Dbfetch
ID DQ443019; SV 1; linear; genomic RNA; STD; VRL; 1828 BP. XX AC DQ443019; XX DT 06-APR-2006 (Rel. 87, Created) DT 01-AUG-2006 (Rel. 88, Last updated, Version 2) XX DE Pelargonium flower break virus isolate SP25 clone 2 putative movement DE protein (p7), putative movement protein (p12), and coat protein (CP) genes, DE complete cds. XX KW . XX OS Pelargonium flower break virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphacarmovirus. XX RN [1] RP 1-1828 RX DOI; 10.1128/JVI.00603-06. RX PUBMED; 16873268. RA Rico P., Ivars P., Elena S.F., Hernandez C.; RT "Insights into the selective pressures restricting Pelargonium flower break RT virus genome variability: Evidence for host adaptation"; RL J. Virol. 80(16):8124-8132(2006). XX RN [2] RP 1-1828 RA Rico P., Ivars P., Elena S.F., Hernandez C.; RT ; RL Submitted (06-MAR-2006) to the INSDC. RL Biologia del estres, Instituto de Biologia Molecular y Celular de Plantas, RL Avda. de los Naranjos s/n, Valencia, Valencia 46022, Spain XX DR MD5; 1022efc1d474f4a2abf22b7ad26627e4. DR EuropePMC; PMC1563836; 16873268. XX FH Key Location/Qualifiers FH FT source 1..1828 FT /organism="Pelargonium flower break virus" FT /host="Pelargonium" FT /isolate="SP25" FT /mol_type="genomic RNA" FT /country="Spain" FT /clone="2" FT /db_xref="taxon:35291" FT gene 193..399 FT /gene="p7" FT CDS 193..399 FT /codon_start=1 FT /gene="p7" FT /product="putative movement protein" FT /db_xref="GOA:Q70WT9" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q70WT9" FT /protein_id="ABD93259.1" FT /translation="MASKVIVPDLGSDNEIDVSVGGRGNRGKQKGKISVAKDAVSKRTS FT DGGNGGSWVVVAETVSVNIHFNF" FT gene 233..553 FT /gene="p12" FT CDS 233..553 FT /codon_start=1 FT /gene="p12" FT /product="putative movement protein" FT /db_xref="GOA:Q1PGE5" FT /db_xref="UniProtKB/TrEMBL:Q1PGE5" FT /protein_id="ABD93260.1" FT /translation="MRLTCQWEDVGIGENRRVRYPSQRTLSPNGHLMVVMGVLGLLWLR FT PFRSIYTSTFSMPPLINLQHILNLTLLSLILSSFILAERVTHNQYSNDNSKAQYIRIST FT GQ" FT gene 555..1592 FT /gene="CP" FT CDS 555..1592 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q1PGJ8" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR013669" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q1PGJ8" FT /protein_id="ABD93261.1" FT /translation="MDAYKNDPIVRQAVAKGVAWAVKLNTRGWSSLTTQQKKAARSALS FT VIQSPAVVVPRRTRVPNPVPAGLKSGNGKAGKSSTLTRSEFICNVSSTTGVTPTFQSWT FT INPREVKSFPQSSVCSVGYNKYRITDFRIRFSTSCSDTMNGKVAIGFTPDSSDPVPVDK FT SQLYGMQVYADTPAKESVTLKTAADNTIRFLRDSSSDDAKLVDYGRVVLATYGFDSTAP FT SVIGELFFEYTVVYLDPTYVVALTQHGTLTTSSGPPYATLTTTATSTSMELSTHGKWLV FT IWVSADEVINSPVISGSGASGSVTVVSDAQTTVVAVVTANLPGAIISNTSTAAPSSLEW FT YVSRL" XX SQ Sequence 1828 BP; 463 A; 448 C; 485 G; 432 T; 0 other; atcaggaacg tacaggttag cccagaactc ttctcgggcc tatggttcag ttagcgagat 60 ggcgcgtttt agtttcttcc tggcatttgg agttatccca gatgctcaga ttgccttgga 120 ggaacacata agagacatgc ccgtcgcagc cgaatttggg cccgatgaaa gtctggcaga 180 ccacacaatt gaatggcttc taaagtgatc gttcctgatt tgggcagtga taatgagatt 240 gacgtgtcag tgggaggacg tgggaatagg ggaaaacaga agggtaagat atccgtcgca 300 aaggacgctg tctccaaacg gacatctgat ggtggtaatg ggggttcttg ggttgttgtg 360 gctgagaccg tttcggtcaa tatacacttc aacttttagc atgccccctc tgataaacct 420 ccaacacata ttaaatctta ccttgttgtc cctgattcta agttctttca tcttggcaga 480 gagagtaacg cacaatcagt actcaaacga caacagcaaa gcgcaatata tacggatctc 540 aactgggcaa taacatggac gcctacaaga atgacccaat agttaggcag gcagtggcaa 600 agggagtagc ttgggcggtt aagctgaaca ctagagggtg gtcttcattg accacccaac 660 agaagaaagc tgcgcgctca gctctgtctg tgatacaatc cccagcggtg gttgtacctc 720 gcagaaccag agtaccaaac ccagtacccg cgggcctgaa atcagggaat ggcaaggcag 780 ggaaaagctc aactctaacc cgatcggagt ttatctgcaa cgtatcgagc acaaccgggg 840 tgaccccgac ttttcaatca tggaccataa atcctaggga ggtcaaaagt ttcccacaat 900 cttccgtctg ctcggttggc tacaacaagt acaggattac ggacttcagg attaggtttt 960 ctacttcctg ctccgacact atgaatggga aggtagccat tggcttcact cccgactcta 1020 gcgatccggt tcctgttgat aagtcacagc tgtacgggat gcaggtgtat gccgacactc 1080 cagcaaagga gtcggtcacc ttgaagacgg ctgcagataa cacgattagg ttcctgcggg 1140 attcatccag cgatgatgcc aagctggtgg attatggccg cgtagtttta gccacatacg 1200 gtttcgatag cacagctccg tcagtgatag gagagctgtt cttcgagtac accgtagttt 1260 atctcgaccc tacctatgtc gtggctttaa cacaacatgg cacgttgacc acctcatctg 1320 gccccccata tgctaccttg accaccactg ccacttcaac atccatggaa ttaagcaccc 1380 atggaaagtg gctagtgatt tgggtctcgg cagacgaggt gattaactct ccggttatat 1440 ccgggtccgg ggcaagcgga tccgtaactg tcgttagcga cgcacagact actgttgttg 1500 cagtggttac cgcaaacttg ccaggcgcca tcatttccaa cacttcaacc gctgcccctt 1560 cgtcactgga gtggtacgta tctaggctat gagagggcag tcaccctacc ttctgccaga 1620 ggttcccgga ggagtagtga tcctttgggg gtgattcata gctaggaaag gtcggagagt 1680 tgggaggagg ccaactgggg gaggtgctag gagcaccaga ggcagcagag caaaaatccg 1740 ggtttcatcg cctggtgcgg gcgctcaatg ctgctaacaa gttcctgaag gaagaaaggt 1800 tttggtcgat ggagacctta acccgccc 1828 //