ID   DQ456836; SV 1; linear; genomic DNA; STD; VRL; 1910 BP.
XX
AC   DQ456836;
XX
DT   23-APR-2006 (Rel. 87, Created)
DT   23-APR-2006 (Rel. 87, Last updated, Version 1)
XX
DE   Cotton leaf curl virus isolate Sriganganagar-2 pre-coat protein, coat
DE   protein, replication enhancer protein, and transcription activator protein
DE   genes, complete cds.
XX
KW   .
XX
OS   Cotton leaf curl virus
OC   Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus.
XX
RN   [1]
RP   1-1910
RA   Padmalatha K.V., Malathi V.G.;
RT   "Nucleotide sequences of Cotton leaf curl virus isolated from
RT   Sriganganagar, Rajasthan, India";
RL   Unpublished.
XX
RN   [2]
RP   1-1910
RA   Padmalatha K.V., Malathi V.G.;
RT   ;
RL   Submitted (18-MAR-2006) to the INSDC.
RL   Advanced Centre for Plant Virology, Indian Agricultural Research Institute,
RL   Pusa Road, New Delhi 110 012, India
XX
DR   MD5; 5156ed41b243359e69c87259e16aed85.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1910
FT                   /organism="Cotton leaf curl virus"
FT                   /segment="A"
FT                   /isolate="Sriganganagar-2"
FT                   /mol_type="genomic DNA"
FT                   /country="India:Sriganganagar, Rajasthan"
FT                   /note="acronym: CLCuV"
FT                   /db_xref="taxon:53010"
FT   CDS             131..487
FT                   /codon_start=1
FT                   /product="pre-coat protein"
FT                   /note="AV2"
FT                   /db_xref="GOA:Q1KSG7"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:Q1KSG7"
FT                   /protein_id="ABE77183.1"
FT                   /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSEDYSPDTLGYELIRDL
FT                   ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT                   EAQDVQDVQKSRCS"
FT   CDS             291..1061
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="AV1"
FT                   /db_xref="GOA:Q1KSG6"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q1KSG6"
FT                   /protein_id="ABE77182.1"
FT                   /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQRAWT
FT                   NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR
FT                   VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDIPQDFGEVFNMFDNEP
FT                   STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFARVNNYVVYNQQEAGKYENH
FT                   TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   CDS             complement(1027..1467)
FT                   /codon_start=1
FT                   /product="replication enhancer protein"
FT                   /note="AC3"
FT                   /db_xref="GOA:Q1KSG5"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q1KSG5"
FT                   /protein_id="ABE77185.1"
FT                   /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI
FT                   LTIRIQFNYNTRKALGLHKCSLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL
FT                   VIKAVEHVLYNVIQQTMYVDQYSEIKFKLYNINSLQSHKNIS"
FT   CDS             complement(1160..1612)
FT                   /codon_start=1
FT                   /product="transcription activator protein"
FT                   /note="AC2"
FT                   /db_xref="GOA:Q1KSG4"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:Q1KSG4"
FT                   /protein_id="ABE77184.1"
FT                   /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN
FT                   CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH
FT                   SESSGTAQVFSNIPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN"
XX
SQ   Sequence 1910 BP; 514 A; 373 C; 440 G; 583 T; 0 other;
     accggatggc cgcgcgattt ttttgtgggc cttaccatta acacttgtcg gccaatcata        60
     tgactccctc aaagctaaat aacgctcccg cacactataa gtacttgcgc actaagtttc       120
     aaattcaaac atgtgggatc cactattaaa cgaattccct gatacggttc acgggtttcg       180
     gtgtatgctt tctgtgaaat atttgcaact tttgtcggag gattattcac cggatacgct       240
     tgggtacgag ttaatacggg atttaatttg tattttacgc tcccgtaatt atgtcgaagc       300
     gagctgccga tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg       360
     gcagcccata caccagccgt gctgctgccc ccattgtccg cgtcacaaaa caacgggcat       420
     ggacaaacag gcctatgaac aggaagccca ggatgtacag gatgtacaga agtccagatg       480
     ttcctagagg atgtgaaggt ccatgtaagg ttcagtcgtt tgagtccaga catgatattc       540
     agcatatagg taaagtaatg tgtgttagtg atgttactcg tggtactggg ctgacccata       600
     gagttggtaa gagattttgt gtcaagtctg tttatgtgtt gggtaagata tggatggatg       660
     agaacattaa gacgaagaat cacacgaata gtgtgatgtt tttcttggtt agagatcgta       720
     gacctgttga tatacctcaa gattttggag aggtatttaa tatgtttgat aatgagccca       780
     gtacggcgac tgtgaagaat gttcatcgtg ataggtatca agttctgcgc aaatggtatg       840
     caactgtcac cggtggacaa tacgcttcaa aggaacaggc tttggtcaag aagtttgcca       900
     gagttaacaa ttatgttgtt tacaatcaac aggaagcagg aaaatacgag aatcatacgg       960
     aaaatgcgtt aatgctttat atggcttgta ctcacgctag caaccctgtt tatgctacgt      1020
     tgaagattag gatatatttt tatgactctg taacgaattg atattataaa gtttgaattt      1080
     tatttctgaa tattgatcta catacatagt ttgttggatt acattataca atacatgttc      1140
     tacagcttta ataactaaat taattgaaat tacaccgaga ttgttcagat atttgaggac      1200
     ttgggttttg aataccctta agaaaagacc agtctgaggc tgtaaggtcg tccagattcg      1260
     gaatgttaga gaacacttgt gcagtcccag agctttccga gtgttgtagt tgaactggat      1320
     cctgatcgtg agtatgtcca tattcgtcgt gaatggacgg ttgacgtggc tgatgatctt      1380
     gaaataaagg ggatttggaa cctcccagat atatgcgcca ttccctgctt gagctgcagt      1440
     gatgggttcc cctgtgcgtg aatccatggt tgtggcagtt gattgacaga taataagaac      1500
     acccgcattc aagatctact ctcctcctcc tgttgcgcct cttcgcttcc ctgtgctgta      1560
     ctttgattgg tacctgagta catgggtcta tcaagtgtga tgaagatcgc attctttaaa      1620
     gcccaatttt ttagtgcaga attcttctct tcatccaaaa actctttata gcttgaattg      1680
     ggccctggat tgcagaggaa gatagtggga attccgcctt taatttgaac tggcttcccg      1740
     tattttgtat ttgattgcca gtccttttgg gcccccatga actccttaag gtgctttagg      1800
     taatgcgggt cgacgtcatc aatgacgtta aaccaggcgt cattactgta tacccttgga      1860
     ctcagatgaa attcaaacca aaaggctaaa gcggccatcc gtttaatatt                 1910
//