" FT /translation="MGALISMCSCSSKGSTTARIHDSSTWYPQVGAHISIRTYRGLNRV FT QMSSPTWRRTETPSIGESFRSTDDLQEGDNRQPMTLTPRRLTAAVSQRLLM" XX SQ Sequence 2751 BP; 700 A; 641 C; 644 G; 766 T; 0 other; accggatggc cgcgcaaatt tttcccccct ttcactttag tgggtccccc gcactatttt 60 tggtcggcca atgagaatac gcgctcaaag cttagataac cgtgtggtcc cgccataaat 120 aacttcccct cgaaggtaaa ttcaaaatgt gggatccgtt ggagcacgag tttccggaaa 180 ctcttcacgg tttccgttgt atgctcgcta tcaaatacct gcagactgta gcggatacgt 240 atgctccgga tacggtaggt tacgatctta ttcgtgattt aatttctatt gtacgagctg 300 gcaactatgt cgaagcgacc cgccgatata gtcatttcaa cacccgtctc caaagtacgt 360 cgccggttga acttcgattc ccccggagtg agccgtgttg ctgcccgcac tgtcctcggc 420 ataacccgaa agaatgcctg gacgtacagg cccacgtatc gcaagcccag actgtacaga 480 atgtacagaa gccctgatgt ccctcgtggt tgtgagggtc catgtaaggt tcagtcgttc 540 gagaagaaac atgatgttgg tcatactggt acattattat gtgtgtccga tgttactcgt 600 ggaaatgggt taacccatcg cactgggaag aggttctgta ttaagtctat ttacattctg 660 ggtaagttat ggatggatga gaacatcaag acgaagaatc acacgaacac agtcatgttc 720 tggttagtta gggataggcg tcctgtcaca acgccatatg ggttcggcga ggcattcaac 780 atgtacgaca atgagcccag tacagcaact atcaagaacg atcttcgtga ccgtctgcag 840 gtgctgcaca ggtttcaagc cactctcaca ggaggtcagt acgcgtgcaa ggagcaggta 900 atggtgaaga ggttctggaa gatcaacaat cacgtcgtct acaaccatca ggagaaggct 960 gcttacgaga atcacactga gaacgcatta atattgtata tggcatgtac tcatgcctct 1020 aaccccgtgt atgctacact gaagatccgc atctacttct atgattcagt ccagaattaa 1080 taaagattat attttattat gtgtgtcaat tgagcatcaa ttgtgccctc cagtacatcg 1140 tacaatacat gagttatagc cctaattaca ttgttgatac taataatgcc taagttatct 1200 aaatacttca tacattgaac attaaatact cttaagaaac gcccagtctg aggacgtaaa 1260 cgagtccaga tctggcagat caggaaacac tggtgcatcc ccagtgcttt cctcaggttg 1320 tagttgaact ggacttggat tgttattacg tcgtgatccc tcaggaatgg cctcaccagg 1380 tgcttggtaa tcttgaaata gaggggattt ctgaccgtcc aggtatagac gccactctct 1440 gcctgagttg cagtgatgta ttccccggtg cgaaaatcca tggttggcac aggtaattgg 1500 aaagaagtat gagcagccgc acggtagatc aactctcctc cggcgtattg acttcttctt 1560 ggctattctg tgctggactt tgatgggtac ctgagtacag tggctctgag aggaagacga 1620 attctgcatt cttcagtgcc caggacttta gagctgaatt cttatcctcg tccagatact 1680 ccttatatga tgatgttggg ccaggattgc atagaaagat tgtcggaatt ccccctttaa 1740 tttgaatggg cttcccgtac ttggtattgc tttgccaatc cctctgggcc cccatgaatt 1800 ccttaaagtg ctttagataa tgggggtcca catcatcgat gacgttatac catgcgtcat 1860 tagagtagat cttggggctc aagtctagat gcccacaaag gtaattatgt gggcccaatg 1920 atctggccca cattgtcttc ccagttctac tctctccttc taccactata ctcaccggtc 1980 gccaaggccg cgcagcggca tccctgacgt tctcctccgc ccaacattca agttcttccg 2040 gaactcgatc gaatgaagaa gctaaaaaag gagaaacaaa aacctctact ggaggtgcaa 2100 aaatcctatc taaattagca tttaaattat gaaattgtaa aacaaaatct ttaggagcta 2160 actccttaat tacattaaga gcctctgact tactgccgct gttaagcgcc tgggcgtaag 2220 cgtcattggc tgtctgttgt ccccctcttg cagatcgtcc gtcgatctga aactctcccc 2280 aatcgagggt gtctccgtcc ttctccaggt aggacttgac atctgaactc gatttagccc 2340 cctgtaagtt cggatggaaa tgtgcgctcc tacttgggga taccaggtcg aagaatcgtg 2400 gattcgtgca gttgtacttc ccttcgaact gcacgagcac atggagatga gggctcccat 2460 cttcgtgaag ctctctgcag atcttgatgt atttcttgtt ggtcggagtg tttagggctt 2520 gcaattggga aagtgcttct tctttggaga gagagcagtg tggataagtg aggaaatagt 2580 tcttggcttt aatagaaaat ctgccggctc ttggcatttt ggaatcgggg ggcactcaaa 2640 gtcctgtgca attgggggaa cggggggaca atttatatgt gcccccctaa tggcattctt 2700 gaaatttcct ttgcaatttc aaattccaaa agcggccatc cgtataatat t 2751 //