ID DQ520943; SV 1; circular; genomic DNA; STD; VRL; 2614 BP. XX AC DQ520943; XX DT 28-MAY-2006 (Rel. 87, Created) DT 28-MAY-2006 (Rel. 87, Last updated, Version 1) XX DE Tomato golden mottle virus segment A, complete sequence. XX KW . XX OS Tomato golden mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2614 RA Mauricio-Castillo J.A., Arguello-Astorga G.R., Gregorio-Jorge J., RA Ambriz-Granados S., Alpuche-Solis A.G., Monreal-Vargas C.T.; RT "First Report of Tomato golden mottle virus in Mexico"; RL Unpublished. XX RN [2] RP 1-2614 RA Mauricio-Castillo J.A., Monreal-Vargas C.T., Ambriz-Granados S., RA Arguello-Astorga G.R.; RT ; RL Submitted (29-APR-2006) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica, A.C., Camino a la Presa San Jose 2055, San Luis Potosi, SLP RL 78231, Mexico XX DR MD5; a610b933953ccf3fbafdd031fd41d4c5. XX FH Key Location/Qualifiers FH FT source 1..2614 FT /organism="Tomato golden mottle virus" FT /segment="A" FT /host="Lycopersicon sculentum" FT /isolate="Rioverde-SLP" FT /mol_type="genomic DNA" FT /country="Mexico" FT /collection_date="2005" FT /db_xref="taxon:223342" FT gene 197..952 FT /gene="AV1" FT CDS 197..952 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="capsid protein; CP; AR1" FT /db_xref="GOA:Q19LG2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q19LG2" FT /protein_id="ABF67526.1" FT /translation="MPKRDAPWRLMGGTSKVSRSSNQSPRTGTGPKFDKAHAWVNRPMY FT RKPRIYRAWRTPDVPRGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATV FT KNDLRDCYQVVHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHAFNPVYATLKIRIYFYDSISN" FT gene complement(949..1347) FT /gene="AC3" FT CDS complement(949..1347) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="rep-interacting protein; AC3; AL3" FT /db_xref="GOA:Q19LG1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q19LG1" FT /protein_id="ABF67529.1" FT /translation="MDSRTGEPITARQAGNGVFIWDVPNPLYFKIYNVEDLLYTNIRIY FT HVQIRFNHNVRKALDLHKAYLNFQVWTTSLTASGTTYLNRFRSLVLLYLDRLGVISLNN FT VIRAVRFATDKPYVNHVLERHSIKFKIY" FT gene complement(1088..1483) FT /gene="AC2" FT CDS complement(1088..1483) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein TrAP" FT /note="transcription factor; silencing suppressor; FT regulation of virus late genes expression, suppressor of FT the plant silencing response; AL2" FT /db_xref="GOA:Q19LG0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q19LG0" FT /protein_id="ABF67528.1" FT /translation="MQNSSSSTPPSIKPKHRIAKRKGIRRKRIDLDCGRTIYVHINCAN FT NGFTHRGTHHCSSSREWRFYLGCSKSPLFQDIQRRGSPIHEHQDIPRADQVQPQREESF FT GSTQGIPKFPSLDDIPDGFWDDLFESV" FT gene complement(1440..2480) FT /gene="AC1" FT CDS complement(1440..2480) FT /codon_start=1 FT /gene="AC1" FT /product="replication protein" FT /note="rolling-circle initiator protein; initiator of virus FT replication via a RC mechanism; Rep; AL1" FT /db_xref="GOA:Q19LF9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q19LF9" FT /protein_id="ABF67527.1" FT /translation="MPPPRRFRLQAKNIFLTYPLCSLTKDEALEQLQSIQLTSNKRYIK FT ICRELHENGKPHLHALVQLEGKVQITNERQFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDSYAKALNANGVQEALQILKEEQPRDFVKDFH FT NLKGNLEKIFTKAPEPWVPPFSLSSFNNVPEELQSWADDYFGNGCAARTLRPISIIIEG FT DSRTGKTMWARSLGIHNYLSGHLDFNSRVYSNDVMYNVIDDVPPHYLKMKHWKELIGAQ FT TDWQTNCKYGKPIQIKGGIPSIVLCNPGEGASYKYYLDKQENSHLKAWTHHNAEFVFLD FT APLYQT" FT gene complement(2030..2323) FT /gene="AC4" FT CDS