ID DQ448614; SV 1; linear; genomic RNA; STD; VRL; 3822 BP. XX AC DQ448614; XX DT 31-DEC-2010 (Rel. 107, Created) DT 31-DEC-2010 (Rel. 107, Last updated, Version 1) XX DE Tobacco rattle virus isolate TRV-PmC9-2 segment RNA-2, complete genome. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3822 RA Duarte I.M.; RT ; RL Submitted (15-MAR-2006) to the INSDC. RL Biologia, Universidade de Minho, Campus de Gualtar, Braga 4710-057, RL Portugal XX DR MD5; f8bb756b16dc4922fde20d298a9c795d. DR RFAM; RF01101; TLS-PK6. XX CC Name: PmC9-2. XX FH Key Location/Qualifiers FH FT source 1..3822 FT /organism="Tobacco rattle virus" FT /segment="RNA-2" FT /host="Paratrichodorus minor" FT /isolate="TRV-PmC9-2" FT /mol_type="genomic RNA" FT /country="Portugal:Oliveira do Bairro" FT /isolation_source="whole plant tissue lysate" FT /db_xref="taxon:12295" FT CDS 495..1136 FT /codon_start=1 FT /product="capsid protein" FT /note="coat protein; 23 kDa protein" FT /db_xref="GOA:E6Y0J7" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:E6Y0J7" FT /protein_id="ABE27880.1" FT /translation="MTDGMYDENFDTKALDDSFGAWVEVDNWKDVTTRLRSMKFALQAD FT RDKIPGILSELRIACPYSAFKRFPDKQVYSKLSKEAIVAVAQVQAASSFKRRADEKNAV FT SGLVTANVQQASASGTVPAGSATIVRPPRENDSAFQEDNFSFGKFDDAATAFHKALAYL FT EGLSMVPMYRRYFEKKYDTKWVAAPSAAAPSVGGTGAPAPGGGGVVRPNA" FT CDS 1224..2390 FT /codon_start=1 FT /product="2b protein" FT /note="putative 43.98 kDa protein" FT /db_xref="UniProtKB/TrEMBL:E6Y0K1" FT /protein_id="ABE27881.1" FT /translation="MSQVAFKIIPFFKMHPLISVWASDTNVLLLDNGEVVRVGVRSPHV FT VDFEVLGRLETFSAELGEGFPVGRSGSFELIFKFMTQRFLCVNRDGHCYTRHVGGLYYY FT GKADLGQVFLNNYVVENRAPVWERVFERRELFVLHDLVEEIAATMSLSSRSYELIQEFR FT KSTMKLLININRLRAGVGFPEVIDWKVSVDGMSAVADEVKKRIGNSPLRQITLPDSMYR FT KLSRLSGSSQVDWTPELATSKILEILEEIPLRPSDNVVVGLMSAGVFLFSDYVPRLNES FT SVVFRDTMNVYSGTWASLIDGFVSDRESTDTPALANSLTASSPSSEKFFVVGYTKHNGL FT IVYIALSDYSEVEWARYRFRWVVLLDRPVYAKPTALRRGNAVIGWLRK" FT CDS 2497..3393 FT /codon_start=1 FT /product="2c protein" FT /note="putative 33.5 kDa protein" FT /db_xref="UniProtKB/TrEMBL:E6Y0K2" FT /protein_id="ABE27882.1" FT /translation="MTSASVVVLKSKELVPGVLPTYEDRGIINSLTLRNRTFNLSKPFV FT EADGAITTSVMWSFEIDKLSADTAVFELNFGGTVLGHIRLEFLFETSVKPTVIGSFNHS FT GFSNTTKEILIVNDSTVGKFRRFWVDQEIIRGDNFRIAFKWPNLVRDGNSGEYNIVGLF FT HSHKARPHTWPLISGLFTPTTVSKVFKKEKIKFEYQTTISGDASSASEKRPFHLTIVVA FT SSTDLEELVVDFDIFDSPGWSHSVSSESTKQSKKVTFVLTSVLPRGKRCYWLGNFSIIV FT KDGKSYHRVLFDDLVIN" XX SQ Sequence 3822 BP; 1022 A; 665 C; 947 G; 1188 T; 0 other; cgcggtagaa cgtacttatc caacacaatc tttatcccct tccctgacag ggtttttgtc 60 agaatatcat cttcaggttt aatctatcca gcttagtacc gagtggggga aagtgactgg 120 tgtgcctaag acctctttga gatgatgttt gcgggtttta ctggttccga gtgtcttcta 180 atacacttta aaccttagac gtatcgctta cgacagtagc acttataaaa accaaggctt 240 gaggactaga gaacttaagg cttgtcgata aacgccgatt taattgagcg caggtagacg 300 aactagttag ctctactggg gtttcacact atctttagag aaagtgttaa tcatgtgagt 360 aagaatttct tacttacgag cataattata ctgattgtgt tctcgctgat acagagtatc 420 aaacttgtta ctagaattcg gacagtgagt cttgtcgata cacaggttgc tttaacactt 480 gcgctcacta ctaaatgact gacgggatgt acgatgagaa cttcgatact aaagcgctgg 540 acgattcttt cggtgcttgg gttgaagtcg acaattggaa agacgttacg actaggttga 600 ggtcgatgaa gtttgcattg caggccgata gagacaagat tcctggtatt ctatctgagt 660 tgagaatcgc ttgcccttac tctgctttca aacgttttcc agacaagcaa gtttacagca 720 agttaagtaa ggaagcaatt gttgcggttg ctcaggttca agcagcttcc tccttcaaga 780 ggagagcgga tgagaagaac gctgtgtctg gcttggtgac tgccaacgtt cagcaggctt 840 cagctagtgg aacagttccc gcgggaagtg ctacaatagt