ID DQ448618; SV 1; linear; genomic RNA; STD; VRL; 3530 BP. XX AC DQ448618; XX DT 31-DEC-2010 (Rel. 107, Created) DT 31-DEC-2010 (Rel. 107, Last updated, Version 1) XX DE Tobacco rattle virus isolate TRV-PdC36-2 segment RNA-2, complete genome. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3530 RA Duarte I.M.; RT ; RL Submitted (15-MAR-2006) to the INSDC. RL Biologia, Universidade de Minho, Campus de Gualtar, Braga 4710-057, RL Portugal XX DR MD5; 943c9cab9673c137cd6fef28a8f8784c. DR RFAM; RF01101; TLS-PK6. XX FH Key Location/Qualifiers FH FT source 1..3530 FT /organism="Tobacco rattle virus" FT /segment="RNA-2" FT /host="Paratrichodorus divergens" FT /isolate="TRV-PdC36-2" FT /mol_type="genomic RNA" FT /country="Portugal:Mira" FT /isolation_source="whole plant tissue lysate" FT /db_xref="taxon:12295" FT CDS 524..1159 FT /codon_start=1 FT /product="capsid protein" FT /note="coat protein; 22.6 kDa protein" FT /db_xref="GOA:E6Y0L3" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:E6Y0L3" FT /protein_id="ABE27893.1" FT /translation="MAGTYGESFEGKILDELSGAWVEKHNWNDVLKRLTKIKFALQADR FT DMIPGIMEDLITEIPVDEFTRFPAGKVYHSLSKELLMAIEAIHAASSLKRRAEEKNNVN FT PRQRFDSEGSTTQLNPGGTVVRPVTGNNDSALGEDMFSNSKLDDASTSFHKSLAALKGS FT RPKAVVQRTFEREYNLKWTTGAAGAPATGGGTAATGGTPAGGGRGPGP" FT CDS 1284..2000 FT /codon_start=1 FT /product="2b protein" FT /note="putative 27.16 kDa protein" FT /db_xref="GOA:E6Y0L4" FT /db_xref="InterPro:IPR007935" FT /db_xref="UniProtKB/TrEMBL:E6Y0L4" FT /protein_id="ABE27894.1" FT /translation="MVNGDWSDKWPVENLFVDDFGKLVWFDILSDVVGITHFVSQVPTD FT LSKIPKSFISFIDNRVPMCINSRGWMYLRVKVDGKDVYYQKLGELDISSFGDAFLPPDF FT EFKFLKVTVPVDEQLVSKATSLERLNAQLTTDLKQARTLKNFEELREGLVLNYSKTGGR FT LYRMVTRMIGGNWKLVAEINNDSDKWATLSANLVLKPDAQYLGYKVVRRFNVVGLEFDL FT TRLNAMDIPTLLASTV" FT CDS 2175..3041 FT /codon_start=1 FT /product="2c protein" FT /note="putative 32.5 kDa protein" FT /db_xref="GOA:E6Y0L5" FT /db_xref="UniProtKB/TrEMBL:E6Y0L5" FT /protein_id="ABE27895.1" FT /translation="MGDVLSAFILELTSEVTFSVWFDRKNFLTNSGRVFPFNGDIPIVG FT NWLVVYCHWWPDGSTTIHLSTRSHNVDVRKSCTFSVVGHNKRKFQVERDSLMYSTVSNR FT NANFEDGFRIRFPESSPFKVDFVVSFRPNLCRFSNANGSIVVVGPRFEAAVSLESYLDS FT LKGRLRIPRGGPIPFIALVVSIIGVLASISGIVVSALTRFTPIEKVVLVWADSIHRFVV FT YKYKSFDVHSIRTVSVEQVKALLTGPSNATDFFSEYKFDVYSPFFTALVWDNLAKDSIF FT GSTYHLP" XX SQ Sequence 3530 BP; 975 A; 600 C; 834 G; 1121 T; 0 other; tcgcggtaga acgtacttat ccgacacaac ctttatcctc ttccctgaca gagtttttgt 60 cagaacatca gaacggttaa atctatccag cttagtaccg aatgggcgaa agtgtactgg 120 tgtgccaaaa ctggaatgat gttgttgggt ttttacgtag ggtgtgtaga tatcgaaagt 180 agtgtaggta agtgttctca cactttaaac tgagacgtgt ccaatacgac aatttggtca 240 taaaatcaaa agaaagagtt tatgttctaa catacgttaa actctggtta aaaacgaact 300 ttgttcgcat cagtttgttg ttagaaacaa gctgtggctc aagctcatcg cgagtttgtt 360 gataagtgga acttatctaa tccaatataa ctatatattg gtttgcataa tatactgttt 420 gcaattctgt tggattgaag aatgttaggt aaaatactgt caatactttg ataaggagat 480 ttgctgaaac acaggttgct taatcactta ctctccttca ctgatggctg ggacgtacgg 540 ggagtccttc gaagggaaga ttttagatga attatcggga gcttgggttg agaaacacaa 600 ttggaacgat gttcttaaga ggctgactaa gataaagttt gctttacagg ctgatagaga 660 catgattcct ggaattatgg aagatttaat cactgagatt cctgtagatg aatttactag 720 attcccggct ggtaaagttt accattcgtt gtctaaagaa ctgttgatgg caatcgaagc 