ID DQ641696; SV 1; circular; genomic DNA; STD; VRL; 2753 BP. XX AC DQ641696; XX DT 03-MAY-2007 (Rel. 91, Created) DT 21-DEC-2007 (Rel. 94, Last updated, Version 2) XX DE Sida yellow vein Vietnam virus segment DNA-A, complete sequence. XX KW . XX OS Sida yellow vein Vietnam virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2753 RX DOI; 10.1099/vir.0.83236-0. RX PUBMED; 18089756. RA Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J.; RT "Molecular characterization of begomoviruses and DNA satellites from RT Vietnam: additional evidence that the New World geminiviruses were present RT in the Old World prior to continental separation"; RL J. Gen. Virol. 89(Pt 1):312-326(2008). XX RN [2] RP 1-2753 RA Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.; RT ; RL Submitted (18-MAY-2006) to the INSDC. RL Institute of Health and Biomedical Innovation, Queensland University of RL Technology, 2 George Street, Brisbane, Queensland 4001, Australia XX DR MD5; 31a18727a6e6ed8fbfbfe966bdb6379b. XX FH Key Location/Qualifiers FH FT source 1..2753 FT /organism="Sida yellow vein Vietnam virus" FT /segment="DNA-A" FT /host="Arrow leaf (Sida rhombiforlia, Malvaceae); weed" FT /mol_type="genomic DNA" FT /country="Viet Nam:Hanoi" FT /note="acronym: SiYVVNV" FT /db_xref="taxon:390441" FT gene 133..483 FT /gene="AV2" FT CDS 133..483 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:A5H176" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A5H176" FT /protein_id="ABG26036.1" FT /translation="MWDPLLNEFPETVHGLRCMLAVKYCHLLEQTYAPDTVGYDLVRDL FT ISVIRARDYVEATRRYSHFNARIQGTSTAELRQPRHEPCCCPHCPRHKSKAIVDLQAHE FT SQTQNVQDVQKP" FT gene 293..1066 FT /gene="AV1" FT CDS 293..1066 FT /codon_start=1 FT /gene="AV1" FT /product="CP protein" FT /db_xref="GOA:A5H177" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5H177" FT /protein_id="ABG26035.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPGMSRAAAPTVLVTNRKRSW FT TYRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSYEARHDIAHVGKVLCVSDVTRGNGLTH FT RVGKRFCVKSVYVLGKVWMDENIKKKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNE FT PSTATVKNDNRDRFQVLRRFQATVTGGEHACKEQALVRKFMKINNHVTYNHQEAAKYDN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1063..1467) FT /gene="AC3" FT CDS complement(1063..1467) FT /codon_start=1 FT /gene="AC3" FT /product="REn protein" FT /db_xref="GOA:A5H178" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A5H178" FT /protein_id="ABG26039.1" FT /translation="MDFRTGEPITATQAENGAYIWTVNNPLYFKITQHDERPFSTKHDV FT ITVQVQFNYNLRKALGIHQCFLICQIWTRLRPQTWRFLRVFKYQCMKYLNNLGVISINN FT VIRAMNHVLYDKLEGTIEAHFSYIIKFNLY" FT gene complement(1208..1615) FT /gene="AC2" FT CDS complement(1208..1615) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP protein" FT /db_xref="GOA:A5H179" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5H179" FT /protein_id="ABG26038.1" FT /translation="MQNSSPSRSHCTQVPIKVQHRTAKKRPIRRRRVDLPCGCSYYFGL FT NCASHGFSHRGTHHCNSGREWRLYLDGQQSPIFQDHPARREAVFDETRRNNSPSPVQLQ FT PAESVGDTPVFSDLPNLDSFTSSDLAFLKSI" FT gene complement(1515..2603) FT /gene="AC1" FT CDS complement(1515..2603) FT /codon_start=1 FT /gene="AC1" FT /product="rep protein" FT /db_xref="GOA:A5H180" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5H180" FT /protein_id="ABG26037.1" FT /translation="MPPPRRFRLSAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKKYIK FT ICRELHEDGSPHLHVLIQFEGKYVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQSANDAYAAALNTGSKSEALNIIRELAPKDYVLQFH FT NLNANLDRIFAPPIEVFVCPFLSSSFDQVPEELECWVSENVRDAAARPWRPISIVIEGE FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSAIRDWALKNAEFFTLTEPL FT