ID DQ530423; SV 1; linear; genomic RNA; STD; VRL; 3234 BP. XX AC DQ530423; XX DT 02-DEC-2006 (Rel. 90, Created) DT 08-DEC-2006 (Rel. 90, Last updated, Version 2) XX DE Brome mosaic virus strain Fescue segment RNA1, complete sequence. XX KW . XX OS Brome mosaic virus OC Viruses; Riboviria; Bromoviridae; Bromovirus. XX RN [1] RP 1-3234 RX DOI; 10.1094/MPMI-19-1229. RX PUBMED; 17073305. RA Ding X.S., Schneider W.L., Chaluvadi S.R., Mian M.A., Nelson R.S.; RT "Characterization of a Brome mosaic virus strain and its use as a vector RT for gene silencing in monocotyledonous hosts"; RL Mol. Plant Microbe Interact. 19(11):1229-1239(2006). XX RN [2] RP 1-3234 RA Ding X.S., Schneider W.B., Chaluvadi S.R., Mian M.R., Nelson R.S.III.; RT ; RL Submitted (05-MAY-2006) to the INSDC. RL Plant Biology Division, The Samuel Roberts Noble Foundation, Inc., 2510 Sam RL Noble Parkway, Ardmore, OK 73401, USA XX DR MD5; dfda913949ee3a1906a42d1ea8ff46ac. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3234 FT /organism="Brome mosaic virus" FT /segment="RNA1" FT /host="Festuca arundinacea Schreb." FT /strain="Fescue" FT /mol_type="genomic RNA" FT /PCR_primers="fwd_seq: FT aattaaccctcactaaagggagagtagaccacggaacgag, rev_seq: FT gacaatggtctcttttagag" FT /note="acronym: F-BMV" FT /db_xref="taxon:12302" FT CDS 75..2960 FT /codon_start=1 FT /product="1a" FT /note="replication-associated protein" FT /db_xref="GOA:A0SL67" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A0SL67" FT /protein_id="ABF83485.1" FT /translation="MSSSIDLLKLIAEKGAASQSAQDIVDNQVAQQLSAQIEYAKRSKK FT INVRNKLSIEEADAFRDRYGGAFDLNLTQQYHAPHSLAGALRVAEHYDCLDSFPPEDPV FT IDFGGSWWHHFSRRDKRVHSCCPVLGVRDAARHEERMCRMRKILQESDDFDEVPNFCLN FT RAQDCDVQADWAICIHGGYDMGFQGLCDAMHSHGVRVLRGTVMFDGAMLFDREGFLPLL FT KCHWQRDGSGADEVIKFDFENESTLSYIHGWQDLGSFFTESVHCIDGTTYLLEREMLKC FT NIMTYKIIATNLRCPRETLRHCVWFEDISKYVGVSIPEDWSLNRWKCVRVAKTTVREVE FT EIAFRCFKENKEWTENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLN FT LYQKYEKLTALRDGMEWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYAD FT SFKFLTRLSNVEEFEQDSVPISRLRTFWTEEDLFDRLEHEVQTAKTKRSKKKAIVPPAA FT EIPQEEFHDAPESSSPESVSDDVKPVTDVVPDAEVSVEVPTDPRGISRHGAMKEFVRYC FT KRLHNNSESNLRHLWDISGGRGSEIANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYT FT VGYNEHGLGPKHADETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTA FT IKDAFRMGEDLIVTANRKSAEDVRMALFPDTFNSKVALDVVRTADSAIMHGVPSCHRLL FT VDEAGLLHYGQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLKYDRRDVVHK FT TYRCPQDVIAAVNLLKRKCGNRDTKYQSWTSESKVSRSLTKRRITSVLQVTIDPNRTYL FT TMTQADKAALQTRAKDFPVSKDWIDGHIKTVHEAQGISVDNVALVRLKSTKCDLFKHEE FT YCLVALTRHKKSFEYCFNGELAGDLIFNCVK" FT misc_difference 1724 FT /replace="t" FT misc_difference 3194 FT /replace="g" XX SQ Sequence 3234 BP; 826 A; 684 C; 844 G; 880 T; 0 other; gtagaccacg gaacgaggtt caatcccttg tcgaccacgg ttctactact tgttctttgt 60 ttttcaccaa caaaatgtca agttctatcg atttgctgaa gttgattgct gagaagggtg 120 ctgccagcca gagtgcccaa gacatcgtag acaatcaggt cgcgcaacag ttatctgcgc 180 agattgaata cgcgaaaagg tctaagaaaa tcaacgttcg caataagctc tctattgagg 240 aggctgacgc cttccgtgac cgttatggtg gtgcctttga tttaaatttg actcagcagt 300 atcatgcacc ccatagcctg gctggtgctc tgcgtgtagc ggagcattac gactgtctcg 360 acagttttcc ccctgaagac cccgttatag atttcggagg gtcttggtgg catcactttt 420 caagaaggga taaaagggtg cacagttgtt