ID   DQ530425; SV 1; linear; genomic RNA; STD; VRL; 2114 BP.
XX
AC   DQ530425;
XX
DT   02-DEC-2006 (Rel. 90, Created)
DT   08-DEC-2006 (Rel. 90, Last updated, Version 2)
XX
DE   Brome mosaic virus strain Fescue segment RNA3, complete sequence.
XX
KW   .
XX
OS   Brome mosaic virus
OC   Viruses; Riboviria; Bromoviridae; Bromovirus.
XX
RN   [1]
RP   1-2114
RX   DOI; 10.1094/MPMI-19-1229.
RX   PUBMED; 17073305.
RA   Ding X.S., Schneider W.L., Chaluvadi S.R., Mian M.A., Nelson R.S.;
RT   "Characterization of a Brome mosaic virus strain and its use as a vector
RT   for gene silencing in monocotyledonous hosts";
RL   Mol. Plant Microbe Interact. 19(11):1229-1239(2006).
XX
RN   [2]
RP   1-2114
RA   Ding X.S., Schneider W.B., Chaluvadi S.R., Mian M.R., Nelson R.S.III.;
RT   ;
RL   Submitted (05-MAY-2006) to the INSDC.
RL   Plant Biology Division, The Samuel Roberts Noble Foundation, Inc., 2510 Sam
RL   Noble Parkway, Ardmore, OK 73401, USA
XX
DR   MD5; e3566612aa5da44ae3afc5d2784b5970.
DR   RFAM; RF01084; TLS-PK3.
DR   RFAM; RF01108; BMV3_UPD-PK1.
DR   RFAM; RF01113; BMV3_UPD-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2114
FT                   /organism="Brome mosaic virus"
FT                   /segment="RNA3"
FT                   /host="Festuca arundinacea Schreb."
FT                   /strain="Fescue"
FT                   /mol_type="genomic RNA"
FT                   /PCR_primers="fwd_seq:
FT                   aattaaccctcactaaagggagagtaaaataccaact, rev_seq:
FT                   gacaatggtctcttttagag"
FT                   /note="acronym: F-BMV"
FT                   /db_xref="taxon:12302"
FT   CDS             92..1003
FT                   /codon_start=1
FT                   /product="3a protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:A0SL69"
FT                   /protein_id="ABF83487.1"
FT                   /translation="MSNIVSPFSGSSRTTSDVGKQAGGTSDEKLIESLFSEKAVKEIAA
FT                   ECKLGCYNYLKSNEPRNYIDLVPKSHVSAWLSWATPKYDKGELPSRGFMNVPRIVCFLV
FT                   RTTDSAESGSITVSLCDSGKAARAGVLEAIDNQEATIQLSALPALIALTPSYDCPMEVI
FT                   GGDSGRNRCFGIATQLSGVVGTTGSVAVTHAYWQANFKAKPNNYKLHGPATIMVMPFDR
FT                   LRQLDKKSLKNYIRGISNQSVDHGYLLGRPLQSVDQVAQEDLLVEESESPSALGRGVKD
FT                   SKSVSASSVAGLPVSSPSLRIK"
FT   CDS             1248..1817
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:A0SL70"
FT                   /db_xref="InterPro:IPR002009"
FT                   /db_xref="UniProtKB/TrEMBL:A0SL70"
FT                   /protein_id="ABF83488.1"
FT                   /translation="MSTSGTGKMTRAQRRAAARRNRRTATVQPVIVEPFAAGQGKAIKA
FT                   IAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRI
FT                   KACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVP
FT                   AKAVVVHLEVEHVRPTFDDFFTPVYR"
XX
SQ   Sequence 2114 BP; 524 A; 471 C; 544 G; 575 T; 0 other;
