ID DQ641257; SV 1; linear; genomic RNA; STD; VRL; 7310 BP. XX AC DQ641257; XX DT 20-JUN-2006 (Rel. 88, Created) DT 22-APR-2008 (Rel. 95, Last updated, Version 3) XX DE Seneca valley virus isolate SVV-001 polyprotein gene, complete cds. XX KW . XX OS Senecavirus A OC Viruses; Riboviria; Picornavirales; Picornaviridae; Senecavirus. XX RN [1] RP 1-7310 RX DOI; 10.1099/vir.0.83570-0. RX PUBMED; 18420805. RA Hales L.M., Knowles N.J., Reddy P.S., Xu L., Hay C., Hallenbeck P.L.; RT "Complete genome sequence analysis of Seneca Valley virus-001, a novel RT oncolytic picornavirus"; RL J. Gen. Virol. 89(Pt 5):1265-1275(2008). XX RN [2] RP 1-7310 RA Hales L.M., Reddy P.S., Hay C., Hallenbeck P.L.; RT ; RL Submitted (16-MAY-2006) to the INSDC. RL Biology, Neotropix, Inc., 371 Phoenixville Pike, Malvern, PA 19355, USA XX DR MD5; 4e259e2a498270de59d91f282305ce1e. DR EuropePMC; PMC1900287; 17392358. DR EuropePMC; PMC2224395; 17942560. DR EuropePMC; PMC2374260; 18391430. DR EuropePMC; PMC2572565; 18940610. DR EuropePMC; PMC2615758; 19102772. DR EuropePMC; PMC2706813; 19552824. DR EuropePMC; PMC2885027; 18343847. DR EuropePMC; PMC3126232; 21325406. DR EuropePMC; PMC4466507; 26069962. DR EuropePMC; PMC4879313; 27030489. DR EuropePMC; PMC4918151; 27314580. DR EuropePMC; PMC4918180; 27314645. DR EuropePMC; PMC4963487; 27225408. DR EuropePMC; PMC5261858; 17971529. DR EuropePMC; PMC5419577; 28475630. DR EuropePMC; PMC5537662; 28671611. DR EuropePMC; PMC5668534; 29097458. DR EuropePMC; PMC5727462; 29069411. DR EuropePMC; PMC6119248; 30170587. DR EuropePMC; PMC6434928; 30372584. XX FH Key Location/Qualifiers FH FT source 1..7310 FT /organism="Senecavirus A" FT /isolate="SVV-001" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:390157" FT CDS 667..7212 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q155Z9" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="InterPro:IPR037080" FT /db_xref="PDB:3CJI" FT /db_xref="UniProtKB/Swiss-Prot:Q155Z9" FT /protein_id="ABG23522.1" FT /translation="MQNSHFSFDTASGTFEDVTGTKVKIVEYPRSVNNGVYDSSTHLEI FT LNLQGEIEILRSFNEYQIRAAKQQLGLDIVYELQGNVQTTSKNDFDSRGNNGNMTFNYY FT ANTYQNSVDFSTSSSASGAGPGNSRGGLAGLLTNFSGILNPLGYLKDHNTEEMENSADR FT VTTQTAGNTAINTQSSLGVLCAYVEDPTKSDPPSSSTDQPTTTFTAIDRWYTGRLNSWT FT KAVKTFSFQAVPLPGAFLSRQGGLNGGAFTATLHRHFLMKCGWQVQVQCNLTQFHQGAL FT LVAMVPETTLDVKPDGKAKSLQELNEEQWVEMSDDYRTGKNMPFQSLGTYYRPPNWTWG FT PNFINPYQVTVFPHQILNARTSTSVDINVPYIGETPTQSSETQNSWTLLVMVLVPLDYK FT EGATTDPEITFSVRPTSPYFNGLRNRYTAGTDEEQGPIPTAPRENSLMFLSTLPDDTVP FT AYGNVRTPPVNYLPGEITDLLQLARIPTLMAFERVPEPVPASDTYVPYVAVPTQFDDRP FT LISFPITLSDPVYQNTLVGAISSNFANYRGCIQITLTFCGPMMARGKFLLSYSPPNGTQ FT PQTLSEAMQCTYSIWDIGLNSSWTFVVPYISPSDYRETRAITNSVYSADGWFSLHKLTK FT ITLPPDCPQSPCILFFASAGEDYTLRLPVDCNPSYVFHSTDNAETGVIEAGNTDTDFSG FT ELAAPGSNHTNVKFLFDRSRLLNVIKVLEKDAVFPRPFPTQEGAQQDDGYFCLLTPRPT FT VASRPATRFGLYANPSGSGVLANTSLDFNFYSLACFTYFRSDLEVTVVSLEPDLEFAVG FT WFPSGSEYQASSFVYDQLHVPFHFTGRTPRAFASKGGKVSFVLPWNSVSSVLPVRWGGA FT SKLSSATRGLPAHADWGTIYAFVPRPNEKKSTAVKHVAVYIRYKNARAWCPSMLPFRSY FT KQKMLMQSGDIETNPGPASDNPILEFLEAENDLVTLASLWKMVHSVQQTWRKYVKNDDF FT WPNLLSELVGEGSVALAATLSNQASVKALLGLHFLSRGLNYTDFYSLLIEKCSSFFTVE FT PPPPPAENLMTKPSVKSKFRKLFKMQGPMDKVKDWNQIAAGLKNFQFVRDLVKEVVDWL FT QAWINKEKASPVLQYQLEMKKLGPVALAHDAFMAGSGPPLSDDQIEYLQNLKSLALTLG FT KTNLAQSLTTMINAKQSSAQRVEPVVVVLRGKPGCGKSLASTLIAQAVSKRLYGSQSVY FT SLPPDPDFFDGYKGQFVTLMDDLGQNPDGQDFSTFCQMVSTAQFLPNMADLAEKGRPFT FT SNLIIATTNLPHFSPVTIADPSAVSRRINYDLTLEVSEAYKKHTRLNFDLAFRRTDAPP FT IYPFAAHVPFVDVAVRFKNGHQNFNLLELVDSICTDIRAKQQGARNMQTLVLQSPNEND FT DTPVDEALGRVLSPAAVDEALVDLTPEADPVGRLAILAKLGLALAAVTPGLIILAVGLY FT RYFSGSDADQEETESEGSVKAPRSENAYDGPKKNSKPPGALSLMEMQQPNVDMGFEAAV FT AKKVVVPITFMVPNRPSGLTQSALLVTGRTFLINEHTWSNPSWTSFTIRGEVHTRDEPF FT QTVHFTHHGIPTDLMMVRLGPGNSFPNNLDKFGLDQMPARNSRVVGVSSSYGNFFFSGN FT FLGFVDSITSEQGTYARLFRYRVTTYKGWCGSALVCEAGGVRRIIGLHSAGAAGIGAGT FT YISKLGLIKALKHLGEPLATMQGLMTELEPGITVHVPRKSKLRKTTAHAVYKPEFEPAV FT LSKFDPRLNKDVDLDEVIWSKHTANVPYQPPLFYTYMSEYAHRVFSFLGKDNDILTVKE FT AILGIPGLDPMDPHTAPGLPYAINGLRRTDLVDFVNGTVDAALAVQIQKFLDGDYSDHV FT FQTFLKDEIRPSEKVRAGKTRIVDVPSLAHCIVGRMLLGRFAAKFQSHPGFLLGSAIGS FT DPDVFWTVIGAQLEGRKNTYDVDYSAFDSSHGTGSFEALISHFFTVDNGFSPALGPYLR FT SLAVSVHAYGERRIKITGGLPSGCAATSLLNTVLNNVIIRTALALTYKEFEYDMVDIIA FT YGDDLLVGTDYDLDFNEVARRAAKLGYKMTPANKGSVFPPTSSLSDAVFLKRKFVQNND FT GLYKPVMDLKNLEAMLSYFKPGTLLEKLQSVSMLAQHSGKEEYDRLMHPFADYGAVPSH FT EYLQARWRALFD" XX SQ Sequence 7310 BP; 1743 A; 2053 C; 1705 G; 1809 T; 0 other; tttgaaatgg ggggctgggc cctgatgccc agtccttcct ttccccttcc ggggggttaa 60 ccggctgtgt ttgctagagg cacagagggg caacatccaa cctgcttttg cggggaacgg 120 tgcggctccg attcctgcgt cgccaaaggt gttagcgcac ccaaacggcg cacctaccaa 180 tgttattggt gtggtctgcg agttctagcc tactcgtttc tcccccgacc attcactcac 240 ccacgaaaag tgtgttgtaa ccataagatt taacccccgc acgggatgtg cgataaccgt 300 aagactggct caagcgcgga aagcgctgta accacatgct gttagtccct ttatggctgc 360 aagatggcta cccacctcgg atcactgaac tggagctcga ccctccttag taagggaacc 420 gagaggcctt cgtgcaacaa gctccgacac agagtccacg tgactgctac caccatgagt 480 acatggttct cccctctcga cccaggactt ctttttgaat atccacggct cgatccagag 540 ggtggggcat gacccctagc atagcgagct acagcgggaa ctgtagctag gccttagcgt 600 gccttggata ctgcctgata gggcgacggc ctagtcgtgt cggttctata ggtagcacat 660 acaaatatgc agaactctca tttttctttc gatacagcct ctggcacctt