ID DQ530424; SV 1; linear; genomic RNA; STD; VRL; 2867 BP. XX AC DQ530424; XX DT 02-DEC-2006 (Rel. 90, Created) DT 08-DEC-2006 (Rel. 90, Last updated, Version 2) XX DE Brome mosaic virus strain Fescue segment RNA2, complete sequence. XX KW . XX OS Brome mosaic virus OC Viruses; Riboviria; Bromoviridae; Bromovirus. XX RN [1] RP 1-2867 RX DOI; 10.1094/MPMI-19-1229. RX PUBMED; 17073305. RA Ding X.S., Schneider W.L., Chaluvadi S.R., Mian M.A., Nelson R.S.; RT "Characterization of a Brome mosaic virus strain and its use as a vector RT for gene silencing in monocotyledonous hosts"; RL Mol. Plant Microbe Interact. 19(11):1229-1239(2006). XX RN [2] RP 1-2867 RA Ding X.S., Schneider W.B., Chaluvadi S.R., Mian M.R., Nelson R.S.III.; RT ; RL Submitted (05-MAY-2006) to the INSDC. RL Plant Biology Division, The Samuel Roberts Noble Foundation, Inc., 2510 Sam RL Noble Parkway, Ardmore, OK 73401, USA XX DR MD5; 7dfc8736c5959648c83d93b3538f2afd. DR RFAM; RF01084; TLS-PK3. DR RFAM; RF01113; BMV3_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..2867 FT /organism="Brome mosaic virus" FT /segment="RNA2" FT /host="Festuca arundinacea Schreb." FT /strain="Fescue" FT /mol_type="genomic RNA" FT /PCR_primers="fwd_seq: FT aattaaccctcactaaagggagagtaaaccacggaacg, rev_seq: FT gacaatggtctcttttagag" FT /note="acronym: F-BMV" FT /db_xref="taxon:12302" FT CDS 104..2572 FT /codon_start=1 FT /product="2a protein" FT /note="replication-associated protein" FT /db_xref="GOA:A0SL68" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR007610" FT /db_xref="InterPro:IPR018228" FT /db_xref="UniProtKB/TrEMBL:A0SL68" FT /protein_id="ABF83486.1" FT /translation="MSSKTWDDDFVRQVPSFQWIIDQSLEDEVEAASLQVQEPADGVAI FT DGSLASFKLAIAPLEIGGVFDPPFDRVRWGSICDTVQQMVQQFTDRPLIPQAEMARMLY FT LDIPGSFVLEDEIDDWYPEDTSDGYGVSFAADEDHASDLKLASDSSNCEIEEVRVTGDT FT PKELTLGDRYMGIDEEFQTTNTDYDITLQIMNPIEHRVSRVIDTHCHPDNPDISTGPIY FT MERVSLARTEATSHSILPTHAYFDDSYHQALVENGDYSMDFDRIRLKQSDVDWYRDPDK FT YFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPEMGDAINMKETAKAIAKRFRSTFLNV FT DGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNVAAETDLRRYQHMLKSDVKPVVTDTL FT HLERAVAATITFHSKGVTSNFSPFFTACFEKLSLALKSRFIVPIGKISSLELKNVRLNN FT RYFLEADLSKFDKSQGELHLEFQREILLALGFPAPLTNWWSDFHRDSYLSDPHAKVGMS FT VSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAIFSGDDSLIISKVKPVLDTDMFT FT SLFNMEIKVMDPSVPYVCSKFLVETEMGNWVSIPDPMREIQRLAKRKILREEQMLRAHF FT VSFCDRMKFINQLDEKMITMLCHFVYLKYGKEKPWIFEEVRAALAAFSLYSENFLRFSD FT CYCTEGIRVYQMSDPVCKFKRTMEERKTDGDWFHNWKNPKFPGVLDKVYRTLGIYSSDC FT STKELPVKRIGRLHEALERESLRLANDRRTTQRLKKKVDDYATGRGGLTSVDALLLKSH FT CETFKPSDLR" FT misc_difference 1920 FT /replace="t" FT misc_difference 1984 FT /replace="t" FT misc_difference 2430 FT /replace="a" XX SQ Sequence 2867 BP; 774 A; 593 C; 682 G; 818 T; 0 other; gtaaaccacg gaacgaggtt caatcccttg tcgacccacg gtttgcgcaa cacacatcta 60 accttgttgt tgttgtgttt tgtttctttc tactatcacc aagatgtctt cgaaaacctg 120 ggatgatgat ttcgttcgcc aggtcccgtc tttccaatgg atcatagatc aatccttaga 180 agacgaggtg gaggctgcta gccttcaggt gcaggagccg gcagacggag ttgccattga 240 cggatctctc gcgagtttta