complement(2030..2323) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /note="AL4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q19LF8" FT /protein_id="ABF67530.1" FT /translation="MGNLISMPLSNLKEKSRSRMNDSSIWYPQPDQHISIRTFRELNLV FT PMSNHISTKMEIPSNGENFKSMADLLEEVSRLQTTRMPRRLTQMECKRHSKF" XX SQ Sequence 2614 BP; 688 A; 522 C; 602 G; 802 T; 0 other; accggatggc cgcgcgattt ttacccgacc cgggcccatt aatgaaatat tctcgggtta 60 tgcaatgatg ataaatatgg ctgtccaatc acatgacgtc tgctgggtct aattagtggt 120 ccttggtaga caagaatgga cccggatatc tataaatatt aaagtgaatc ccactattgt 180 atatctttaa tttgaaatgc caaagcgcga tgctccgtgg cgattgatgg gggggacctc 240 aaaagtgagc cggtcctcca accagtctcc caggactggt actgggccta aatttgacaa 300 ggcccatgca tgggttaaca ggcctatgta caggaagccc aggatatatc gggcttggag 360 aacacccgac gttcctagag gctgtgaagg cccatgtaag gtccagtcat ttgaacaacg 420 tcatgatatc tcccatgttg gtaaggtgat gtgcatatcg gacgtcaccc gtggtaacgg 480 tatcactcac cgcgttggta agcgtttttg tgttaagtcc gtgtatatat taggcaagat 540 ctggatggat gacaacatca aattgaagaa ccacacgaac agtgtcatgt tctggttggt 600 cagggatagg agaccatatg gtactcctat ggattttggc caagtgttca atatgtacga 660 caatgagcct agtactgcta ctgtgaagaa cgatcttcgt gattgttatc aggtagtcca 720 cagattttat gctaaggtca ctggtggtca gtatgccagc aatgagcagg ctcttgtcag 780 acgattctgg aaggtgaaca accatgtggt gtacaaccat caggaagccg ggaagtatga 840 gaaccacaca gagaatgctc tgttattgta tatggcgtgt actcatgctt ttaatcctgt 900 atatgcaact ttgaaaattc ggatctattt ttatgattcg ataagtaatt aataaatttt 960 gaattttatt gaatgtcttt ctaatacatg atttacatat ggtttatctg ttgcgaagcg 1020 aacagcacga atgacattat taagtgaaat aacacctaat ctatctaagt acaataaaac 1080 taaactccta aaccgattca aataagtcgt cccagaagcc gtcagggatg tcgtccagac 1140 ttggaaattt aggtatgcct tgtgtagatc caaagctttc ctcacgttgt ggttgaacct 1200 gatctgcacg tggtatatcc tgatgttcgt gtataggaga tcctctacgt tgtatatctt 1260 gaaatagagg ggatttggaa catcccaaat aaaaacgcca ttccctgctt gacgagcagt 1320 gatgggttcc cctgtgcgtg aatccattgt tggcgcagtt gatgtgcacg tatattgtac 1380 ggccgcagtc caagtctata cgttttcgac gtattccctt tcgttttgca atcctgtgtt 1440 taggtttgat agaggggggc gtcgaggaag acgaattctg cattgtgatg tgtccacgcc 1500 ttgagatgtg agttttcctg tttgtcgagg tagtatttat agctagcccc ctcaccagga 1560 ttgcatagca cgattgatgg aatgccacct ttaatttgaa tgggtttccc gtatttacag 1620 ttggtctgcc agtctgtctg ggccccaatg agctctttcc agtgtttcat ctttagatag 1680 tgcggtggta cgtcatcaat gacgttgtac ataacatcgt ttgagtaaac tctagaattg 1740 aaatctagat gaccactcaa ataattatga attcctaatg aacgagccca catcgtcttt 1800 cccgttcttg aatcaccttc gatgatgata ctgataggtc ttaatgtccg cgcagcgcaa 1860 ccatttccaa aataatcatc agcccatgac tgtaactcct caggcacgtt gttaaatgag 1920 gagagtgaaa atggaggaac ccatggttct ggagcttttg taaatatctt ctcaaggtta 1980 cccttgagat tgtgaaaatc tttaacaaaa tccctaggtt gttcttcctt taaaatttgg 2040 agtgcctctt gcactccatt tgcgttaagc gccttggcat acgagtcgtt tgcagtctgc 2100 tgacctcctc tagcagatct gccatcgatt tgaaattctc cccattcgag ggtatctcca 2160 tctttgtcga tatatgattt gacatcggaa ctagatttag ctccctgaat gttcggatgg 2220 aaatgtgctg atctggttgg ggataccaga tcgaactgtc gttcattcgt gatctggact 2280 tttccttcaa gttggacaag ggcatggaga tgaggtttcc cattctcgtg aagctctctg 2340 caaatcttga tatatcgttt attcgaagtt agttgtattg attgtaattg ctctaatgct 2400 tcatctttag taagagagca taatgggtat gttaggaata tattttttgc ttgaagtctg 2460 aaacgtcttg gtggtggcat atttgtaatt aaagggtgta ctccaattga gctcctctca 2520 acttggcgaa acaaattgga gtattggagt acaatttata ctaaaaccta agatagcgct 2580 tggagacacg tggcggccat ccgtttataa tatt 2614 //