tgaagatgta 720 accggaacaa aagtcaagat cgttgaatac cccagatcgg tgaacaatgg tgtttacgat 780 tcgtctactc atttggagat actgaaccta cagggtgaaa ttgaaatttt aaggtctttc 840 aatgaatacc aaattcgcgc cgccaaacaa caactcggac tggacatcgt gtacgaacta 900 cagggtaatg ttcagacaac gtcaaagaat gattttgatt cccgtggcaa taatggtaac 960 atgaccttca attactacgc aaacacttat cagaattcag tagacttctc gacctcctcg 1020 tcggcgtcag gcgccggacc cgggaactcc cggggcggat tagcgggtct cctcacaaat 1080 ttcagtggaa tcttgaaccc tcttggctac ctcaaagatc acaacaccga agaaatggaa 1140 aactctgctg atcgagtcac aacgcaaacg gcgggcaaca ctgccataaa cacgcaatca 1200 tcattgggtg tgttgtgtgc ctacgttgaa gacccgacca aatctgatcc tccgtccagc 1260 agcacagatc aacccaccac cactttcact gccatcgaca ggtggtacac tggacgtctc 1320 aattcttgga caaaagctgt aaaaaccttc tcttttcagg ccgtcccgct tcccggggcc 1380 tttctgtcta ggcagggagg cctcaacgga ggggccttca cagctaccct acatagacac 1440 tttttgatga agtgcgggtg gcaggtgcag gtccaatgta atttgacaca attccaccaa 1500 ggcgctcttc ttgttgccat ggttcctgaa accacccttg atgtcaagcc cgacggtaag 1560 gcaaagagct tacaggagct gaatgaagaa cagtgggtgg aaatgtctga cgattaccgg 1620 accgggaaaa acatgccttt tcagtctctt ggcacatact atcggccccc taactggact 1680 tggggtccca atttcatcaa cccctatcaa gtaacggttt tcccacacca aattctgaac 1740 gcgagaacct ctacctcggt agacataaac gtcccataca tcggggagac ccccacgcaa 1800 tcctcagaga cacagaactc ctggaccctc ctcgttatgg tgctcgttcc cctagactat 1860 aaggaaggag ccacaactga cccagaaatt acattttctg taaggcctac aagtccctac 1920 ttcaatgggc ttcgcaaccg ctacacggcc gggacggacg aagaacaggg gcccattcct 1980 acggcaccca gagaaaattc gcttatgttt ctctcaaccc tccctgacga cactgtccct 2040 gcttacggga atgtgcgtac ccctcctgtc aattacctcc ctggtgaaat aaccgacctt 2100 ttgcaactgg cccgcatacc cactctcatg gcatttgagc gggtgcctga acccgtgcct 2160 gcctcagaca catatgtgcc ctacgttgcc gttcccaccc agttcgatga caggcctctc 2220 atctccttcc cgatcaccct ttcagatccc gtctatcaga acaccctggt tggcgccatc 2280 agttcaaatt tcgccaatta ccgtgggtgt atccaaatca ctctgacatt ttgtggaccc 2340 atgatggcga gagggaaatt cctgctctcg tattctcccc caaatggaac gcaaccacag 2400 actctttccg aagctatgca gtgcacatac tctatttggg acataggctt gaactctagt 2460 tggaccttcg tcgtccccta catctcgccc agtgactacc gtgaaactcg agccattacc 2520 aactcggttt actccgctga tggttggttt agcctgcaca agttgaccaa aattactcta 2580 ccacctgact gtccgcaaag tccctgcatt ctctttttcg cttctgctgg tgaggattac 2640 actctccgtc tccccgttga ttgtaatcct tcctatgtgt tccactccac cgacaacgcc 2700 gagaccgggg ttattgaggc gggtaacact gacaccgatt tctctggtga actggcggct 2760 cctggctcta accacactaa tgtcaagttc ctgtttgatc gatctcgatt attgaatgta 2820 atcaaggtac tggagaagga cgccgttttc ccccgccctt tccctacaca agaaggtgcg 2880 cagcaggatg atggttactt ttgtcttctg accccccgcc