aaggcctcca cgagagaatg 900 actcggcttt tcaagaagat aacttttctt tcgggaagtt tgatgacgct gctacagcct 960 tccataaggc tttggcttac ttagaagggc tgagcatggt tcccatgtac aggaggtact 1020 ttgaaaagaa gtatgatact aaatgggtcg cagcaccatc ggccgcagca ccatcggtcg 1080 gaggtacagg tgctcccgct ccaggtggtg ggggagtcgt gcgtccaaac gcttgagtct 1140 gacttcatta gcggtgactt gaaaaacacc ttttaaaaag gggttccgtg aaaatcggaa 1200 ggtggatgtt accataaaca ttaatgtcgc aggtggcgtt taaaataata cctttcttca 1260 agatgcatcc tttgatttca gtttgggcca gtgatactaa cgtactattg ttggacaatg 1320 gtgaggtggt tagagttgga gtgaggtcgc ctcatgtcgt cgatttcgaa gtacttggaa 1380 ggttggagac gttttctgcc gaacttgggg aagggtttcc cgttggtagg agtggttcgt 1440 ttgaactaat tttcaagttt atgactcaac gtttcctatg tgttaataga gatggacatt 1500 gctacactag acatgttgga gggttatact attatggtaa ggctgatctc ggtcaagtct 1560 ttttgaataa ttacgtggtc gaaaacagag ctcccgtttg ggagagggtt tttgaaagac 1620 gtgagttgtt tgtccttcat gatcttgtcg aagagatcgc tgctactatg agtctgagta 1680 gtcgttctta cgagttgata caagagtttc gaaaatccac gatgaaactt ttgattaata 1740 ttaacaggct aagagcgggt gttggattcc cagaagtgat agattggaaa gtttcagtag 1800 atggaatgag tgctgtggca gacgaagtaa aaaagagaat tggtaactct ccacttcggc 1860 agatcacttt gccggattcc atgtacagga aactttctcg tttaagcggt tcgagtcaag 1920 ttgattggac acctgaacta gcgacttcaa aaattctaga aattctcgag gaaattccct 1980 taagaccatc tgataacgtg gttgtcggtt tgatgtctgc aggggtgttt ctgttttcag 2040 actacgtgcc tcgacttaat gagagttctg ttgtctttag ggacactatg aatgtatact 2100 ctggaacgtg ggctagtctt atagacggat ttgtgtcgga cagggaaagt actgatactc 2160 ctgctctggc gaattccttg actgcaagca gtccctccag tgaaaagttt tttgtcgtag 2220 gttatacaaa acataatgga ctgatcgttt atatagcttt gtctgattac tcggaagttg 2280 aatgggctag gtacagattt cgatgggttg ttctactgga tcgacctgtg tatgcgaaac 2340 caacagcttt gagacgaggg aatgcagtta tagggtggtt acgtaagtga ctcttcctgt 2400 tactggagtt gacgcgtggg tattcaagtg gaacacaagg atgtgtttgt agcaagaagg 2460 agttctgaaa cttcttttca ccatgcattg tttgagatga ctagtgcgtc tgtggttgtg 2520 ttgaagtcaa aggaacttgt cccaggagtg ctcccaacgt atgaagacag agggataatt 2580 aactctctta cgctgcggaa tcgaactttt aacttaagca aaccttttgt ggaagcagat 2640 ggagcaataa ccacatctgt gatgtggtca tttgagattg ataaattatc tgccgatact 2700 gctgtttttg aactgaattt cgggggaacc gtgttgggtc atattagatt ggagttttta 2760 tttgaaacaa gtgtaaaacc taccgtaatt ggtagtttta atcattctgg gttttcaaat 2820 accactaaag aaatcttaat agttaatgac tcgactgtgg ggaagtttag gagattctgg 2880 gttgatcaag agattattcg gggagataac tttcgaattg ctttcaagtg gccaaatttg 2940 gtcagggacg gcaacagtgg agagtacaac atagtggggc ttttccatag tcacaaagcc 3000 agaccacata cgtggccctt gattagtggt ctattcacac ccactacagt ctcaaaagtt 3060 ttcaagaaag agaaaatcaa atttgagtac cagactacta tatctggaga tgcttcttcg 3120 gcatctgaga agcgaccttt tcatctgacg attgtcgtcg cttcttcaac tgatttggaa 3180 gagttggtgg tcgattttga tatcttcgat tctcctggat ggtctcatag cgtgagcagt 3240 gagtctacta aacagagcaa gaaagtcacg tttgtactta cttctgtgtt acctcgaggg 3300 aaaagatgtt attggttggg aaacttttcg attatagtga aggatggtaa gagttaccac 3360 cgtgtccttt tcgatgattt ggtcattaat tagtggaaag gtactttgct tacgtttctg 3420 ttactaacat atttgttttg ctttcaaaag tcatcaaatt cagaactttc taagaagaaa 3480 tttaaagaag gaaaagagtt tgggacacca aaaagatttt aaagagatga tgttccgttt 3540 ggaattgatt aattctttac cttttgtttt tattttatat tgttatctgt ttctgtgtat 3600 agactgtttg agattggcgt ttggccgact cattgtctta ccatagggga acggactttg 3660 tttgtgttgt tattttattt gtattttatt aaaattctca atgatctgaa aaggctttgt 3720 tgccaagaga ttattggggg gtgagtaagt acttttaaag tgatgatggt tacaaaggca 3780 aaaggggtaa aacccctcgc ctacgtaagc gttattacgc cc 3822 //