ID DQ528812; SV 1; linear; genomic RNA; STD; VRL; 4291 BP. XX AC DQ528812; XX DT 20-MAY-2006 (Rel. 87, Created) DT 24-OCT-2011 (Rel. 110, Last updated, Version 3) XX DE Trichomonas vaginalis virus 1 isolate Changchun capsid protein gene, DE complete cds; and RNA-dependent RNA polymerase gene, partial cds. XX KW . XX OS Trichomonas vaginalis virus 1 OC Viruses; Riboviria; Totiviridae; Trichomonasvirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-4291 RX PUBMED; 21861063. RA Li W., Ding H., Zhang X., Cao L., Li J., Gong P., Li H., Zhang G., Li S., RA Zhang X.; RT "The viral RNA-based transfection of enhanced green fluorescent protein RT (EGFP) in the parasitic protozoan Trichomonas vaginalis"; RL Parasitol. Res. 0:0(2011). XX RN [2] RP 1-4291 RA Zhao Y., Zhang X., Li J., Liu Q., Yin J., Gong P.; RT "Identification and Characterization of Trichomonas vaginalis dsRNA Virus RT in China"; RL Unpublished. XX RN [3] RP 1-4291 RA Zhao Y., Zhang X., Li J., Liu Q., Yin J., Gong P.; RT ; RL Submitted (03-MAY-2006) to the INSDC. RL College of Animal Science and Veterinary Medicine, Jilin University, 5333# RL Xian Road, Changchun, Jilin 130062, China XX DR MD5; b6b9d222bd6639fb4be8f0df085b6ef4. DR EuropePMC; PMC3126235; 21345965. DR EuropePMC; PMC3655241; 23682261. DR EuropePMC; PMC5450954; 28506033. XX FH Key Location/Qualifiers FH FT source 1..4291 FT /organism="Trichomonas vaginalis virus 1" FT /host="Homo sapiens" FT /isolate="Changchun" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:674953" FT CDS 1..2037 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="UniProtKB/TrEMBL:Q1G0T7" FT /protein_id="ABF57712.1" FT /translation="MEASANGLSHDDNAIKSHNVGPSTLPGSDKQGREKHINSFNSFSN FT DFFFNFLRMSTNTHISDSPGVSFIGKDGTPYSSATIPSAVGRLTHEVIASAVQLNISTS FT NTLEVDYGFGQDVSRTTGTIPIPIFDGEKYKETARALAAIFNKKGMSVDVTSQTVQETL FT KESDLTIATVAAGYYTALAARHELTKQVSVATHTIPYVTALSDTFTAAQNAQRSSHIIS FT SCLRCPNAHNVQRDIGIGTVMWTNVSVESLAAPNMVVPNPNDISFFIPNKSLPSSWWCA FT IWLLNAFLQSFIAPTHIHIFITPGETYHLAPFTDTDVYEAVRLLLAMSKTSRPIPESVE FT SMLYAYGTQMIIQPHSLYTEGGLIRKMIFTVPHLPAHGYFVTNSEFSRYMNIAVPDNPR FT SAKDFVIGVGTGLLQIVLAYQAALSCAGPIALHWHGNDITSEGMDRIADTYLEGRYFTI FT PMAANVATNVAQYTIRVRADPEYRHTLDRILPRIFGPSTDTVFDFIESAITSSWVSIDA FT RKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVDYLMNGGDLR FT NCPVLRTLKAAEREETVTFMCTQKVGSLYAIDGTVRVFKRYQTIDLAQLGWTSHGKVMK FT PYAFRAPLMQGMTICNTAYTSTDIDIVTTVFGPLRNRVGSLFE" FT CDS <2021..4291 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RDRP" FT /db_xref="GOA:Q1G0T6" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:Q1G0T6" FT /protein_id="ABF57713.1" FT /translation="DPFLSKAVRCGPIVPSVKHHFNIVWYSILKRKGKEYTFIPGYGWV FT LQDDYLLSAVKMAGEGVLPPNQLPNDDDISFTLTKILLYDYISHFPEFRYTNPKILTQE FT TELQLFPLKIDSAARTKANFYARTLWNDLATDKSAFKPGTPNDTVAGLLMWQQCALMWS FT LPKLIINKTISGVCDALTERTSLTLLKRISDWLKQLGLAYSPIFRLFIELPTLLGRGAI FT