ID DQ448617; SV 1; linear; genomic RNA; STD; VRL; 3677 BP. XX AC DQ448617; XX DT 31-DEC-2010 (Rel. 107, Created) DT 31-DEC-2010 (Rel. 107, Last updated, Version 1) XX DE Tobacco rattle virus isolate TRV-PallM-3 segment RNA-2, complete genome. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3677 RA Duarte I.M.; RT ; RL Submitted (15-MAR-2006) to the INSDC. RL Biologia, Universidade de Minho, Campus de Gualtar, Braga 4710-057, RL Portugal XX DR MD5; 412b0235cf85369147c37fe89ebb1ae3. DR RFAM; RF01101; TLS-PK6. XX FH Key Location/Qualifiers FH FT source 1..3677 FT /organism="Tobacco rattle virus" FT /segment="RNA-2" FT /host="Paratrichodorus allius" FT /isolate="TRV-PallM-3" FT /mol_type="genomic RNA" FT /country="USA:Mattawa" FT /isolation_source="whole plant tissue lysate" FT /db_xref="taxon:12295" FT CDS 524..1126 FT /codon_start=1 FT /product="capsid protein" FT /note="coat protein; 22.3 kDa protein" FT /db_xref="GOA:Q6YA86" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q6YA86" FT /protein_id="ABE27890.1" FT /translation="MTDGMYDEEFDSKALNETFSPWVEEKNWKDVLMRLSAMKFALQAD FT RDKIPGVLSDLKKDCPFSAFKRFPDKEMWSKLTKEAVIALAQIQAASSFKRRADEKNAV FT SGLITATPAQASTSNANPSGSATTVVRPPRLDDSSFQEDSFSFGKFDDASTAYHKALSY FT LEGLNLKPLYRRQFEKSYNTRWVPAAAPVAPGPRPNP" FT CDS 1239..2204 FT /codon_start=1 FT /product="2b protein" FT /note="putative 37.6 kDa protein" FT /db_xref="UniProtKB/TrEMBL:E6Y0L1" FT /protein_id="ABE27891.1" FT /translation="MEEYRLWSKNPDYFFSDDAKLFLLHGHHDSPYYKSGEYTVSRSVN FT WGDPEFLMVIGMSRLLTFLSERHLCISVDGNCYSRIQEGLYYYGKFDIYSLMVGNSTQW FT DDFIIYRELTRVHIDFRNVLELLQLAGADRGRLFPRLRELLDLEKVVHSTSKLPDKDIT FT LMIQNLKDQLSATTLENDNLKKEIVMLKSRVEAAQAQAQTRHLENDDLKKQIESLKKKT FT ADVGSISEAIVQVPVVLPAKSTPKIKKYPDDYNNEELSAMSKVGDDNDFEHLSPIDKRI FT WGPKDVYHYVKMYYRFPQRNFIDERIVKDKEREDRRASGL" FT CDS 2216..3115 FT /codon_start=1 FT /product="2c protein" FT /note="putative 33.6 kDa protein" FT /db_xref="UniProtKB/TrEMBL:E6Y0L2" FT /protein_id="ABE27892.1" FT /translation="MTSASIWTLRQGDYPKGSMLIRRRVKNSVLTGKGGYADLDGNVAV FT GTGWRWEIDFSDLRKLRFSFDSSDTMFGHLRLTFELFTTVNFKSIASYKHEGYKSSPSN FT KLLLLNKVATNNSYTVTVDEELIRATSFEVVFEWPAPVMASAEMDATLYGFFHSHKAYP FT HMFPITSGFYSSSEQAVRAEEVSVLIKYVPGPLTTGLFSLTGLLXITVDFPVNDDRKVD FT FKGFENSNFRVTGVKALVDENQRVTLTANVNLLAANLPRRCYWLGQIAVMLRKGGVYKR FT IDWTDHLDLVLPSLPSRP" XX SQ Sequence 3677 BP; 1045 A; 652 C; 890 G; 1089 T; 1 other; ataaaacatt gcaccattgg tgttgccccg gccggggtat gtctttgaac acagtagaat 60 gtgctaattg acaagttgga gaacgcggta gaacgtactt atccgacacg gccttttatc 120 cctttgttga gaggtttttc tcagccgcaa tgaaattctg gatttagttg gccgctagaa 180 ggctgaagga atgtagttgt gttttttagt ttagttaata agtgtcttcc aatacacatt 240 aaaccttgga cgtgttagct acgaaagtgt gtaaatttaa aaacaattag tcttccgtga 300 ttaaggatga ttaaggctaa aaacgattgt taatgatttt ggcaatcgca tccattcgct 360 atcacaagcg atggtggcat tgacccggaa aggtctaatc ttgcggtcat tcgactggaa 420 gaagcataat tatactgatt gtgcaacttt gtgttaccat tctgacagtg attcttgctg 480 aactactggt tactgtatca cttgcaatca ctcacgttcc gcgatgacag acggtatgta 540 cgatgaggag tttgatagca aagctctcaa cgaaacattt tcgccatggg ttgaggagaa 600 gaactggaaa gacgttctaa tgaggttgag cgctatgaaa tttgcattac aagctgacag 660 ggacaaaatt cctggggttt tatcagatct gaagaaagac tgtcctttca gtgctttcaa 720 gaggtttcct gacaaagaga tgtggtcgaa attgacgaag gaggctgtca ttgctttagc 780 tcaaattcaa gctgcttctt cttttaagag gagggcagat gaaaagaatg ccgtttctgg 840 gttgattact