YSSTHQSPTPDSEEEAHSEASR" FT gene complement(2156..2446) FT /gene="AC4" FT CDS complement(2156..2446) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5H175" FT /protein_id="ABG26040.1" FT /translation="MGALISTCLSSSRENTSARITDSSTWYPQPGQHISIRTYRELNPA FT PTSSPTSIRTETPSSGASFRSTDDLQEGANNQPMTLTPQHLTQAVSQRLLI" XX SQ Sequence 2753 BP; 706 A; 578 C; 673 G; 796 T; 0 other; accggatggc cgcgcgattt tttagggtgg tccccgcacg cgcttttgtc ttccaatcaa 60 aacgctccct caaagctagt ttaaaaaaaa cccgctataa atacttaggg actaagttat 120 gaaggaaata aaatgtggga tccactgttg aacgagtttc cagaaaccgt tcacggtcta 180 cggtgtatgc ttgcggtgaa atactgtcat ctattggagc agacgtacgc gccggatacg 240 gtgggttacg atcttgtcag agacttgata tccgtcatac gagctcgtga ctatgtcgaa 300 gcgacccgcc gatatagtca tttcaacgcc cgcatccaag gtacgtcgac ggctgaactt 360 cgacagccca ggcatgagcc gtgctgctgc ccccactgtc ctcgtcacaa atcgaaagcg 420 atcgtggact tacaggccca tgaatcgcaa acccagaatg tacaggatgt acagaagccc 480 tgatgttcct cgtggatgtg aaggcccgtg taaggtccag tcgtatgaag cccgtcatga 540 tatagcccat gtaggtaagg tattgtgtgt gtctgatgtc acgcgtggta atgggttgac 600 ccatcgagtt ggtaagaggt tttgtgttaa gtccgtgtac gtgttgggta aggtctggat 660 ggatgaaaac atcaagaaga aaaatcacac taacactgtt atgttttttt tagttcgtga 720 tcggagaccg tttgggactc ctcaggattt cggtcaggtg tttaatatgt atgataatga 780 gcctagtacg gcaactgtga agaacgataa tagggatcgt ttccaggtat tgcgtcgatt 840 tcaggcaacg gtcactggtg gagagcacgc gtgtaaggag caagcccttg ttaggaagtt 900 tatgaaaatt aacaatcatg taacctataa tcatcaggag gcagcgaagt atgataacca 960 tactgagaat gcgttgttat tgtatatggc atgtactcat gctagtaatc cagtgtatgc 1020 tacgttgaaa atcaggatct acttctatga ttctgttcag aattaataaa gattgaattt 1080 tattatatat gaaaaatgag cctcaattgt gccctcgagt ttatcgtaca gtacatgatt 1140 cattgcccta attacattgt taatgctaat tactcctaaa ttgttcaaat acttcatgca 1200 ttgatactta aatactctta agaaacgcca agtctgagga cgtaaacgag tccagatttg 1260 gcagatcaga aaacactggt gtatccccaa cgctttccgc aggttgtagt tgaactggac 1320 ttggactgtt attacgtcgt gtttcgtcga aaacggcctc tcgtcgtgct gggtgatctt 1380 gaaatatagg ggattgttga ccgtccagat ataggcgcca ttctctgcct gagttgcagt 1440 gatgggttcc cctgtgcgaa aatccatgac ttgcgcaatt gagtccaaaa taataagagc 1500 aaccgcaggg aagatcaacg cgacgcctcc gaatgggcct cttcttcgct gtccggtgtt 1560 ggactttgat gggtacttga gtacaatggc tccgtgaggg tgaagaattc tgcattcttt 1620 aatgcccagt ctctgattgc tgaattcttt tcctcgtcca agtactcttt atacgatgaa 1680 gttggtcctg gattgcaaag gaagattgtc gggatacctc ctttaatttg aattggtttc 1740 ccgtacttcg tgttgctttg ccagtccctt tgggccccca tgaattcctt gaaatgtttc 1800 aggtagtggg ggtcgacgtc atcgattacg ttgtaccacg catcattgct gtagaccttt 1860 gggcttaggt ccagatgtcc acacagatag ttgtgtgggc ctagagatcg tgcccacatc 1920 gtcttcccgg ttctactctc accctctatg actatactga tcggtcgcca aggccgcgca 1980 gcggcatccc tcacgttctc tgacacccag cattcaagtt cttctggaac ttggtcgaaa 2040 gaagaagaaa gaaatggaca aacaaaaacc tctataggag gtgcaaaaat cctatctaaa 2100 ttagcattta aattatgaaa ctgtaaaaca taatctttgg gagctaattc cctaattata 2160 ttaagagcct ctgacttact gcctgtgtta agtgctgcgg cgtaagcgtc attggctgat 2220 tgttggcccc ctcttgcaga tcgtccgtcg atctgaaact cgccccactc gagggtgtct 2280 ccgtccttat cgatgtagga cttgacgtcg gagctggatt tagctccctg tatgttcgga 2340 tggaaatgtg ctgacctggt tggggatacc aggtcgaaga atctgttatt cgtgcagacg 2400 tattttccct cgaactggat aagcacgtgg agatgagggc tcccatcttc gtgaagttct 2460 ctgcagatct tgatgtattt tttatttgtg ggggtgttta ggttttgtag ttgggaaagt 2520 gcctcctctt tggtgagaga gcactgtgga taagtgagga aataattttt agcagataac 2580 ctaaaacgac gcggaggagg catattgcgc gtcgttttgt atcggtgaca atcaactctg 2640 tggaatgaat tggtgactgg tgtacaatat atagttgtca ccaaatggca ttctcgtaaa 2700 tcctcataga aattcaaaat tcgaattggg aaagcggcca tccgtataat att 2753 //