aattagctat agcgcccttg gagataggag gggtgttcga 300 tccccctttt gaccgagtgc gctggggctc tatttgcgat accgtccagc aaatggttca 360 acagttcacc gatagaccac tgattcctca ggctgaaatg gcacggatgt tatatcttga 420 cattccgggc tcttttgtgc tcgaagatga aatcgatgac tggtatcctg aggatactag 480 tgacggttac ggtgtatcgt ttgccgccga tgaagatcat gcgagcgatc taaaactcgc 540 cagtgattcc tcgaactgtg aaattgagga agttcgtgtt actggagata cccccaagga 600 gctgaccctt ggagataggt acatgggcat tgacgaagag tttcagacta ccaatactga 660 ttacgacatc actcttcaga tcatgaatcc tattgaacat agggtttcgc gcgttattga 720 tacgcactgc catccagata accctgacat ctccactggg ccaatttata tggagagagt 780 cagccttgct agaacagaag caaccagtca ttccatactg ccaacccatg cttatttcga 840 tgattcgtac catcaagccc ttgttgagaa tggtgattat tccatggact ttgataggat 900 cagacttaag caaagtgatg tagactggta cagggacccc gataaatatt ttcaaccaaa 960 aatgaatatc gggagtgctc agcgaagagt tggtactcag aaagaagtct taaccgcact 1020 taaaaagcga aacgcggatg ttccagaaat gggagacgcg attaacatga aggaaactgc 1080 gaaggctata gcaaagcgct ttcgtagcac attccttaat gttgacggtg aagactgtct 1140 gagagcttct atggatgtca tgactaagtg tcttgagtac cataagaagt ggggtaagca 1200 catggactta caaggtgtga atgtggcagc agagactgat ttacgtcggt accagcatat 1260 gctgaagtct gatgtaaaac ctgttgtaac tgacaccctt cacttggaac gagcagtagc 1320 agctactata acatttcata gtaaaggtgt gactagtaat ttttcaccct ttttcactgc 1380 ttgtttcgag aagttatcat tggccctgaa atccaggttc attgtgccta tcggaaagat 1440 atcctctctg gagcttaaga atgtccgctt gaataacaga tactttcttg aagcggacct 1500 aagcaaattt gataaatctc agggtgagct gcacctagag tttcagagag agatacttct 1560 tgcgctgggc tttccagcgc cgctgacgaa ttggtggtct gattttcatc gcgattctta 1620 tttatcagac cctcatgcca aggtgggaat gtccgtttcc ttccaacgca gaactggtga 1680 tgcgtttaca tatttcggga atactcttgt cactatggct atgattgcat atgcctctga 1740 tctaagtgac tgtgactgtg caatattctc aggagatgat tctttaatca tttctaaagt 1800 taaaccagtc ttggataccg atatgttcac gtctctcttt aatatggaga taaaagttat 1860 ggaccctagt gtgccctacg tttgtagtaa gtttcttgtt gaaactgaaa tgggcaattg 1920 ggtgtctata ccagacccta tgagagagat ccagcgctta gctaagcgaa agattctgcg 1980 tgaagaacag atgctcagag cacatttcgt ttccttctgc gatcgaatga agtttattaa 2040 tcaacttgat gagaagatga ttacgatgct ctgtcatttt gtttatctga aatatgggaa 2100 agaaaaacct tggattttcg aggaggttag agctgctctt gcggcttttt ctttatactc 2160 cgagaatttc ctgaggttct ctgattgcta ctgtaccgaa ggcatcagag tttatcagat 2220 gagcgatcct gtatgtaagt tcaaacgcac tatggaagag cgtaaaactg atggtgactg 2280 gtttcacaac tggaagaatc caaagtttcc tggtgtgtta gacaaagtct acagaaccct 2340 tggaatttat tcctcggact gtagtactaa ggagctccct gtcaaacgga tcggacgttt 2400 acatgaggcc cttgagcgtg agtcactcag attagcgaat gatcgtagga ccacacaacg 2460 cttgaaaaag aaggtcgacg attacgctac cggtagagga ggcctaacgt cagttgatgc 2520 tttgctcttg aagtcccatt gtgagacttt taagccctct gatctgagat gatcggttct 2580 atatgatata tgaacctaag ctgtgagcag ccctttggtt aaggttaaaa actcctggtc 2640 aggtagacca ctttggctaa gtttaaaagc ttgttgaatc agtacaataa ctgatagtcg 2700 tggttgacac gcagacctct tacaagagtg tctaggtgcc tttgagagtt actctttgct 2760 ctcttcggaa gaacccttag gggttcgtgc atgggcttgc atagcaagtc ttagaatgcg 2820 ggtaccgtac agtgttgaaa aacactgtaa atctctaaaa gagacca 2867 //