gtcctgtgtt gggtgttaga gacgctgccc 480 gacatgagga gaggatgtgc cgcatgcgga aaattttgca agaaagcgat gatttcgatg 540 aagtcccgaa cttttgtctt aaccgagctc aagattgtga tgtccaagct gattgggcta 600 tctgtatcca tggcggttat gatatgggct tccaaggtct gtgtgacgcc atgcattcgc 660 atggagtacg cgtactacgt ggtaccgtta tgttcgacgg cgccatgttg tttgaccgcg 720 agggttttct tcccttgctt aaatgtcact ggcaacgtga cgggtcaggc gcggatgagg 780 tgatcaaatt cgactttgaa aatgaaagca cattatctta catccatgga tggcaagatt 840 tgggctcctt tttcaccgag tcggtgcatt gcatcgatgg aaccacctat ctgttggagc 900 gcgaaatgct gaaatgtaac atcatgacct ataagatcat cgctacaaat ttacgctgcc 960 cccgggagac actacgtcac tgtgtatggt ttgaagacat atctaagtac gtgggagtct 1020 caatacctga agactggagt ctcaatcgct ggaaatgtgt gcgcgtcgcc aaaaccacag 1080 tgagagaggt agaggagata gctttcagat gtttcaagga aaataaagaa tggaccgaga 1140 acatgaaagc tgtcgcatct atcttatccg ccaagtcgtc gactgttatt attaacggtc 1200 aggctatcat ggctggtgag cgcttagaca ttgaagatta tcatctagtg gcctttgctt 1260 tgactttgaa tctgtatcaa aagtacgaaa agcttacggc cctccgcgat gggatggaat 1320 ggaaaggttg gtgccatcac ttcaaaacta ggttttggtg gggtggagat tcatccaggg 1380 cgaaagtagg atggctgaga acattggcta gcagatttcc cctactacgt ctggattctt 1440 atgcggacag ttttaagttt ctgactcgtc tctcaaacgt tgaagaattt gagcaagatt 1500 ctgtaccaat atcacgtttg agaacgtttt ggactgaaga ggacttattc gaccggctgg 1560 agcatgaagt gcagacagcc aagaccaagc gctcgaagaa gaaggcgata gtcccgccag 1620 ctgctgagat acctcaggag gagtttcatg atgcccctga gagttcgagc cctgagtccg 1680 tcagtgatga cgttaaaccg gtgactgatg tggtcccgga tgccgaggtg tctgttgagg 1740 taccaacgga ccctcgtggc atatctagac acggagccat gaaggaattt gtgcgttatt 1800 gtaagagatt acataacaac tccgagtcta atcttcgtca cctatgggac atttccggcg 1860 gtcgcggaag tgagatcgca aataagagca tcttcgagac ctaccatcgc atagacgata 1920 tggtgaatgt ccatttggcc aacggtaact ggttgtatcc taaaaaatac gattacaccg 1980 ttggatataa tgagcatggt ttaggtccga agcacgcaga tgaaacgtac attgttgata 2040 aaacatgtgc atgctctaac ttgagggaca ttgcagaagc tagcgccaaa gtttctgtcc 2100 ctacatgcga tatttccatg gttgatggag ttgcgggatg cggtaaaacc actgccataa 2160 aagatgcatt ccgtatggga gaggacctaa ttgtgacggc gaatcgtaaa tcggccgagg 2220 acgtcaggat ggctttattc cctgacactt ttaattccaa ggtagctttg gatgttgtgc 2280 gcaccgcgga ttctgcgatc atgcacggtg taccgtcctg tcataggctg cttgttgatg 2340 aggctggttt actacattac ggtcaactcc tggtggtggc tgctctgtct aaatgttcac 2400 aagttcttgc ctttggggac acagagcaga tttcgttcaa gtctcgtgac gcgggtttta 2460 aattgctcca cggtaatctg aaatatgatc gccgtgacgt tgttcacaag acttaccggt 2520 gtccgcaaga tgttatcgct gctgttaatc tgctgaagcg taaatgcggt aatagggaca 2580 cgaagtatca atcctggaca tctgagtcca aagtttctag aagtctcacg aagcgtcgta 2640 ttacttctgt tttgcaggtc actattgatc cgaacagaac gtatcttacg atgactcaag 2700 ctgataaagc ggcccttcaa acgagggcta aggactttcc cgtgagcaag gactggattg 2760 atggacatat aaaaacagta cacgaagcgc aagggatctc tgttgacaat gtcgctttgg 2820 ttcggcttaa gtcgaccaaa tgtgatttgt ttaaacatga ggagtactgt ttggttgcct 2880 taacacgaca caagaagtcc tttgagtatt gctttaacgg cgagctcgct ggtgatttga 2940 tctttaattg tgttaagtga tgcgcttgtc tctgtgtgag acctctgctc gaggagagcc 3000 ctgttccagg taggaacgtt gtggtctaac ttaagactag ctgaatcggt gctataaccg 3060 atagtcgtgg ttgacacgca gacctcttac aagagtgtct aggcgccttt gagagttact 3120 ctttgctctc ttcggaagaa cccctagggg ttcgtgcatg ggcttgcata gcaagtctta 3180 gaatgcgggt gccttacagt gttgaaaaac actgtaaatc tctaaaagag acca 3234 //