Dbfetch
ID DQ448615; SV 1; linear; genomic RNA; STD; VRL; 3539 BP. XX AC DQ448615; XX DT 31-DEC-2010 (Rel. 107, Created) DT 31-DEC-2010 (Rel. 107, Last updated, Version 1) XX DE Tobacco rattle virus isolate TRV-PmF-12 segment RNA-2, complete genome. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3539 RA Duarte I.M.; RT ; RL Submitted (15-MAR-2006) to the INSDC. RL Biologia, Universidade de Minho, Campus de Gualtar, Braga 4710-057, RL Portugal XX DR MD5; 35b63d6e369aa104f9d74d2bab7eedfb. DR RFAM; RF01101; TLS-PK6. XX FH Key Location/Qualifiers FH FT source 1..3539 FT /organism="Tobacco rattle virus" FT /segment="RNA-2" FT /host="Paratrichodorus minor" FT /isolate="TRV-PmF-12" FT /mol_type="genomic RNA" FT /country="USA:Florida" FT /isolation_source="whole plant tissue lysate" FT /db_xref="taxon:12295" FT CDS 524..1126 FT /codon_start=1 FT /product="capsid protein" FT /note="coat protein; 22.3 kDa protein" FT /db_xref="GOA:E6Y0K3" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:E6Y0K3" FT /protein_id="ABE27883.1" FT /translation="MADGMYDEEFDSKALNETFSPWVEEKNWKDVLMRLSAMKFALQAD FT RDKIPGVLSDLKKDCPFSAFKRFPDKEMWSKLTKEAVIALAQIQAASSFKRRADEKNAV FT SGLITATPAQASTSNVNPSGSATTVVRPPRLDDSSFQEDNFSFGKFDDASTAYHKALSY FT LEGLNLKPLYRRQFEKSYNTRWVPAAAPVAPGPRPNP" FT CDS 1239..2204 FT /codon_start=1 FT /product="2b protein" FT /note="putative 37.6 kDa protein" FT /db_xref="UniProtKB/TrEMBL:E6Y0K4" FT /protein_id="ABE27884.1" FT /translation="MEEYRLWSKNPDYFFSDNAKLFSLHGHHDSPYYKSGEYTVFRSVN FT WGDPELLMVIGMSRLLTFLSERHLCINVDGNCYSRIQEGLCYYGKFDIYSLMVGNSTQW FT DDFIIYRELMRVHIDFRNVLELLQLAGADRGRLFPRLRELLDLEKVVHSTSKLPDKDIT FT LMIQNLKDQLSATTLENDNLKKEIVMLKSRVEAAQAQAQTRHLENDDLKKQIESLKKKT FT ADVGSISEAIVQVPVVLPAKPTPKEKKYPDDYNNEELSAMSKVSDDNDFEHLSPIDKRI FT WGPKDVYHYVKMYYRFPQRNFIDERIVKDKEREDRRASGL" FT CDS 2216..3115 FT /codon_start=1 FT /product="2c protein" FT /note="putative 33.7 kDa protein" FT /db_xref="UniProtKB/TrEMBL:E6Y0K5" FT /protein_id="ABE27885.1" FT /translation="MTSASIWTLRQGDYPKGSMLIRRRVKNSVLTGKGGYVDLDGNVAV FT GTGWRWEIDFSDLRKLRFSFDSSDTMFGHLRLTFELFTTVNFKSIASYKHEGYKSSPSN FT KLLLLNKVATNNSYTVTVDEELIRATSFEVVFEWPAPVMASAEMDATLYGFFHSHKAYP FT HMFPITSGFYSSSEQAVRAEEVSVLIRYVPGPLTTGLLPLTGLLTITVDFPVNDDRKVD FT FKGFENSNFRVTGIKALVDENQRVTLTANVNLLAANLPRRCYWLGQIAVMLRKGGVYKR FT IDWTDHLDLVLPSLPSRP" XX SQ Sequence 3539 BP; 1001 A; 635 C; 858 G; 1045 T; 0 other; ataaaacatt gcaccattgg tgctgccctg gccggggtgt gtctttgaac gcagtagaat 60 gtgctaattg acaagttgga gaacgcggta gaacgtactt atccgacacg gccttttacc 120 cctttgttga gaggtttttc tcagccgcaa tgaaattctg gatttagttg gccgctagaa 180 ggctgaagga atgtagttgt gtttttagtt tagttaataa gtgtcttcca atacacatta 240 aaccttggac gtgttagcta cgaaagtgtg taaattttaa aaacaattag tcttccgtga 300 ttaaggatga ttaaggctaa aaacgattgt taatgatttt ggcaatcgca tccattcgct 360 atcacaagcg atggtggcat tgacccggaa aggtctaatc ttgcggtcat tcgactggaa 420 gaagcataat tatactgatt gtgcaacttt gtgttactat tctgacagtg attcttgctg 480 aactactggt tactgtatca cttgcgatca ctcacgttcc gctatggcag acggtatgta 540 cgatgaggag tttgatagca aggctctcaa cgaaacgttt tcgccatggg ttgaggagaa 600 gaactggaaa gacgttctaa tgaggttgag cgctatgaaa tttgcgttac aagctgacag 660 ggacaaaatt cctggggttt tatcagatct gaagaaagac tgtcctttca gtgcttttaa 720 gaggtttcct gataaagaga tgtggtcgaa attgacgaag gaggctgtca ttgctttagc 780 