ID DQ481606; SV 1; linear; genomic RNA; STD; VRL; 3599 BP. XX AC DQ481606; XX DT 04-NOV-2006 (Rel. 89, Created) DT 11-MAR-2007 (Rel. 91, Last updated, Version 2) XX DE Ryegrass mottle virus isolate Jap2 P2a2b, P2a, and CP genes, complete cds. XX KW . XX OS Ryegrass mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-3599 RX DOI; 10.1007/s00705-006-0867-z. RX PUBMED; 17115301. RA Meier M., Truve E.; RT "Sobemoviruses possess a common CfMV-like genomic organization"; RL Arch. Virol. 152(3):635-640(2007). XX RN [2] RP 1-3599 RA Meier M., Truve E.; RT ; RL Submitted (05-APR-2006) to the INSDC. RL Department of Gene Technology, Tallinn University of Technology, Akadeemia RL tee 15, Tallinn 12618, Estonia XX DR MD5; 0f5ca69bf1b63304338c373883ee0fbf. DR EuropePMC; PMC3791421; 23830075. XX FH Key Location/Qualifiers FH FT source 1..3599 FT /organism="Ryegrass mottle virus" FT /isolate="Jap2; MAFF PV-307043" FT /mol_type="genomic RNA" FT /country="Japan" FT /db_xref="taxon:119910" FT CDS join(45..1250,1250..2887) FT /codon_start=1 FT /ribosomal_slippage FT /product="P2a2b" FT /note="ORF2a2b; serine protease; VPg; RNA-dependent RNA FT polymerase" FT /db_xref="GOA:A0MCW0" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="PDB:6FEZ" FT /db_xref="PDB:6FF0" FT /db_xref="UniProtKB/TrEMBL:A0MCW0" FT /protein_id="ABF22688.1" FT /translation="MYGSIVSMVVQAALAFLLSKDPESRTAVRGLLASLTGTALILGWQ FT LLCVLRAWLATSLEKEPEAPEDSWIDLCGPPRFDPSKGVYGEVLIDGKQHRVVIQPDFW FT PLLRSAINIDRDEAAVANSIVSSVAPGKEPGSLVCIQAKDGKVIGMGARVHCGPATVLV FT TAGHVLKKGMIADLYLAKYSVSSKEGKRVLMDPTWKIEYGSLNKEADVISVQVPAAVWS FT RLGVTAARVRKPTVKVPVLAYGGEASGLLQSSQGFATPDGNMSVAHSCSTRPGWSGTPL FT YAGSDIVAIHRRWEDIGVKNLATNLSIFHANCESSENGEQGAREIDAEEWISREVTPTD FT VYIAGRGKYRVAGDEFSHSSYDPLAFSKYKKERGEMTWADMVEGDLDWDAREESTGNDI FT PLNLPAGGEQVLVAVRDMSGIVWSDGEILTTTGMPLIDCGRSRVKFRETARTSTNELCR FT NAEQHFGDLADLSWPERGSKAERVSLLFQAGRFRPTEAPDNLDSACRELEREYPRSKQR FT ACLWGETWNSESLKEKIQEIAQRDIKRDSSPGVPLSLIGTTNGAVLDSSMTLVVEAVWA FT RLEALSRIELSPDVTPPELIQLGLCDPVRLFIKQEPHPLRKVRTGRLRLISSVSLLDQL FT VERVLFGFQNNLEISRWKQCPSKPGMGLTSKEQSDALWDELKFKSTLAPAAEADISGFD FT WSVQHWELMADVEMRIRLGDFSNLAARAARNRFTCLSNSVFQLSDGTLISQGLPGLMKS FT GSYCTSSSNSRIRCLMAKIIGSRWCIAMGDDSVEGWVDNAVEKYHALGHECKEYSACAR FT TYVSGSGEQTLQTVNFCSHELSEGKCHLTTWSKTLFRFFHSTAPCIRSLEMELAGSPQW FT PKIYRYLRRVGLAPDKDGKEEGQIGQPSNRFEGEIPEETTEKQRPTTHQTGYTGFSAGR FT DGDPDYLSGTPSCNSVW" FT CDS 45..1706 FT /codon_start=1 FT /product="P2a" FT /note="ORF2a; serine protease; VPg" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:A0MCW1" FT /protein_id="ABF22687.1" FT /translation="MYGSIVSMVVQAALAFLLSKDPESRTAVRGLLASLTGTALILGWQ FT