caacagtcgc ttcccgaccc 2940 gccactcgtt tcggcctgta cgccaatccg tccggcagtg gtgttcttgc taacacttca 3000 ctggacttca atttttatag cttggcctgt ttcacttact ttagatcgga ccttgaggtt 3060 acggtggtct cactagagcc ggatctggaa tttgctgtag ggtggtttcc ttctggcagt 3120 gaataccagg cttccagctt tgtctacgac cagctgcatg tgcccttcca ctttactggg 3180 cgcactcccc gcgctttcgc tagcaagggt gggaaggtat ctttcgtgct cccttggaac 3240 tctgtctcgt ctgtgctccc cgtgcgctgg gggggggctt ccaagctctc ttctgctacg 3300 cggggtctac cggcgcatgc tgattggggg actatttacg cctttgtccc ccgtcctaat 3360 gagaagaaaa gcaccgctgt aaaacacgtg gccgtgtaca ttcggtacaa gaacgcacgt 3420 gcctggtgcc ccagcatgct tccctttcgc agctacaagc agaagatgct gatgcaatct 3480 ggcgatatcg agaccaatcc tggtcctgct tctgacaacc caattttgga gtttcttgaa 3540 gcagaaaatg atctagtcac tctggcctct ctctggaaga tggtgcactc tgttcaacag 3600 acctggagaa agtatgtgaa gaacgatgat ttttggccca atttactcag cgagctagtg 3660 ggggaaggct ctgtcgcctt ggccgccacg ctatccaacc aagcttcagt aaaggctctt 3720 ttgggcctgc actttctctc tcgggggctc aattacactg acttttactc tttactgata 3780 gagaaatgct ctagtttctt taccgtagaa ccacctcctc caccagctga aaacctgatg 3840 accaagccct cagtgaagtc gaaattccga aaactgttta agatgcaagg acccatggac 3900 aaagtcaaag actggaacca aatagctgcc ggcttgaaga attttcaatt tgttcgtgac 3960 ctagtcaaag aggtggtcga ttggctgcag gcctggatca acaaagagaa agccagccct 4020 gtcctccagt accagttgga gatgaagaag ctcgggcctg tggccttggc tcatgacgct 4080 ttcatggctg gttccgggcc ccctcttagc gacgaccaga ttgaatacct ccagaacctc 4140 aaatctcttg ccctaacact ggggaagact aatttggccc aaagtctcac cactatgatc 4200 aatgccaaac aaagttcagc ccaacgagtt gaacccgttg tggtggtcct tagaggcaag 4260 ccgggatgcg gcaagagctt ggcctctacg ttgattgccc aggctgtgtc caagcgcctc 4320 tatggctccc aaagtgtata ttctcttccc ccagatccag atttcttcga tggatacaaa 4380 ggacagttcg tgaccttgat ggatgatttg ggacaaaacc cggatggaca agatttctcc 4440 accttttgtc agatggtgtc gaccgcccaa tttctcccca acatggcgga ccttgcagag 4500 aaagggcgtc cctttacctc caatctcatc attgcaacta caaatctccc ccacttcagt 4560 cctgtcacca ttgctgatcc ttctgcagtc tctcgccgta tcaactacga tctgactcta 4620 gaagtatctg aggcctacaa gaaacacaca cggctgaatt ttgacttggc tttcaggcgc 4680 acagacgccc cccccattta tccttttgct gcccatgtgc cctttgtgga cgtagctgtg 4740 cgcttcaaaa atggtcacca gaattttaat ctcctagagt tggtcgattc catttgtaca 4800 gacattcgag ccaagcaaca aggtgcccga aacatgcaga ctctggttct acagagcccc 4860 aacgagaatg atgacacccc cgtcgacgag gcgttgggta gagttctctc ccccgctgcg 4920 gtcgatgagg cgcttgtcga cctcactcca gaggccgacc cggttggccg tttggctatt 4980 cttgccaagc taggtcttgc cctagctgcg gtcacccctg gtctgataat cttggcagtg 5040 ggactctaca ggtacttctc tggctctgat gcagaccaag aagaaacaga aagtgaggga 5100 tctgtcaagg cacccaggag cgaaaatgct