ID DQ520944; SV 1; circular; genomic DNA; STD; VRL; 2605 BP. XX AC DQ520944; XX DT 28-MAY-2006 (Rel. 87, Created) DT 28-MAY-2006 (Rel. 87, Last updated, Version 1) XX DE Sida mosaic Sinaloa virus segment A, complete sequence. XX KW . XX OS Sida mosaic Sinaloa virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2605 RA Mauricio-Castillo J.A., Arguello-Astorga G.R., Mendez-Lozano J.; RT "Sida mosaic Sinaloa virus, a new begomovirus isolated from a weed with a RT mixed infection"; RL Unpublished. XX RN [2] RP 1-2605 RA Mauricio-Castillo J.A., Arguello-Astorga G.R., Mendez-Lozano J.; RT ; RL Submitted (29-APR-2006) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica, A.C., Camino a la Presa San Jose 2055, San Luis Potosi, SLP RL 78231, Mexico XX DR MD5; 8a0fd2995870a68a6e98fba60347bfe4. XX FH Key Location/Qualifiers FH FT source 1..2605 FT /organism="Sida mosaic Sinaloa virus" FT /segment="A" FT /host="Sida sp." FT /isolate="Guasave-Sinaloa" FT /mol_type="genomic DNA" FT /country="Mexico" FT /collection_date="2005" FT /note="mixed infection with Chino del tomate virus" FT /db_xref="taxon:367850" FT gene 186..941 FT /gene="AV1" FT CDS 186..941 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="capsid protein; CP; AR1" FT /db_xref="GOA:Q19LF7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q19LF7" FT /protein_id="ABF67531.1" FT /translation="MPKRDLPWRSIAGTSKVSRNANYSPRAGNGPRNNKASEWVNRPMY FT RKPRIYRTLRTPDVPRGCEGPCKVQSFEQRHDILHTGRVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT gene complement(938..1336) FT /gene="AC3" FT CDS complement(938..1336) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="rep-interacting protein; AC3; AL3" FT /db_xref="GOA:Q19LF6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q19LF6" FT /protein_id="ABF67534.1" FT /translation="MDSRTGEFVTAHQAENGVYIWEIENPLYFRMFHVEEPIHTRSKVY FT HVQIRFNHNLRKALDLHKAYLNFQVWTTSMTASGSTYLARFRRLVNMYLDDLGVISINN FT VIRAVRFATDKSYVSYVLESHSIKLKIY" FT gene complement(1083..1472) FT /gene="AC2" FT CDS complement(1083..1472) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein TrAP" FT /note="transcription factor; regulation of virus late genes FT expression, suppressor of the plant silencing response; FT AL2" FT /db_xref="GOA:Q19LF5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q19LF5" FT /protein_id="ABF67533.1" FT /translation="MQSSSPSHPPSIKTAHRQAKRRAIRRRRIDLECGCPIYFHIGCIG FT HGFTHRGIRHCTSGREWRVYLGDRKSPLFQDVPCRRANTYEEQGVPRTDTIQPQPEESV FT GSPQSLPELPSLDDIDDSFWVDLFS" FT gene complement(1384..2469) FT /gene="AC1" FT CDS complement(1384..2469) FT /codon_start=1 FT /gene="AC1" FT /product="replication protein" FT /note="rolling-circle initiator protein; initiator of virus FT replication via a RC mechanism; Rep; AL1" FT /db_xref="GOA:Q19LF4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q19LF4" FT /protein_id="ABF67532.1" FT /translation="MPRKGSFSVKARNYFLTYPECSLSKEEALSQLLNLKTPVNQKFIR FT VCREFHKNGEPHLHVLIQFEGKYNCTNNRLFDLVSPTRSTHFHPNIQGAKSSSDVKSYI FT EKDGDTVDWGEFQIDGRSSRGGQQSANDSYAKALNAGSVQAAMAVLKEEQPKDFVLQNH FT NIRSNLEKIFAKAPERWVPPFQLSSFTKVPDEMQAWADEYFGRGSAARPERPVSIIIEG FT DSRTGKTMWARALGPHNYLSGHLDFNPRVYSNEVEYNVIDDVAPQYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLNKEENTSLRNWTIKNAIFITLT FT SALYQDSTQASQEEGDKETAD" FT gene complement(2055..2312) FT /gene="AC4" FT CDS