tcaaattcaa gctgcttctt cttttaagag gagggcagat gaaaagaatg ccgtttctgg 840 gttgattact gcaacacccg ctcaagcttc taccagtaac gtgaacccaa gtggttcagc 900 aaccacagtg gtgagaccac caaggttgga cgactcgtct tttcaagagg ataacttttc 960 ttttggtaaa ttcgatgacg cttctactgc gtatcataaa gctctctcct atttggaagg 1020 tttaaatttg aaaccgttat ataggagaca gtttgagaaa tcgtacaaca ctaggtgggt 1080 tcctgctgcc gctccggtgg cacctgggcc gcgtccgaac ccctaattct aagtttgtca 1140 gatactcttt cagagggtca cgtgaaaatc gtgaggtggt gtttaccata taacataatg 1200 tcatatgtgg gcatttaaaa taatcacatt gctgcgagat ggaggagtat aggctttggt 1260 caaaaaatcc ggattacttc ttttccgaca atgcaaaact gttctcactg catgggcatc 1320 acgatagtcc gtattataag agcggggaat acactgtttt ccgttcggtt aattggggag 1380 atcctgaact tcttatggta attggaatgt ctagactttt aactttccta tcagaaagac 1440 atttatgtat caatgtggac gggaattgtt attcgcggat ccaagagggt ctgtgttact 1500 atggaaagtt tgacatttac tcgttaatgg ttggaaatag tactcagtgg gatgatttca 1560 taatttatag agagctaatg agagttcaca tcgactttcg taacgtgtta gaacttcttc 1620 agctggctgg cgctgataga ggtcgactgt ttcctaggtt gcgagaattg ttagacctcg 1680 aaaaggtcgt tcattcgacg tcaaaactac cggacaaaga tattacgctg atgatacaaa 1740 atctcaaaga tcagttgtct gcgacgactt tagagaacga caatttgaag aaagagatcg 1800 tcatgctgaa gagtcgggtc gaagctgcac aagcgcaagc tcagactaga catctcgaaa 1860 acgacgatct gaagaaacaa atcgagtcgt tgaagaagaa aaccgcagat gtgggaagta 1920 tctctgaagc tattgttcaa gtaccggtgg tgttgcctgc gaagccgact cctaaagaga 1980 agaagtatcc cgatgattac aacaacgagg aactgagtgc aatgtcaaag gtaagcgatg 2040 ataatgattt cgagcattta tcaccaattg acaaaagaat ttggggccct aaggatgtat 2100 atcattatgt taagatgtat tacagattcc cacaaaggaa tttcatagac gaacgcattg 2160 tcaaagacaa ggaaagagaa gacagacgcg caagcggtct gtagaccagc ataaaatgac 2220 gagcgcatcc atctggaccc taagacaggg tgattacccg aagggttcta tgttaattcg 2280 taggagggtt aaaaattctg tcttgactgg gaaaggtggt tacgtggatc tggacggtaa 2340 tgtagcggtc ggaactggat ggcgatggga aatcgacttt agtgacctgc gtaagctgcg 2400 attttcgttt gattcttcag atactatgtt tggtcattta cggttaactt ttgaactatt 2460 cactacggtg aattttaagt caatagcctc ttataagcat gaaggttaca agtcgtcacc 2520 gtcgaataag ctgttgcttc tcaacaaggt ggcgaccaac aatagttata cggtgacggt 2580 ggacgaagaa ctcataagag cgacttcttt tgaagttgtc ttcgaatggc ctgcaccagt 2640 gatggcaagt gccgagatgg atgcgactct ttatgggttc ttccattctc acaaggctta 2700 ccctcatatg tttccgataa ctagtggttt ctactccagt tctgagcaag ctgttcgtgc 2760 tgaagaagtg agtgtgctaa ttagatacgt gccgggacct ttaaccaccg gtttgctccc 2820 gttgactggg ttgttaacaa taacagtgga ttttcctgta aacgatgaca gaaaggtaga 2880 ttttaaaggt tttgagaatt ccaattttcg agtcactggc ataaaagcac tcgttgatga 2940 aaatcaaaga gttactttaa cggccaacgt caatttgtta gcggcaaatc tacctcgacg 3000 ctgttactgg ctagggcaaa ttgctgttat gttaaggaaa ggtggtgtct acaaacgtat 3060 agattggacc gatcacttgg acttggtgct cccttcgcta ccttcaagac cttaagggtt 3120 gacgtaggtg tgcggaaagt gattgtggat gtactacggt ttaaaagtct cgaaattcga 3180 aaccctctaa gaagaaattc aaagagagaa aagattttgg gacaccaaaa agattttaaa 3240 gagatgatgt tcctttcgga attgattaat tgtttgcttt ttgattttat tttaagttgt 3300 tatctgtttc tgtgtataga ctgtttgaga ttggtgtttg gccgactcat tgtcttacca 3360 taggggaacg gactttgttt gtgtcgttat tttatttgta ttttattaaa attctcaata 3420 atctgaaaag gctttgttgc taagagattg ttggggggtg agtaagtact tttaaagtga 3480 tgatggttac aaaggcaaaa ggggtaaaac ccctcgccta cgtaagcgtt attacgccc 3539 //