LLCVLRAWLATSLEKEPEAPEDSWIDLCGPPRFDPSKGVYGEVLIDGKQHRVVIQPDFW FT PLLRSAINIDRDEAAVANSIVSSVAPGKEPGSLVCIQAKDGKVIGMGARVHCGPATVLV FT TAGHVLKKGMIADLYLAKYSVSSKEGKRVLMDPTWKIEYGSLNKEADVISVQVPAAVWS FT RLGVTAARVRKPTVKVPVLAYGGEASGLLQSSQGFATPDGNMSVAHSCSTRPGWSGTPL FT YAGSDIVAIHRRWEDIGVKNLATNLSIFHANCESSENGEQGAREIDAEEWISREVTPTD FT VYIAGRGKYRVAGDEFSHSSYDPLAFSKYKKERGEMTWADMVEGDLDWDAREESTGNDI FT PLNCQQAASKCSSPCVTCPESSGVTEKSSPQQACPSLTVEDRVSNLEKLLERVLTSSAE FT TQSNISVISQTLVGLKEARKQKELVCSSRQADSAPQKPPTTSTARAENLSENTPGPSSE FT PASGGKLGTQKASKKRSKKSRKGTSSGTPVQGSPSA" FT CDS 2706..3413 FT /codon_start=1 FT /product="CP" FT /note="coat protein; ORF4" FT /db_xref="GOA:A0MCW2" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A0MCW2" FT /protein_id="ABF22689.1" FT /translation="MARKKGKSASQVIVLKEKSRKKRQKSRGQQPTRQVTPVSAPAAMG FT TQITYRGPQVVTQYGDITPAKNSGSLVRVTSSATAGTEVSGTVLFNVRNATELPWLSGQ FT GSRYSKYRVRYAHFTWEPIVGSNTNGEVAMAMLYDVADVTSITIERLMQTRGGTWGPIW FT SPTRKRLSYDPEHASLPWYLSGVSSGAAAGNIQTPFQITWAAQSSLVSTTLGRIMAEYL FT VELTDPVDVTINQ" XX SQ Sequence 3599 BP; 875 A; 902 C; 1034 G; 788 T; 0 other; gtactccctc ggcagactat tctgttgcgt ctcccatagt gaagatgtac gggtcaatag 60 taagcatggt ggttcaggcg gcgctcgctt tcctactgtc caaggaccca gagtccagga 120 ctgcggtgag agggctgcta gcatcactaa cggggacggc tctgatcctg gggtggcaac 180 tgctgtgcgt cttgcgcgct tggctagcaa cctctctgga aaaggaaccg gaagctccgg 240 aagactcctg gattgatctg tgtggtccgc cacgctttga tccatcgaaa ggagtttatg 300 gagaggtgct catcgatggg aagcagcatc gggttgtgat ccaacccgat ttctggcctc 360 ttttacggtc tgcgataaat atagatcgtg atgaggctgc tgtggctaat tccatcgtct 420 cttcggtggc accggggaaa gagccaggct ctctagtttg catccaagca aaggatggca 480 aagtgattgg gatgggggct cgagtccact gcggacccgc cactgtcctc gtcaccgccg 540 gtcatgttct gaagaagggc atgattgcag acttatacct ggcgaagtac tctgtgtcga 600 gtaaagaggg aaagcgtgtc ctgatggacc cgacctggaa gattgaatac ggctccctga 660 acaaggaggc tgatgtgata tcggtacagg tccccgcggc tgtgtggtct cgccttggcg 720 tgaccgccgc ccgcgtgcgg aagcctactg ttaaagtacc agtcctcgcc tatggtgggg 780 aggcttccgg gctcctacaa tcctcgcaag gttttgcgac tccagatggc aatatgtctg 840 tggcccattc atgctcaacc cgtccagggt ggagcgggac acccctgtac gcagggtcag 900 acattgttgc cattcaccga agatgggagg atataggcgt caagaatttg gcgacgaacc 960 tctccatttt ccatgcaaac tgtgaatcca gtgaaaacgg agagcaggga gcgcgcgaga 1020 tcgacgctga ggaatggata tctcgagagg taactccgac ggacgtgtac attgcaggcc 1080 gagggaaata cagagttgct ggagatgaat tctcccactc aagttatgat cctctggctt 1140 tctctaagta caagaaggag agaggtgaga tgacgtgggc tgatatggtg gaaggcgatc 1200 ttgattggga cgcccgtgaa gaatccacag gaaatgatat tcctttaaac tgccagcagg 1260 cggcgagcaa gtgctcgtcg ccgtgcgtga catgtccgga atcgtctgga gtgacggaga 1320 aatcctcacc acaacaggca tgcccctcat tgactgtgga agatcgcgtg