     gtaaaatacc aactaattct cgttcgattc cggcgaacat tctattttac caacatcggt        60
     tttttcagta gtgatactgt ttttgttccc gatgtctaac atagtttctc ccttcagtgg       120
     ttcctcacga actacgtctg acgttggcaa gcaagcggga ggtactagcg acgagaagct       180
     cattgagtcg ctgttctctg aaaaggctgt gaaagagata gctgccgagt gtaaactcgg       240
     atgttataac tatctgaagt ctaatgaacc ccgcaactat atagacctgg tgccaaagtc       300
     acacgtatct gcttggctct catgggctac acccaagtat gataaaggag agttaccttc       360
     caggggattc atgaacgttc cacgcatcgt ttgttttctc gttcgtacca cagatagcgc       420
     agagtccggt tctataaccg tgagcctgtg cgattctggt aaggctgctc gtgctggagt       480
     actcgaagcc attgataatc aggaggccac aattcagttg tcggctttac ctgctttgat       540
     agctttgacg cctagctatg attgtccgat ggaagtcatc ggcggtgata gcggtaggaa       600
     tcgatgtttt gggatagcaa cccaacttag cggtgtggtg gggacaacag gttccgttgc       660
     agttactcat gcttattggc aagctaattt caaagcgaag cccaacaact ataagttgca       720
     tggtcccgct acaattatgg taatgccatt tgacagactg agacaactcg ataagaaaag       780
     cctcaaaaat tacatcagag gtatttctaa ccagtctgtg gatcatgggt atcttctcgg       840
     aagaccgtta caatctgttg atcaggttgc ccaggaagat ttgttagttg aggaatccga       900
     gtctccttcc gctctcggca gaggtgtgaa ggatagtaag tctgtatccg cgtcatctgt       960
     cgctggactt cctgtgtcca gtccttcgct tagaattaaa taggtaaatc cggtctaaca      1020
     agcttggtcc atttcgtgga gttaagcaag ctggggagac ccccgacagc cgtttggatc      1080
     agcgctcgcg tctcgtttgg gttcaattcc cttaccttac aacggcgtgt tgagataggt      1140
     cctcggggga ggttatccat gtttgtggat attctatgtt gtgtgtctga gttattaaaa      1200
     aaaaaaaaaa aaaaaaaaga tctatgtcct aattcagcgt attaataatg tcgacttcag      1260
     gaactggtaa gatgactcgc gcgcagcgtc gagctgccgc tcgtagaaat cgtcggaccg      1320
     ctacggtcca accggtaatt gtcgaaccat tcgctgctgg ccaaggcaag gccattaaag      1380
     cgattgcagg atacagcata tcaaagtggg aggcgtcttc ggacgcgatt acagcgaaag      1440
     ccaccaatgc catgagtatc actctgcccc atgagctctc ttctgaaaag aataaggagc      1500
     ttaaggtcgg cagggtgctg ctttggttgg gacttcttcc tagcgttgct gggaggatta      1560
     aggcttgtgt tgctgagaaa caggcacagg ccgaggccgc ttttcaagta gccttggcgg      1620
     ttgctgactc ctcgaaagag gtggtcgcgg ccatgtatac ggacgccttt cgaggggcga      1680
     ctctggggga tttgcttaat ctccagattt atctgtatgc atctgaagca gtgcctgcta      1740
     aggcggtcgt tgtacatcta gaagttgagc acgtaaggcc tacgttcgat gacttcttca      1800
     ccccggttta taggtagtgc ccctgctcgg agagcccctg actgggttaa agtcacaggc      1860
     cccttgtctc aggtagagac cctgtccagg taggacactt tggctaaggt taaaagcttg      1920
     ttgaatcagt acaataactg atagtcgtgg ttgacacgca gacctcttac aagagtgtct      1980
     aggtgccttt gagagttact ctttgctctc ttcggaagaa cccttagggg ttcgtgcatg      2040
     ggcttgcata gcaagtctta gaatgcgggt accgtacagt gttgaaaaac actgtaaatc      2100
     tctaaaagag acca                                                        2114
//