780 tattcatgcc gcgtcttctc ttaaaaggag ggctgaagaa aagaacaacg ttaatcctag 840 gcaacggttc gactctgaag gatccacgac acaattaaat cccggaggta ctgtcgttag 900 acctgtcact ggcaataacg actcagctct gggtgaggat atgttctcta acagcaagtt 960 agatgacgct agtacctcct ttcacaagag cttggccgct ttgaaaggta gtcgtccaaa 1020 ggctgtggtt caaagaactt ttgaaagaga atataatctg aagtggacga caggagcagc 1080 tggagcacct gctactggag gtgggactgc tgcaacaggt ggaactcctg ctggtggtgg 1140 acggggtcct ggtccatgag tttcttaacg gtgtcaatgg tttatgactg gcttggtcat 1200 tttgtcttat ttactagtgg cgaaagatga gtttaaccac ggtcggtgtt ctttgacttt 1260 tgtcgcagac ggcatatgtg aagatggtta atggagattg gtctgataag tggccggttg 1320 aaaatttgtt tgttgacgat tttggtaagt tggtatggtt tgacattctg agtgatgtag 1380 ttggaatcac tcatttcgtc tctcaagtac cgacagatct ttcgaaaatt cctaaatcat 1440 tcatttcttt cattgacaac cgagttccca tgtgcataaa ctctaggggt tggatgtact 1500 tgagggttaa ggttgacggt aaagatgttt actaccagaa gttgggagag ttagacattt 1560 cttccttcgg agatgcgttc ttaccaccgg attttgaatt taagttcctc aaggttacag 1620 tgcctgttga tgagcaactg gttagtaaag ctacttcttt ggagaggtta aacgcacaac 1680 taacgacaga tctcaagcaa gctcgaaccc ttaagaattt tgaagaactc cgggaaggtt 1740 tggtgttaaa ttattcgaag acaggaggtc ggctctacag aatggtaaca aggatgatag 1800 gtggaaattg gaagttggtt gctgaaatta acaatgattc agataaatgg gctactttaa 1860 gtgctaactt agttcttaaa ccagacgcac agtacctggg ttacaaagtc gtaaggagat 1920 ttaacgtggt cggactcgag tttgatctaa caaggttgaa tgcaatggac attccaactc 1980 tgttagcgtc cactgtgtag tttgagacac ttacgtaggt cgatctcatc gacggtggcc 2040 tagaccatac taggtgaagt tgtaggaagc ttcaaaaata attcctgtag gcaaatctca 2100 tttgcggtgg ttgttaccat aaacaataat gtcgttggtt gcatttaaaa taattccttt 2160 tgtctgttaa cagtatggga gatgtactca gtgctttcat tcttgaatta acttcggagg 2220 ttactttctc cgtgtggttt gataggaaga actttctcac taactctggt cgtgtgtttc 2280 ccttcaatgg tgatattcca atagttggta actggttagt cgtttattgt cattggtggc 2340 ctgacggttc aacgacgata catttatcaa caaggtctca caatgttgac gttagaaaat 2400 cttgtacttt ttcagtagtt ggacataata aacgtaaatt tcaagtggaa agggattcgc 2460 tgatgtatag tactgtctct aacaggaatg cgaatttcga agatggtttt aggatcaggt 2520 ttcctgaatc atctcctttc aaggttgatt ttgtcgtgtc ctttagaccc aatttgtgca 2580 ggttttctaa tgctaacggt tctattgttg tagtcggacc caggtttgaa gcagcggtta 2640 gtttagagag ttatctcgac tcactaaaag gtcgactgag aattcctcgt ggcggaccca 2700 ttccattcat cgcgttggta gtatctataa taggtgtact tgcgtctata tctggaatcg 2760 tcgtgagcgc gttaacacgc ttcacgccga tagagaaagt ggtattggtg tgggcagact 2820 cgattcatag atttgttgtt tacaaataca agagtttcga cgttcactca attagaacgg 2880 tatcggttga acaggtcaaa gcattactaa ccggtccttc aaatgcgacg gacttcttta 2940 gtgagtataa gtttgacgtg tattcccctt tctttactgc tcttgtttgg gataacttgg 3000 cgaaagacag tatttttgga tcaacttatc atttacctta aaactgttgt ggctgtagcc 3060 accttgagaa acgttgtaag cgttttgaga cgagaaatcg agaaatctgg aaagaattct 3120 gacgaaatca agttgaaaac ggtttttctt catctaaaaa gtcatcaaac tcaaaacctt 3180 ctaagaagaa attcaaggaa agaggagagt ttgggacacc aaaaagattt taaagtgata 3240 ttccatttgg aattgattaa tcgtttgctt tttgatttta ttttgtattg ctatctgttt 3300 ctgtgtatag actgtttgag attggcgttt ggccgactca ttgtcttacc ataggggaac 3360 ggactttgtt tgtgttgtta ttttatttgt actttattaa aattctcaat aatctgaaaa 3420 ggctttgttg ccaagaggtt attggggggt gagtaagtac ttttaaagtg atgatggtta 3480 caaaggcaaa aggggtaaaa cccctcgcct acgtaagcgt tattacgccc 3530 //