complement(2055..2312) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /note="AL4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q19LF3" FT /protein_id="ABF67535.1" FT /translation="MGSLISTFSSSSKANTTARITDCSIWSPQPGQHISIQTYRELNPA FT PTSSPTSRRTEIQLTGENSRSTADLLGEVSSQLTIHMPRR" XX SQ Sequence 2605 BP; 638 A; 596 C; 613 G; 758 T; 0 other; accgatggcc gcgcgatttc cccccctcgc gcgaatcgcc cacttaattc ggataaagtg 60 cccgcgcagc gtgtcgtcca atcatgtaac gcctgacgag tctagatatt ttaaacaact 120 tggccctaag ttgtaatatg ttcgttataa ttaaagtggt cttggcccat tatctttaat 180 tcaaaatgcc taagcgcgat ctcccatggc gctcgatcgc gggaacttcg aaggttagtc 240 gcaatgctaa ttattctcct cgtgcaggaa atgggcccag aaataataag gcctcggaat 300 gggtgaacag gcccatgtac aggaagccca ggatctaccg gactctaaga acgcccgacg 360 tgccaagagg ctgtgaaggc ccgtgtaagg tccagtcctt tgaacagcgt cacgatattt 420 tacatactgg gagggtaatg tgcatatctg atgtgacacg tggtaacggt atcacccatc 480 gggttggtaa gcgtttctgt gttaagtctg tgtatatcct tggcaagata tggatggatg 540 agaacatcaa gttgaagaac cacacgaaca gtgttatgtt ctggttggtc agagatcgtc 600 gaccctatgg cacgcctatg gacttcggtc aggtgttcaa catgttcgac aacgagccca 660 gcactgcgac ggtgaagaac gatctccgtg atcgttatca ggtcatgcac aagttctatg 720 gcaaggtgac aggtggacag tatgccagca acgagcaggc tatagtcaaa cgcttctgga 780 aggtcaacaa tcatgtggtg tacaatcatc aagaggctgg caaatatgag aatcatacag 840 agaacgctct gttattgtat atggcatgta cacatgcctc taatcctgta tatgcaacgc 900 ttaagattcg aatctatttc tacgattcga tcatgaatta ataaattttt aattttattg 960 aatgagattc cagtacataa cttacgtacg acttgtctgt tgcgaagcga acagctctaa 1020 ttacattgtt aattgaaatg acgcctaagt catctaaata catattaact aatcgtctaa 1080 acctagctaa ataggtcgac ccagaagctg tcatcgatgt cgtccagact tggaagttca 1140 ggtaggcttt gtggagatcc aacgctttcc tcaggttgtg gttgaatcgt atctgtacgt 1200 ggtacacctt gctcctcgta tgtattggct cttctacatg gaacatcctg aaatagaggg 1260 gattttctat ctcccagata tacacgccat tctctgcctg atgtgcagtg acgaattccc 1320 ctgtgcgtga atccatgtcc aatacagcct atgtggaagt agatggggca cccgcactct 1380 aaatcaatcc gccgtctcct tatcgccctc ctcttggctt gcctgtgtgc tgtcttgata 1440 gagggcggat gtgagggtga tgaagattgc attcttgatg gtccagttcc tgagggaggt 1500 gttttcctcc ttgttcagga aatctttata gctagcaccc tcaccaggat tgcaaagcac 1560 gattgatggg atcccacctt taatttgaac tggctttccg tatttgcaat ttgactgcca 1620 gtccttctgg gcccccagaa gttctttcca gtgctttagc tttagatatt gcggtgcgac 1680 gtcatcaatg acgttatact ccacttcgtt tgagtacact cttgggttga agtccagatg 1740 tccactaagg taattgtgtg ggcctaaggc acgagcccac atcgtcttcc ctgtcctcga 1800 gtcaccttct atgatgatac ttactggtct ctcaggccgc gcagcggaac cccttccaaa 1860 atattcgtcc gcccatgctt gcatctcgtc cggaacttta gtgaacgagg atagttgaaa 1920 cggaggaacc catcgttccg gagcctttgc gaatattttc tctaggttgg atcgtatgtt 1980 atggttttgc agcacaaaat cctttggctg ttcttctttt aaaaccgcca tggcagcttg 2040 aacagatcct gcattcaacg ccttggcata tgaatcgtta gctgactgct gacctcccct 2100 agaagatctg ccgtcgatct ggaattctcc ccagtcaact gtatctccgt ccttctcgat 2160 gtaggacttg acgtcggagc tggatttagc tccctgtatg tttggatgga aatgtgttga 2220 cctggttggg gagaccagat cgaacaatct gttattcgtg cagttgtatt tgccttcgaa 2280 ctggatgaga acgtggagat gaggctcccc attcttatgg aattccctgc atactctgat 2340 gaatttctgg ttaactggtg tttttaggtt tagtaattgg gaaagtgctt cttctttgct 2400 aagagaacac tctggatatg tgaggaaata gtttctggct tttactgaga aagaaccctt 2460 tcgtggcata tttgtaaata tgggtgttcc cccgaatagc tctctcgctc aaaactcata 2520 tccaattggg ggaactgggg gaacatatat actaaaagtc tctgtgtagg atctttcgac 2580 acgtggcggc catccgctat atatt 2605 //