PGDSTLDIKHRLRYNPSITVDVPKDQLHDLIYRLLSRNLNGMKADSFEHHLEERLLWSK FT SGSHFYPDDNIDQLLPPRPTRKEFLDIVTTDYIKECKPQVFIRQSRKLEHGKERFIYNC FT DTISYVYFDFVLKLFESGWQDSEAILSPGDYTSEQLHAKISRYKYKAMLDYTDFNSQHT FT IQSMRLIFETMKELLPPEATFALDWCIASFDNMQTSDGHKWVATLPSGHRATTFINTVL FT NWCYTQMVGLKFDTFMCAGDDVILLSQEPISLAPILTSQFKFNPSKQSTGTRGEFLRKH FT YTEEGVFAYPCRAIVSLVSGNWLSDSLRENTPILVPIQNGIDRLRSRAGLLGVPWSLGL FT SELIEREAIPKEVGMALLNSHAAGPGLITRDYSSFTVTPTPPKISSTLEYTATRHGLQD FT LSKHVPWKQLTVEECNKLGQQIKKMSHRHCSQAKITYKCVYEAFKPRKLPTVLSEASQS FT ALSLVWWQAMLKEAMQDYSTKKIDAHMFVCNACTSSVSGDAFLRATSKMAGVLITSLIS FT SSS" XX SQ Sequence 4291 BP; 1287 A; 1092 C; 825 G; 1087 T; 0 other; atggaggctt ctgctaatgg gttatcacat gatgataatg cgattaaatc gcacaatgtt 60 ggaccttcta ctcttccggg gtcagataag caaggaagag aaaaacatat aaattctttt 120 aattcttttt ctaatgattt cttttttaat tttttacgta tgtctacaaa cacgcacatc 180 tcagacagtc caggcgtctc tttcatcgga aaagacggca caccttacag ctcagctacg 240 atcccatcag ccgtaggccg tcttactcat gaagttatag catcagccgt ccagctcaac 300 atctcaacaa gcaatacttt agaagtagat tacggttttg gtcaagatgt atcaagaact 360 acaggaacca tcccaatccc tatctttgat ggtgaaaaat acaaagaaac agctcgcgcc 420 ttagccgcaa tcttcaacaa gaaaggtatg tcagttgatg ttacttcaca gacagtccaa 480 gaaaccttga aagaatcaga tcttactatt gctacagtcg ctgccggata ctacacagca 540 ctggctgcac gccacgagct cacgaaacaa gtaagcgtcg ccacccacac aatcccatac 600 gttactgcct tatccgatac attcacagca gcacaaaacg cacaacgttc aagccatatt 660 atatcttcct gcttacgttg tcccaacgct cacaatgtcc agcgcgatat cggaattggt 720 acagttatgt ggaccaatgt ttctgtcgag agccttgctg ctccaaacat ggtagttcca 780 aatccaaatg acatatcatt cttcattcca aacaagagtc tcccttcttc ttggtggtgc 840 gcgatctggc ttctcaatgc tttccttcaa agcttcatcg ctcccacaca catccacatc 900 ttcatcacac caggagaaac ataccacctc gctccattca cggacactga tgtttacgaa 960 gctgtccgcc tcttgctcgc tatgtcgaaa acgtcgcgcc caataccaga gagcgtcgaa 1020 agcatgctct atgcttacgg tacacaaatg attatccagc cacattcact ttacacagaa 1080 ggcggcttaa tcagaaagat gatcttcaca gtcccacacc tcccagcaca tggttatttc 1140 gtcaccaatt ccgaattctc gagatacatg aacatcgctg tcccagataa cccccgttcg 1200 gcaaaagatt tcgtcatcgg tgttggcacc ggtcttttgc aaatcgtact cgcctaccag 1260 gccgcactca gctgcgccgg acctattgca cttcactggc atggtaacga catcacctct 1320 gaaggcatgg acagaattgc agatacttat ctcgaaggaa gatacttcac cattccaatg 1380 gcagccaacg tcgccaccaa cgtcgcccaa tacacaataa gggttcgcgc cgatcccgaa 1440 tatcggcata ccctcgaccg aatcttacca cgcatattcg gtccctcaac ggacacagtc 1500 ttcgatttca tcgaatcagc gatcacatca tcctgggtat caatcgatgc ccgcaagcgc 1560 aatggccgtg caaggaagtt cagaacggca ttcatcaacc gtttccacga tccagaattc 1620 gcatacatgt tcggtatcac aggtaacggt atcgaaagaa tggaaggcaa agttacttcg 1680 aatatcgccc aagaagttga ttacctcatg aacggtggcg atcttcgcaa ctgtccagtc 1740 cttcgtacgc tcaaggcggc agaaagagaa gaaacagtca cattcatgtg cacacagaaa 1800 gtcggctcgc tctacgccat cgatggcaca gtccgcgtat tcaagcgata ccaaacaatc 1860 gacctcgccc aacttggttg gacatcacac