gcaacacctg ctcaagcttc tactagtaac gcgaacccaa gtggttcagc 900 aaccacagtg gtgagaccac caaggttgga cgactcgtct tttcaagagg atagcttttc 960 ttttggtaaa ttcgatgacg cttctactgc gtatcataaa gctctctcct atttggaagg 1020 tttaaatttg aaaccgttat ataggagaca gtttgagaaa tcgtacaaca ctaggtgggt 1080 tcctgctgcc gctccggtgg cgcctgggcc gcgtccgaat ccctaattct aagtttgtca 1140 gatactcttt tagagggtca cgtgaaaatc gtgaggtggt gtttaccata taacataatg 1200 tcatatgtgg gcatttaaaa taatcacatt gctgcgagat ggaggagtat aggctttggt 1260 caaagaatcc ggattacttc ttttccgacg atgcaaaact gttcttactg catgggcatc 1320 acgatagtcc gtattataag agcggggaat acactgtttc tcgttcggtt aattggggag 1380 atcctgaatt tcttatggta attggaatgt ctagactttt aacttttcta tcagaaagac 1440 atttatgtat cagtgtggac ggaaattgtt attcgcggat ccaagagggt ctgtactact 1500 atggaaagtt tgacatttac tcgttgatgg ttggaaatag tactcagtgg gatgatttca 1560 taatttatag agagctaacg agagttcaca tcgactttcg taacgtgtta gaacttcttc 1620 agctggctgg cgctgataga ggtcgactgt ttcctaggtt gcgagaattg ttagacctcg 1680 aaaaagtcgt tcattcgacg tcaaaactac cggacaaaga tattacgctg atgatacaaa 1740 atctcaaaga tcagttgtct gcgacgactt tagagaacga caatttgaag aaagagatcg 1800 tcatgctgaa gagtcgagtc gaagctgcac aagcgcaagc ccagactaga catctcgaaa 1860 acgacgatct gaagaaacaa atcgagtcgt tgaagaagaa aaccgcagat gtgggaagta 1920 tctctgaagc tattgttcaa gtaccggtgg tgttgcctgc gaagtcgact cctaaaatta 1980 agaagtatcc cgatgattac aacaacgagg aactgagtgc aatgtcaaag gtaggcgatg 2040 ataatgattt cgagcactta tcaccaattg ataaaagaat ttggggccct aaggatgtat 2100 atcattatgt taagatgtat tacagattcc cacagaggaa tttcatagac gaacgcattg 2160 tcaaagacaa ggaaagagaa gacagacgcg caagcggtct gtagaccagc ataaaatgac 2220 gagcgcatcc atctggaccc taagacaggg tgattacccg aagggttcta tgttaattcg 2280 taggagggtt aaaaattctg tcttgactgg aaaaggtggt tacgcggatc tggacggtaa 2340 tgtagcggtc ggaactggat ggcgatggga aatcgacttt agtgacctgc gtaagctgcg 2400 tttttcgttt gattcttcag atactatgtt tggtcattta cggttaactt ttgaactatt 2460 cactacggtg aattttaagt caatagcctc ttataagcac gaaggttaca agtcgtcacc 2520 gtcgaataag ctgttgcttc tcaacaaggt agcgaccaac aatagttata cggtgacggt 2580 agacgaagaa ctcataagag cgacttcttt tgaagttgtc ttcgaatggc ctgcaccagt 2640 gatggcaagt gccgagatgg atgcgactct ttatgggttc ttccattctc acaaggctta 2700 ccctcatatg tttccgataa ctagtggttt ctactccagt tctgagcagg ctgttcgtgc 2760 tgaagaagtg agtgtgctaa ttaaatacgt gccgggacct ttaaccaccg gtttgttctc 2820 gttgactggg ttgttancaa taacagtgga ttttcctgta aacgatgaca gaaaggtaga 2880 ttttaaaggt tttgagaatt ccaattttcg agtcactggc gtaaaagcac tcgttgatga 2940 aaatcaaaga gttactttaa cggccaacgt caatttgtta gcggcaaatc tacctcgacg 3000 ctgttactgg ctagggcaaa ttgctgttat gttaaggaaa ggtggtgtct acaaacgtat 3060 agattggacc gatcacttgg acttagtgct tccttcgcta ccttcaagac cttaagggtt 3120 gacgtaggtg tgcggaaagt aattgtggat ggtttgtctg tattgttatc aatgatttta 3180 cttttgatgt gtataattgt tgtggctgta gccaccttga aaagtgtcgc aaacgcattg 3240 aagcaagaaa gcgggaaatc tggaaacaga ttggccaaat tcgagctgaa aaggcgtctg 3300 ctacagttaa aaagtttcat aaattgaaaa ctcccaagaa gggaggaaga gattttggga 3360 caccaaaaag attttgaaga gatgatgttc catttgggat tgatctattg tttggttttt 3420 gattttattt taaattgtta tctgtttctg tgtatagact gtttgagatt ggcgtttggc 3480 cgactcattg tcttaccata ggggaacgga ctttgtttgt gttgttattt tatttgtatt 3540 ttattaaaat tctcaatgat ctgaaaaggc ctcaaggcta agagattatt ggggggtgag 3600 taagtacttt taaagtgatg atggttacaa aggcaaaagg ggtaaaaccc ctcgcctacg 3660 taagcgttat tacgccc 3677 //