tcaaatttag 1380 agaaactgct agaacgagta ctaacgagct ctgccgaaac gcagagcaac atttcggtga 1440 tctcgcagac cttagttggc ctgaaagagg ctcgaaagca gaaagagtta gtttgctctt 1500 ccaggcaggc agattccgcc ccacagaagc ccccgacaac ctcgacagcg cgtgccgaga 1560 acttgagcga gaataccccc ggtccaagca gcgagcctgc ctctgggggg aaacttggaa 1620 ctcagaaagc ctcaaagaaa agatccaaga aatcgcgcaa agggacatca agcgggactc 1680 cagtccaggg gtccccctca gcttgattgg aactacaaat ggggcagtcc tggactcctc 1740 catgaccttg gttgtggagg ctgtctgggc gcgactcgag gcgctttccc gaatagaact 1800 aagccccgat gtgactcctc ctgagttgat acaactaggt ctttgcgacc cagtgcgtct 1860 cttcataaaa caggagcccc atccactcag gaaagttcgg actggcaggt tgaggctgat 1920 ttcatcggta tccctgttgg accaactggt tgagagggtt cttttcggtt ttcagaataa 1980 cctcgagata agccgatgga agcagtgtcc atcgaaaccc ggaatgggtc tcacttctaa 2040 ggagcaatcc gatgcgttgt gggacgagct gaagttcaag tccaccctag cccccgcggc 2100 tgaggcggac atatcgggat tcgattggtc agtgcaacac tgggagctaa tggcggatgt 2160 cgaaatgaga attcgactcg gagacttcag caaccttgct gcaagggctg ctaggaacag 2220 gtttacttgt ttgtcgaact cggttttcca actgagtgat ggcaccctga tttctcaggg 2280 actaccaggc ctaatgaagt ccgggtctta ttgcacttcg agctcaaatt cacggataag 2340 atgcctaatg gcgaagatca tcggctcacg atggtgtata gccatgggtg atgattccgt 2400 ggagggttgg gttgacaatg ctgtagaaaa gtatcatgca cttggtcatg agtgtaaaga 2460 atactcagca tgcgcccgga catacgtgag cgggagcgga gaacaaaccc ttcaaacggt 2520 taatttctgc tcgcacgagt tgtccgaggg taagtgtcat cttacgacct ggagcaaaac 2580 gcttttccga ttcttccata gtacggctcc gtgcattagg agtctggaaa tggaattagc 2640 gggcagcccc cagtggccca aaatctatcg gtacctgcgt cgggtgggct tagcgcccga 2700 caaagatggc aaggaagaag ggcaaatcgg ccagccaagt aatcgttttg aaggagaaat 2760 cccggaagaa acgacagaaa agcagaggcc aacaacccac cagacaggtt acaccggttt 2820 cagcgccggc cgcgatgggg acccagatta cttatcgggg accccaagtt gtaactcagt 2880 atggtgacat cacccccgcc aagaactctg gctctttagt acgcgtcaca tccagtgcca 2940 ccgccggcac ggaggtgagc ggcacggtgc tctttaacgt acgcaatgcg actgagctac 3000 cgtggctatc tgggcaaggg tcccgctatt cgaagtacag ggtgaggtat gcacacttca 3060 cctgggaacc aattgtggga tccaacacca atggcgaggt agccatggct atgctgtatg 3120 atgttgctga tgtgactagc atcactatcg agcgactgat gcagacgaga ggtggaactt 3180 ggggacctat ctggtctccg actaggaagc ggctcagtta tgaccctgag cacgcttctc 3240 taccttggta cctaagtgga gtctcctcag gcgccgcggc aggtaatatc cagactccct 3300 tccagataac ttgggctgcc caatcttcat tggttagcac aacgctaggc agaataatgg 3360 ctgagtactt ggtggagttg accgatccgg ttgatgtcac aatcaaccag tgagacctga 3420 gctcaaggtt aacgagcgac cccttgggct gggggtatat aaatacgcaa tgccacttcg 3480 gtgacaggcg ccggcaggct ccgcctacat gggggttaat ccagagtccc tgaagactat 3540 aaactcgaag tcccagatga ctctaaactc gtgaactgtc ggcacaccta gcgtagggg 3599 //