ID DQ448616; SV 1; linear; genomic RNA; STD; VRL; 3218 BP. XX AC DQ448616; XX DT 31-DEC-2010 (Rel. 107, Created) DT 31-DEC-2010 (Rel. 107, Last updated, Version 1) XX DE Tobacco rattle virus isolate TRV-TpC30-12 segment RNA-2, complete genome. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3218 RA Duarte I.M.; RT ; RL Submitted (15-MAR-2006) to the INSDC. RL Biologia, Universidade de Minho, Campus de Gualtar, Braga 4710-057, RL Portugal XX DR MD5; 6cddbf1363aa27af5570ace8e0185a2b. DR RFAM; RF01101; TLS-PK6. XX FH Key Location/Qualifiers FH FT source 1..3218 FT /organism="Tobacco rattle virus" FT /segment="RNA-2" FT /host="Trichodorus primitivus" FT /isolate="TRV-TpC30-12" FT /mol_type="genomic RNA" FT /country="Portugal:Mealhada" FT /isolation_source="whole plant tissue lysate" FT /db_xref="taxon:12295" FT CDS 474..1064 FT /codon_start=1 FT /product="capsid protein" FT /note="coat protein; 21.5 kDa protein" FT /db_xref="GOA:Q9YMD2" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q9YMD2" FT /protein_id="ABE27887.1" FT /translation="MGSYGDSFEGKILDDLSQPWCEKHNWADVLRRLSKIKFALQNDRD FT MIPGILEDLTTELPVDEVTRFPLMKIYYSLSKEVMIAIETIHSASSFKRRAEEKNNVNP FT RQRFEADTATTLVTPGGGAIRPAGSGDSALTEDAFSHGKLDDASTAFHKSLAMLKGERL FT KAYTQRGFEKEYGLKWAGSAPATSSGGGKGPVV" FT CDS 1110..1355 FT /codon_start=1 FT /product="putative 2a protein" FT /db_xref="UniProtKB/TrEMBL:E6Y0K7" FT /protein_id="ABE27888.1" FT /translation="MLGTNDGENVQCVQLGGESARGQYTSNHVDLFEVRVLFPEVRLYS FT ARDRTEKLQFQHSRPIEPFEWCLVGGCICVANVLVF" FT CDS 1387..2160 FT /codon_start=1 FT /product="2b protein" FT /note="putative 29.24 kDa protein" FT /db_xref="GOA:E6Y0K8" FT /db_xref="InterPro:IPR007935" FT /db_xref="UniProtKB/TrEMBL:E6Y0K8" FT /protein_id="ABE27889.1" FT /translation="MTTDWVTLWPNDRLFLSDTYQLVWFDEIRDKVEHKHFSYQASNDL FT LSIPKSFLSFVDNRLPMCINHKGAVYIKVGTGGDAYYQKFGDLDVSKFNDDFLPQDAHF FT VFNNVVIGDNDDVSKTEELASLKKKNEVLQSEVVTSREHSDAIISKLKLDLVQSKMNYF FT VKVEPGLVLGYGKAGGELTRTIVSIVKTNLVVLGERYVRDSHAWKQMGVLHNIKPGSRY FT VAYTFVEESGVMYITYSIGKLRDMSVEELLSSVAF" FT CDS 2336..2803 FT /codon_start=1 FT /product="2c protein" FT /note="putative 18.1 kDa protein" FT /db_xref="UniProtKB/TrEMBL:Q9YMC9" FT /protein_id="ABE27886.1" FT /translation="MISWTLGWFRLYLPQGGDGERTLRISWRGTNVYMFGEQVELPTCW FT DNNSWRGSAYRVIRMNHIDYHVRVFYTWLGAMHHCYVWIYYPAGGGISHYRRRLVVDNR FT NNNYAAGEEFPFNNVNLLTGVVTQGDLLHGVSLNAGTHLYTFTPTLELRWG" XX SQ Sequence 3218 BP; 887 A; 568 C; 798 G; 965 T; 0 other; ataaaacatt gcaccattgg tgttgccctg gctggggtat gtctttgaac acagtagaat 60 gtgctaattg acaagttgga gaacgcggta gaacgtactt atccgacaca gcttttatcc 120 ctcttcacga cgaggttttt gtcgatgtat ttttagttta gctagatcag taaataaact 180 cttgtcttct catacaagga aaacctgaga cgtgttaact acgaaagtgt ctattttaaa 240 actgtgggaa cgctaatcgg cggttctgtg gaatccaaaa acgccaaagt cttcatgatt 300 ttgtgtgcaa gagtgtgtat aaagctctgg tttgaaaatt gaacttgtcc ttcttacgat 360 caaaaccatg tcaagaattg tcgtatatga gttgaacaag tgttcaacta cagcatatta 420 ataatcttta cactgtctac agtgcaacct caggtagctg cattcattgt cagatgggtt 480 cgtacggtga ttcttttgaa gggaaaatct tggatgattt gtctcaacca tggtgtgaga 540 agcacaattg ggccgatgtc ttgagaagac tgtcgaagat caagtttgct