ID DQ458791; SV 1; circular; genomic DNA; STD; VRL; 2566 BP. XX AC DQ458791; XX DT 02-APR-2007 (Rel. 91, Created) DT 17-MAR-2013 (Rel. 116, Last updated, Version 3) XX DE Chickpea chlorotic dwarf virus, complete genome. XX KW . XX OS Chickpea chlorotic dwarf virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2566 RX DOI; 10.1007/s00705-006-0933-6. RX PUBMED; 17347772. RA Halley-Stott R.P., Tanzer F., Martin D.P., Rybicki E.P.; RT "The complete nucleotide sequence of a mild strain of Bean yellow dwarf RT virus"; RL Arch. Virol. 152(6):1237-1240(2007). XX RN [2] RP 1-2566 RA Halley-Stott R.P., Fiona T., Martin D.P., Rybicki E.P.; RT ; RL Submitted (22-MAR-2006) to the INSDC. RL Molecular and Cell Biology, University of Cape Town, University Avenue, RL Cape Town, WP 7701, South Africa XX DR MD5; 2bdf0c128167bee2552cc43b0eb0e742. DR EuropePMC; PMC4585055; 26436119. DR EuropePMC; PMC4635538; 26541286. XX FH Key Location/Qualifiers FH FT source 1..2566 FT /organism="Chickpea chlorotic dwarf virus" FT /isolate="mild" FT /mol_type="genomic DNA" FT /country="South Africa" FT /note="originally submitted as Bean yellow dwarf virus" FT /db_xref="taxon:463360" FT misc_feature join(2400..2566,1..128) FT /note="long intergenic repeat; LIR; spans stem loop" FT gene 129..407 FT /gene="V1" FT CDS 129..407 FT /codon_start=1 FT /gene="V1" FT /product="V1" FT /note="putative movement protein" FT /db_xref="GOA:O39519" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/Swiss-Prot:O39519" FT /protein_id="ABE67100.1" FT /translation="MERILYQVFPLDTNYSYDPPAVTAPSQGSSQTDFGKVVVALVVIL FT VSVGVFYLAYSLFLKDCILLFKAKKQRTTTEIGFGQTPARNQDHPGP" FT gene 420..1157 FT /gene="V2" FT CDS 420..1157 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /db_xref="GOA:O39520" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/Swiss-Prot:O39520" FT /protein_id="ABE67101.1" FT /translation="MSTVTWGKKRKRSGGDSKAKSRGSSSYIPRSVSSRRESLQVATFS FT WTSSGSGIKFSPGGAAYLVSNFPQGANDNCRHTNKTVLYKFMAKNTIYLDSSHYMKVFR FT APFHFWLVYDKSPGANVPSTGDIFEGPSLFPHNPWTWTVSRAACHRFVVKKTWSCVVES FT NGIDPTKGQGATYYGPGPCNQVKSCNKFFKRLGVSTEWKNSATGDVGDIKEGALYIVGA FT PSQKSDVYVNGYFRVYFKSVGNQ" FT misc_feature 1154..1312 FT /note="small intergenic region; SIR" FT gene complement(1310..2400) FT /gene="C1:C2" FT CDS complement(join(1310..1723,1810..2400)) FT /codon_start=1 FT /gene="C1:C2" FT /product="RepA" FT /note="replication-associated protein" FT /db_xref="GOA:O39522" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:O39522" FT /protein_id="ABE67102.1" FT /translation="MPSASKNFRLQSKYVFLTYPKCSSQRDDLFQFLWEKLTPFLIFFL FT GVASELHQDGTTHYHALLQLDKKPCIRDPSFFDFEGNHPNIQPARNSKQVLDYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWATKLQWLEYSANK FT LFPPQPEPYVSPFTESDLRCHEDLHSWRETHLYHDNGRNGIRHPSLYICGPTRTGKTTW FT ARSLGRHNYWNGTIDFTNYDEHATYNIIDDIPFKFVPLWKQLIGCQSDFTVNPKYGKKK FT KIKGGIPSIILCNPDEDWMLSMTSQQKDYFKDNCVTHYMCDGETFFARESSSH" FT gene complement(1522..2400) FT /gene="C1" FT CDS complement(1522..2400) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /db_xref="GOA:O39521" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/Swiss-Prot:O39521" FT /protein_id="ABE67103.1" FT /translation="MPSASKNFRLQSKYVFLTYPKCSSQRDDLFQFLWEKLTPFLIFFL FT GVASELHQDGTTHYHALLQLDKKPCIRDPSFFDFEGNHPNIQPARNSKQVLDYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWATKLQWLEYSANK FT LFPPQPEPYVSPFTESDLRCHEDLHSWRETHLYHVSIDAYTYIHPVSYQQAQSDLEWMA FT DLTRTMEGMESDTPASTSADQLVPERPPGLEVSDDTTIGTVPSISPTTMNTPPIISSTT FT SPSSSSHCGSN" XX SQ Sequence 2566 BP; 689 A; 479 C; 644 G; 754 T; 0 other; accggcgtgg ccccccctta tcgcgagtgc tttagcacga gcggtccaga tttaaagtag 60 aaaatttccc gcccactagg gttaaaggtg ttcacactat aaaagcatat acgatgtgat 120 ggtatttgat ggagcgtata ttgtatcagg tatttccgtt ggatacgaat tattcgtacg 180 accctcctgc agttactgct ccttcacagg gttcatctca aacggatttc ggtaaggttg 240 ttgttgcttt ggtggttatc ttggtcagcg taggtgtttt ctatctggcc tatagtttgt 300 tcttgaagga ctgcatcctt ctgttcaagg cgaagaagca gagaaccaca accgaaatcg 360 ggtttggaca aaccccggct agaaatcagg atcatccagg accgtaggcg gggtgcatca 420 tgtctactgt gacatggggt aagaagcgga agcgaagcgg aggggattct aaggcgaaga 480 gtaggggctc cagttcgtat attccgagat ctgtctcatc caggagggaa tcgttgcagg 540 ttgctacctt ttcctggacg agttccggtt cgggtataaa gttttctccc ggtggtgctg 600 cgtatcttgt gagcaatttt ccacagggtg ccaacgataa ttgtcgtcac accaacaaga 660 ccgtgttata caaattcatg gccaagaata ctatatactt ggactctagt cactatatga 720 aagtgtttag agctccattt catttttggc tggtgtacga caagtctcct ggtgctaatg 780 ttcccagtac tggggatata tttgagggac cttcgttgtt tcctcataat ccttggacgt 840 ggactgtgtc tagggctgcc tgccatcgtt ttgtggtgaa gaaaacgtgg tcatgcgtgg 900 tggagagcaa tggtatcgac ccaaccaaag gtcaaggagc tacttattat gggcctgggc 960 cttgtaatca ggttaagtcc tgtaataagt tctttaagag gttgggtgtg tccacagagt 1020 ggaaaaatag tgcaacgggt gatgttggtg atataaagga aggagccctt tacattgttg 1080 gtgctccttc ccaaaagtcc gatgtatatg taaatggtta tttccgagtg tacttcaagt 1140 cagtgggaaa tcaataaaat gattatttta tgaatatatt tcattgtgca agtagataga 1200 aattacatat gttacataac acacgaaata aacaaaaaaa gacaatccaa aaacaaacac 1260 cccaaaaaaa ataatcactt tagataaact cgtatgagga gaggcacgtt cagtgactcg 1320 acgattcccg agcaaaaaaa gtctccccgt cacacatgta gtgggtgacg caattatctt 1380 taaagtaatc cttctgttga cttgtcattg ataacatcca gtcttcgtca ggattgcaaa 1440 gaattataga agggatccca ccttttattt tcttcttttt tccatattta gggttgacag 1500 tgaaatcaga ctggcaacct attaattgct tccacaatgg gacgaacttg aaggggatgt 1560 cgtcgatgat attataggtg gcgtgttcat cgtagttggt gaaatcgatg gtaccgttcc 1620 aatagttgtg tcgtccgaga cttctagccc aggtggtctt tccggtacga gttggtccgc 1680 agatgtagag gctggggtgt cggattccat tccttccatt gtcctggtta aatcggccat 1740 ccattcaagg tcagattgag cttgttggta tgagacagga tgtatgtaag tataagcgtc 1800 tatgcttaca tggtatagat gggtttccct ccaggagtgt agatcttcgt ggcagcgaag 1860 atctgattct gtgaagggcg acacatacgg ttcaggttgt ggagggaata atttgttggc 1920 tgaatattcc agccattgaa gctttgttgc ccattcatga gggaattctt ccttgatcat 1980 gtcaagatat tcctccttag acgttgcagt ctggataata gttctccatc gtgcgtcaga 2040 tttgcgagga gagaccttat gatctcggaa atctcctctg gttttaatat ctccgtcctt 2100 tgatatgtaa tcaaggactt gtttagagtt tctagctggc tggatattag ggtgatttcc 2160 ttcaaaatcg aaaaaagaag gatccctaat acaaggtttt ttatcaagct ggagaagagc 2220 atgatagtgg gtagtgccat cttgatgaag ctcagaagca acaccaagga agaaaataag 2280 aaaaggtgtg agtttctccc agagaaactg gaataaatca tctctttgag atgagcactt 2340 gggataggta aggaaaacat atttagattg gagtctgaag ttcttactag cagaaggcat 2400 gttgttgtga ctccgagggg ttgcctcaaa ctctatctta taaccggcgt ggaggcatgg 2460 aggcaggggt attttggtca ttttaataga tagtggaaaa tgacgtggaa tttacttaaa 2520 gacgaagtct ttgcgacaag ggggggccca cgccgaattt aatatt 2566 //