tatgacggcc cgaagaaaaa ctctaagccc 5160 cctggagcac tctctctcat ggaaatgcaa cagcccaacg tggacatggg ctttgaggct 5220 gcggtcgcta agaaagtggt cgtccccatt accttcatgg ttcccaacag accttctggg 5280 cttacacagt ccgctcttct ggtgaccggc cggaccttcc taatcaatga acatacatgg 5340 tccaatccct cctggaccag cttcacaatc cgcggtgagg tacacactcg tgatgagccc 5400 ttccaaacgg ttcatttcac tcaccacggt attcccacag atctgatgat ggtacgtctc 5460 ggaccgggca attctttccc taacaatcta gacaagtttg gacttgacca gatgccggca 5520 cgcaactccc gtgtggttgg cgtttcgtcc agttacggaa acttcttctt ctctggaaat 5580 ttcctcggat ttgttgattc catcacctct gaacaaggaa cttacgcaag actctttagg 5640 tacagggtga cgacctacaa aggatggtgc ggctcggccc tggtctgtga ggccggtggc 5700 gtccgacgca tcattggcct gcattctgct ggcgccgccg gtatcggcgc cgggacctat 5760 atctcaaaat taggactaat caaagccctg aaacacctcg gtgaaccttt ggccacaatg 5820 caaggactga tgactgaatt agagcctgga atcaccgtac atgtaccccg gaaatccaaa 5880 ttgagaaaga cgaccgcaca cgcggtgtac aaaccggagt ttgagcctgc tgtgttgtca 5940 aaatttgatc ccagactgaa caaggatgtt gacttggatg aagtaatttg gtctaaacac 6000 actgccaatg tcccttacca acctcctttg ttctacacat acatgtcaga gtacgctcat 6060 cgagtcttct ccttcttggg gaaagacaat gacattctga ccgtcaaaga agcaattctg 6120 ggcatccccg gactagaccc catggatccc cacacagctc cgggtctgcc ttacgccatc 6180 aacggccttc gacgtactga tctcgtcgat tttgtgaacg gtacagtaga tgcggcgctg 6240 gctgtacaaa tccagaaatt cttagacggt gactactctg accatgtctt ccaaactttt 6300 ctgaaagatg agatcagacc ctcagagaaa gtccgagcgg gaaaaacccg cattgttgat 6360 gtgccctccc tggcgcattg cattgtgggc agaatgttgc ttgggcgctt tgctgccaag 6420 tttcaatccc atcctggctt tctcctcggc tctgctatcg ggtctgaccc tgatgttttc 6480 tggaccgtca taggggctca actcgagggg agaaagaaca cgtatgacgt ggactacagt 6540 gcctttgact cttcacacgg cactggctcc ttcgaggctc tcatctctca ctttttcacc 6600 gtggacaatg gttttagccc tgcgctggga ccgtatctca gatccctggc tgtctcggtg 6660 cacgcttacg gcgagcgtcg catcaagatt accggtggcc tcccctccgg ttgtgccgcg 6720 accagcctgc tgaacacagt gctcaacaat gtgatcatca ggactgctct ggcattgact 6780 tacaaggaat ttgaatatga catggttgat atcatcgcct acggtgacga ccttctggtt 6840 ggcacggatt acgatctgga cttcaatgag gtggcacgac gcgctgccaa gttggggtat 6900 aagatgactc ctgccaacaa gggttctgtc ttccctccga cttcctctct ttccgatgct 6960 gtttttctaa agcgcaaatt cgtccaaaac aacgacggct tatacaaacc agttatggat 7020 ttaaagaatt tggaagccat gctctcctac ttcaaaccag gaacactact cgagaagctg 7080 caatctgttt ctatgttggc tcaacattct ggaaaagaag aatatgatag attgatgcac 7140 cccttcgctg actacggtgc cgtaccgagt cacgagtacc tgcaggcaag atggagggcc 7200 ttgttcgact gacccagata gcccaaggcg cttcggtgct gccggcgatt ctgggagaac 7260 tcagtcggaa cagaaaaggg aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 7310 //