ID DQ448613; SV 1; linear; genomic RNA; STD; VRL; 3905 BP. XX AC DQ448613; XX DT 31-DEC-2010 (Rel. 107, Created) DT 31-DEC-2010 (Rel. 107, Last updated, Version 1) XX DE Tobacco rattle virus isolate TRV-PhB1-28 segment RNA-2, complete genome. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3905 RA Duarte I.M.; RT ; RL Submitted (15-MAR-2006) to the INSDC. RL Biologia, Universidade de Minho, Campus de Gualtar, Braga 4710-057, RL Portugal XX DR MD5; fa75fd85d66b59d5e5328277550d1213. DR RFAM; RF01101; TLS-PK6. XX FH Key Location/Qualifiers FH FT source 1..3905 FT /organism="Tobacco rattle virus" FT /segment="RNA-2" FT /host="Paratrichodorus hispanus" FT /isolate="TRV-PhB1-28" FT /mol_type="genomic RNA" FT /country="Portugal:Braga" FT /isolation_source="whole plant tissue lysate" FT /db_xref="taxon:12295" FT CDS 578..1219 FT /codon_start=1 FT /product="capsid protein" FT /note="coat protein; 23 kDa protein" FT /db_xref="GOA:E6Y0J7" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:E6Y0J7" FT /protein_id="ABE27877.1" FT /translation="MTDGMYDENFDTKALDDSFGAWVEVDNWKDVTTRLRSMKFALQAD FT RDKIPGILSELRIACPYSAFKRFPDKQVYSKLSKEAIVAVAQVQAASSFKRRADEKNAV FT SGLVTANVQQASASGTVPAGSATIVRPPRENDSAFQEDNFSFGKFDDAATAFHKALAYL FT EGLSMVPMYRRYFEKKYDTKWVAAPSAAAPSVGGTGAPAPGGGGVVRPNA" FT CDS 1307..2473 FT /codon_start=1 FT /product="2b protein" FT /note="putative 43.95 kDa protein" FT /db_xref="UniProtKB/TrEMBL:E6Y0J8" FT /protein_id="ABE27878.1" FT /translation="MSQVAFKIIPFFKMHPLISVWASDTNVLLLDNGEVVRVGVRSPHV FT VDFEVLGRLETFSAELGEGFPVGRSGSFELIFKFMTQRFLCVNRDGHCYTRHVGGLYYY FT GKADLGQVFLNNYVVENRAPVWERVFERRELFVLHDLVEEIAATMSLSSRSYELIQEFR FT KSTMKLLININRLRAGVGFPEVIDWKVSVDGMSAVADEVKKRIGNSPLQQITLPDSMYR FT KLSRLSGSSQVDWTPELATSKILEILEEIPLRPSDNVVVGLMSAGVFLFSDYVPRLNES FT SVVFRDTMNVYSGTWASLIDGFVSDRESTDTPALANSLTASSPSSEKFFVVGYTKHNGL FT IVYIALSDYSEVEWARYRFRWVVLLDRPVYAKPTALRRGNAVIGWLRK" FT CDS 2580..3476 FT /codon_start=1 FT /product="2c protein" FT /note="putative 33.5 kDa protein" FT /db_xref="UniProtKB/TrEMBL:E6Y0J9" FT /protein_id="ABE27879.1" FT /translation="MTSASVVVLKSKELVPGVFPTYEDRGIINSLTLRNRTFNLSKPFV FT EADGAITTSVMWSFEIDKLSADTAVFELNFGGTVLGHIRLEFLFETSVKPTVIGSFNHS FT GFSNTTKEILIVNDSTVGKFRRFWVDQEIIRGDNFRIAFKWPNLVRDGNSGEYNIVGLF FT HSHKARPHTWPLISGLFTPTTVSKVFKKEKIKFEYQTTISGDASSASEKRPFHLTIVVA FT SSTDLEELVVDFDIFDSPGWSHSVSSESTKQSKKVTFVLTSVLPREKRCYWLGNXSIIV FT KDGKSYHRVLFDDLVIN" XX SQ Sequence 3905 BP; 1050 A; 676 C; 967 G; 1211 T; 1 other; ataaaacatt gcacctttgg tgatgccctg attggggtgc gtcagtgaac tcagtagaat 60 gagctaattg acaagttgga gaacgcggta gaacgtactt atccaacaca atctttatcc 120 ccttccctga cagggttttt gtcagaatat catcttcagg tttaatctat ccagcttagt 180 accgagtggg ggaaagtgac tggtgtgcct aagacctctt tgagatgatg tttgcgggtt 240 ttactggttc cgagtgtctt ctaatacact ttaaacctta gacgtatcgc ttacgacagt 300 agcacttata aaaaccaagg cttgaggact agagaactta aggcttgtcg ataaacgccg 360 atttaattga gcgcaggtag acgaactagt tagctctact ggggtttcac actatcttta 420 gagaaagtgt taatcatgtg agtaagaatt tcttacttac gagcataatt atactgattg 480 tgttctcgct gatacagagt atcaaacttg ttactagaat tcggacagtg agtcttgtcg 540 atacacaggt tgctttaaca cttgcgctca ctactaaatg actgacggga tgtacgatga 600 gaacttcgat actaaagcgc tggacgattc tttcggtgct tgggttgaag tcgacaattg 660 gaaagacgtt acgactaggt tgaggtcgat gaagtttgca ttgcaggccg atagagacaa 720 gattcctggt attctatctg agttgagaat cgcttgccct tactctgctt tcaaacgttt 780 tccagacaag caagtttaca gcaagttaag taaggaagca attgttgcgg ttgctcaggt 840 tcaagcagct tcctccttca agaggagagc ggatgagaag aacgctgtgt ctggcttggt 900 gactgccaac gttcagcagg cttcagctag