ggcaaggtga tgaaacctta cgctttccgc 1920 gcgccactca tgcaaggaat gaccatctgc aacacagcct acacatccac agacatcgac 1980 attgtcacaa cagtttttgg cccattacgc aatcgcgttg gatccctttt tgagtaaagc 2040 tgtacgttgt ggccctatag taccatccgt caaacatcat ttcaatattg tttggtattc 2100 tattctcaaa cgcaaaggta aagaatacac gtttatccca ggatacggat gggtactaca 2160 ggatgattat ttgttgagtg ccgtcaaaat ggctggtgaa ggtgttttac caccaaacca 2220 gttacctaat gacgatgata tttcatttac attaacaaaa attttacttt acgattacat 2280 atctcatttt ccagaattca gatacacaaa tccaaaaata ctaacacaag aaacagaatt 2340 acaacttttt ccattaaaaa tagattcagc tgctagaaca aaagcaaact tttacgctag 2400 aacactatgg aatgacttag ccaccgacaa atctgctttc aaaccaggaa ctcctaatga 2460 tacagtcgcc ggtttactga tgtggcaaca atgcgcttta atgtggtctc tacccaagtt 2520 aattatcaac aaaacaatta gcggtgtttg tgatgcatta accgaaagga cttcactcac 2580 gctactcaag cgtatctcag attggttgaa acaactcggg ttagcctact cacctatatt 2640 tcgcctcttc atcgagctcc ctacattatt aggacgagga gcaatcccag gcgatagcac 2700 actagatata aagcacagac tcagatataa tccatcaata accgtcgatg tcccaaagga 2760 tcaattacat gatttgatct acagactctt atcacgcaat ctcaatggta tgaaagctga 2820 cagtttcgaa caccacctag aagaacgctt gctctggtcg aagtcaggaa gccactttta 2880 tcccgatgac aatatcgatc aattacttcc cccacggccc accagaaagg agttcttaga 2940 cattgtaact acagactata tcaaagaatg caaaccccaa gtttttatca gacaatcacg 3000 taaactggag cacggcaagg aacggttcat ctacaattgc gatacgatct catatgtcta 3060 ttttgatttt gtcctgaagc tcttcgagtc aggatggcaa gatagcgaag caatactgtc 3120 gccaggagat tacacaagtg aacaactcca cgccaagatc tcccgttata agtacaaagc 3180 tatgttagac tacacagatt tcaactcgca acatacaatc cagagtatgc gattgatttt 3240 tgaaaccatg aaagagctac tcccacctga agcaaccttc gctcttgatt ggtgcatcgc 3300 ctcatttgat aacatgcaaa cgtctgatgg ccacaaatgg gttgcaaccc tcccaagcgg 3360 acaccgtgct acaacattta tcaataccgt cttaaattgg tgttacaccc aaatggttgg 3420 tctcaagttt gacactttca tgtgcgctgg tgacgacgtc atccttttat ctcaggaacc 3480 aatatcacta gcccctatcc ttacatcaca gttcaagttc aatcctagca aacaaagtac 3540 aggtacaaga ggtgaattct tacgcaagca ctacactgaa gaaggtgtct tcgcgtatcc 3600 gtgccgagca atagtaagct tagtaagtgg aaattggtta agcgattcat tacgagagaa 3660 caccccaatt ttagtcccaa tacagaatgg aattgacaga ctacgcagca gagcgggttt 3720 actcggagtt ccttggagtt taggtctctc agagctcatt gagagagagg ctatcccaaa 3780 ggaagtcggc atggcactgc taaattcaca cgcggcagga ccgggactaa tcactcgtga 3840 ctacagttct tttacagtta caccgactcc acctaaaata agcagtacat tggaatacac 3900 tgcgacacgt catggtcttc aagacttatc caaacatgta ccgtggaagc agcttacagt 3960 cgaagaatgc aataaattag gacagcaaat taagaaaatg agccacaggc attgtagcca 4020 ggcgaagata acctacaaat gtgtctacga agcttttaag cctcgtaaac ttcctacggt 4080 gttatccgaa gccagccagt cagcgttgtc gctggtgtgg tggcaagcaa tgcttaagga 4140 agcaatgcag gactattcta caaagaagat agatgctcac atgtttgttt gtaacgcatg 4200 tacaagctcc gttagcgggg atgcgttttt acgagcaaca tccaagatgg ccggtgtctt 4260 aatcactagc ttgatttctt cttcttcata a 4291 //