ttgcaaaatg 600 atcgcgacat gattccaggg attttggaag atctgactac cgaacttccc gttgatgaag 660 ttacgcgatt tcctttgatg aaaatttatt actcactttc gaaagaagtc atgattgcta 720 ttgaaacaat tcactctgct tcgtcgttta aaaggcgtgc tgaagaaaag aacaatgtga 780 atccccgtca aagattcgaa gctgatactg cgaccactct cgtgactccg ggtggtgggg 840 ctattcgtcc tgctggttcc ggtgattcgg ctttgactga agatgcattt tcacatggta 900 aacttgatga cgcaagtacg gcttttcaca agtctctagc gatgttgaaa ggtgaaagat 960 tgaaggcgta tacacaacgt ggttttgaga aggagtatgg actgaagtgg gcaggaagtg 1020 ctccggcgac ctcctctgga gggggtaagg gaccggtcgt gtgactcatt gcgaagccat 1080 cgaggaaggt tctcagagcg atcggaagta tgttaggtac taacgatggt gagaacgttc 1140 aatgtgtaca actcggtggt gagagtgcga gaggacagta cacttctaat catgttgatt 1200 tgtttgaagt gagagtgctt tttccggaag tacggcttta ttcggctcgt gataggacgg 1260 agaagttaca atttcaacat tccagaccca ttgaaccgtt cgagtggtgt ttagttggtg 1320 gatgcatttg tgtagccaat gtgttagtct tttgaaacat aaccgtcagg ttttgttcag 1380 catataatga ctacagattg ggttacattg tggccaaacg accgactgtt tctttccgat 1440 acctatcagt tagtctggtt cgatgagata cgtgacaagg tggaacacaa gcatttttcg 1500 taccaggctt ctaatgattt gctgagcata ccaaaatctt ttctaagttt tgttgataac 1560 agattaccta tgtgtataaa tcacaagggt gctgtataca tcaaagttgg aactggtggc 1620 gacgcttatt atcaaaagtt cggtgatctg gacgtgagta aattcaacga cgactttcta 1680 cctcaggacg ctcactttgt gtttaacaac gttgttattg gagacaatga tgatgttagc 1740 aaaactgaag agttagcctc ccttaagaag aaaaacgaag ttctacaaag tgaagttgtt 1800 acgagtagag agcactccga cgcgattatc agtaaactga aattagacct agtccaatct 1860 aagatgaatt atttcgtcaa agttgagccg ggtctggttc tcggttacgg taaagctggc 1920 ggagagttaa ctcggacaat cgtgtccatt gttaaaacaa acctggtcgt tctaggggag 1980 aggtacgtta gagactctca cgcttggaaa cagatgggag tgttgcacaa cattaagcct 2040 ggaagtaggt acgtggcgta cactttcgta gaagaaagtg gggttatgta cattacttat 2100 tcgatcggaa aactgagaga catgagtgtt gaggaacttc ttagttccgt ggcattttag 2160 tctcgtttag tactgtgggt tgatcacatc aacggtggct tgcaccatag caagtacagt 2220 tgtgggaggc tgtgtaaata attcctgtat cttgatctca tcaagggtgg ttgttaccat 2280 aaacaataat gttgtaggaa gcatttaaaa taattcctgg cttatcgaaa tcacgatgat 2340 atcctggaca ttaggatggt ttaggctgta cttaccacaa ggaggtgacg gagagaggac 2400 tttgaggatc agctggcgtg gaaccaacgt atacatgttt ggtgaacagg ttgaactacc 2460 tacgtgttgg gacaacaact cgtggcgagg atctgcgtat cgcgttatta ggatgaatca 2520 tatagactat cacgtccgtg tcttctacac ctggcttgga gcgatgcacc actgttacgt 2580 ctggatatat tatccagcag gcggtggaat ctcccattac cgtcgccggt tagtagttga 2640 taaccgcaac aataattatg cggctggtga agaatttcca ttcaataatg tgaatctgtt 2700 gaccggtgtg gttacgcaag gtgatttgtt acatggagtt agtctcaacg ctggcactca 2760 tctttacaca tttacaccta cacttgaact gcgctggggt taaggtcgta gttttaaaaa 2820 taagttgctg agatcgaaac cttctaagaa gaaattcgaa gggggtagaa aaagtctcgt 2880 cactcgaaag agtacgggac accaaaaaga ttttgagaga tgatgttcca tttggaattg 2940 atcaattgtt tgctttttga ttttgtattg tattgttatt cattcctgtg tatagactgt 3000 ttaagattgg catttggccg acttattgtc ttaccatagg ggagtggact ttgtttgtgt 3060 tgttatttta tttgtatttt attaaaattc tcaatgatct gaaaaggcct cgaggctaag 3120 agattattgg ggggtgagta agtactttta aagtgatgat ggttacaaag gcaaaagggg 3180 taaaacccct cgcctacgta agcgttatta cgcccggg 3218 //