tggaacagtt cccgcgggaa gtgctacaat 960 agtaaggcct ccacgagaga atgactcggc ttttcaagaa gataactttt ctttcgggaa 1020 gtttgatgac gctgctacag ccttccataa ggctttggct tacttagaag ggctgagcat 1080 ggttcccatg tacaggaggt actttgaaaa gaagtatgat actaaatggg tcgcagcacc 1140 atcggccgca gcaccatcgg tcggaggtac aggtgctccc gctccaggtg gtgggggagt 1200 cgtgcgtcca aacgcttgag tctgacttca ttagcggtga cttgaaaaac accttttaaa 1260 aaggggttcc gtgaaaatcg gaaggtggat gttaccataa acattaatgt cgcaggtggc 1320 atttaaaata atacctttct tcaagatgca tcctttgatt tcagtttggg ccagtgatac 1380 taacgtacta ttgttggaca atggtgaggt ggttagagtt ggagtgaggt cgcctcatgt 1440 cgtcgatttc gaagtacttg gaaggttgga gacgttttct gccgaacttg gggaagggtt 1500 tcccgttggt aggagtggtt cgtttgaact aattttcaag tttatgactc aacgtttcct 1560 atgtgttaat agagatggac attgctacac tagacatgtt ggagggttat actattatgg 1620 taaggctgat ctcggtcaag tctttttgaa taattacgtg gtcgaaaaca gagctcccgt 1680 ttgggagagg gtttttgaaa gacgtgagtt gtttgtcctt catgatcttg tcgaagagat 1740 cgctgctact atgagtctga gtagtcgttc ttacgagttg atacaagagt ttcgaaaatc 1800 cacgatgaaa cttttgatta atattaacag gctaagagcg ggtgttggat tcccagaagt 1860 gatagattgg aaagtttcag tagatggaat gagtgctgtg gcagacgaag taaaaaagag 1920 aattggtaac tctccacttc agcagatcac tttgccggat tccatgtaca ggaaactttc 1980 tcgtttaagc ggttcgagtc aagttgattg gacacctgaa ctagcgactt caaaaattct 2040 agaaattctc gaggaaattc ccttaagacc atctgataac gtggttgtcg gtttgatgtc 2100 tgcaggggtg tttctgtttt cagactacgt gcctcgactt aatgagagtt ctgttgtctt 2160 tagggacact atgaatgtat actctggaac gtgggctagt cttatagacg gatttgtgtc 2220 ggacagggaa agtactgata ctcctgctct ggcgaattcc ttgactgcaa gcagtccctc 2280 cagtgaaaag ttttttgtcg taggttatac aaaacataat ggactgatcg tttatatagc 2340 tttgtctgat tactcggaag ttgaatgggc taggtacaga tttcgatggg ttgttctact 2400 ggatcgacct gtgtatgcga aaccaacagc tttgagacga gggaatgcag ttatagggtg 2460 gttacgtaag tgactcttcc tgttactgga gttgacgcgt gggtattcaa gtggaacaca 2520 aggatgtgtt tgtagcaaga aggagttctg aaacttcttt tcaccatgca ttgtttgaga 2580 tgactagtgc gtctgtggtt gtgttgaagt caaaggaact tgtcccagga gtgttcccaa 2640 cgtatgaaga cagagggata attaactctc ttacgttgcg gaatcgaact tttaacttaa 2700 gcaaaccttt tgtggaagca gatggagcaa taaccacatc tgtgatgtgg tcatttgaga 2760 ttgataaatt atctgccgat actgctgttt ttgaactgaa tttcggggga accgtgttgg 2820 gtcatattag attggagttt ttatttgaaa caagtgtaaa acctaccgta attggtagtt 2880 ttaatcattc tgggttttca aataccacta aagaaatctt aatagttaat gactcgactg 2940 tggggaagtt taggagattc tgggttgatc aagagattat tcggggagat aactttcgaa 3000 ttgctttcaa gtggccaaat ttggtcaggg acggcaacag tggagagtac aacatagtgg 3060 ggcttttcca tagtcacaaa gccagaccac atacgtggcc cttgattagt ggtctattca 3120 cacccactac agtctcaaaa gttttcaaga aagagaaaat caaatttgag taccagacta 3180 ctatatctgg agatgcttct tcggcatctg agaagcgacc ttttcatctg acgattgtcg 3240 tcgcttcttc aactgatttg gaagagttgg tggtcgattt tgatatcttc gattctcctg 3300 gatggtctca tagcgtgagc agtgagtcta ctaaacagag caagaaagtc acgtttgtac 3360 ttacttctgt gttacctcga gagaaaagat gttattggtt gggaaacttn tcgattatag 3420 tgaaggatgg taagagttac caccgtgtcc ttttcgatga tttggtcatt aattagtgga 3480 aaggtacttt gcttacgttt ctgttactaa catatttgtt ttgctttcaa aagtcatcaa 3540 attcagaact ttctaagaag aaatttaaag aaggaaaaga gtttgggaca ccaaaaagat 3600 tttaaagaga tgatgttccg tttggaattg attaattctt taccttttgt ttttatttta 3660 tattgttatc tgtttctgtg tatagactgt ttgagattgg cgtttggccg actcattgtc 3720 ttaccatagg ggaacggact ttgtttgtgt tgttatttta tttgtatttt attaaaattc 3780 tcaatgatct gaaaaggctt tgttgccaag agattattgg ggggtgagta agtactttta 3840 aagtgatgat ggttacaaag gcaaaagggg taaaacccct cgcctacgta agcgttatta 3900 cgccc 3905 //