Dbfetch
ID DQ443004; SV 1; linear; genomic RNA; STD; VRL; 1828 BP. XX AC DQ443004; XX DT 06-APR-2006 (Rel. 87, Created) DT 01-AUG-2006 (Rel. 88, Last updated, Version 2) XX DE Pelargonium flower break virus isolate SP1 clone 2 putative movement DE protein (p7), putative movement protein (p12), and coat protein (CP) genes, DE complete cds. XX KW . XX OS Pelargonium flower break virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphacarmovirus. XX RN [1] RP 1-1828 RX DOI; 10.1128/JVI.00603-06. RX PUBMED; 16873268. RA Rico P., Ivars P., Elena S.F., Hernandez C.; RT "Insights into the selective pressures restricting Pelargonium flower break RT virus genome variability: Evidence for host adaptation"; RL J. Virol. 80(16):8124-8132(2006). XX RN [2] RP 1-1828 RA Rico P., Ivars P., Elena S.F., Hernandez C.; RT ; RL Submitted (06-MAR-2006) to the INSDC. RL Biologia del estres, Instituto de Biologia Molecular y Celular de Plantas, RL Avda. de los Naranjos s/n, Valencia, Valencia 46022, Spain XX DR MD5; 2d14da3905f4a794558b739122b4056f. DR EuropePMC; PMC1563836; 16873268. XX FH Key Location/Qualifiers FH FT source 1..1828 FT /organism="Pelargonium flower break virus" FT /host="Pelargonium" FT /isolate="SP1" FT /mol_type="genomic RNA" FT /country="Spain" FT /clone="2" FT /db_xref="taxon:35291" FT gene 193..399 FT /gene="p7" FT CDS 193..399 FT /codon_start=1 FT /gene="p7" FT /product="putative movement protein" FT /db_xref="GOA:Q70WT9" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q70WT9" FT /protein_id="ABD93214.1" FT /translation="MASKVIVPDLGSDNEIDVSVGGRGNRGKQKGKISVAKDAVSKRTS FT DGGNGGSWVVVAETVSVNIHFNF" FT gene 233..550 FT /gene="p12" FT CDS 233..550 FT /codon_start=1 FT /gene="p12" FT /product="putative movement protein" FT /db_xref="GOA:Q1PGM3" FT /db_xref="UniProtKB/TrEMBL:Q1PGM3" FT /protein_id="ABD93215.1" FT /translation="MRLTCQWEDVGTGENRRVRYPSQRTLSPNGHLMVVMGVLGLLWLR FT PFRSIYTSTFSMPPLINLQHILNLTLLTLILSSFILAERVTHNQYSNDNSKAQYIRIST FT G" FT gene 555..1592 FT /gene="CP" FT CDS 555..1592 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q1PGP0" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q1PGP0" FT /protein_id="ABD93216.1" FT /translation="MDAYKNDPIVRQAVAKGVAWAVKLNTRGWSSLTTQQKKAARSALS FT VIQSPAVVVPRRTRVRNPVPAGLKSGNGKAGKSSTLTRSEFICNVSSTTGVTPTFQSWI FT INPREVKSFPQSSVCSVGYNKYRITDFRIRFSTSCSDTMNGKVAIGFTPDSSDPVPVDK FT SQLYGMQVYADTPAKESVTLKTAADNTIRFLRDSSSDDAKLVDYGRVFLATYGFDSTAP FT SVIGELFFEYTVVYLDPTYVVALTQHGTLTTSSGPPYATLTTTATSTSMELNTHGKWLV FT VWVSADEVINSPVISGSGASGSVSVVSDSQTTVVAVVTANLPGAIISNSSTAAPSSLEW FT YVSRL" XX SQ Sequence 1828 BP; 463 A; 450 C; 485 G; 430 T; 0 other; atcaggaacg tacaggttag cccagaattc ttctcgggcc tatggttcag ttagcgagat 60 ggcgcgtttt agtttcttcc tggcattcgg agttatccca gatgctcaga ttgccttgga 120 gaaacacata cgagacatgc ccgtcgcagc tgaatttggg cccgatgaaa gtctggcaga 180 ccacacaatt gaatggcttc taaagtgatc gttcctgatt tgggtagtga caatgagatt 240 gacgtgtcag tgggaggacg tgggaacagg ggaaaacaga agggtaagat atccgtcgca 300 aaggacgctg tctccaaacg gacatctgat ggtggtaatg ggggttcttg ggttgttgtg 360 gctgagaccg tttcggtcaa tatacacttc aacttttagc atgccccctc tgataaacct 420 ccaacacata ctgaatctta ccttgttgac cctgattctg agttctttca tcttggcaga 480 gagagtaacg cacaatcagt actcaaacga caacagcaaa gcgcaatata tacggatctc 540 aactgggtaa taacatggac gcctacaaga atgacccaat agttaggcag gcagtggcaa 600 agggagtagc ttgggcggtt aagctgaaca ctagagggtg gtcttcattg accacccaac 660 agaagaaagc agcgcgctca gctctgtctg tgatacaatc cccagcggtg gttgtacctc 720 gcagaaccag agtacgaaac ccagtacccg cgggcctgaa atcagggaat ggcaaggcag 780 ggaaaagctc aactctaacc cgatcggagt ttatctgcaa cgtatcgagc acaaccgggg 840 tgaccccgac tttccaatca tggataataa atcctaggga ggtcaaaagt ttcccacaat 900 cttccgtctg ctcggttggc tacaacaagt acaggattac ggacttcagg attaggtttt 960 ctacttcctg ttccgacact atgaatggga aggtggccat tggcttcact cccgactcta 1020 gcgatccggt ccctgttgat aagtcacagc tgtacgggat gcaggtgtat gccgacactc 1080 cagcaaagga gtcggtcacc ttgaagacgg ctgcagataa cacgatcagg ttcctgcggg 1140 attcatccag cgatgatgcc aagctggtgg attatggccg cgtattttta gccacatacg 1200 gattcgatag cacagctccg tcagtgatag gagagctgtt cttcgagtac accgtagttt 1260 acctcgaccc tacctatgtc gtggctttaa cacaacatgg cacgttgacc acctcatctg 1320 gccccccata tgctaccttg accaccactg ccacttcaac atccatggaa ttaaacaccc 1380 atggaaagtg gctagtggtt tgggtctcgg cagacgaggt gatcaactct ccggttatat 1440 ccgggtccgg ggcaagcgga tccgtatctg tcgttagcga ctcacagacc actgttgttg 1500 cagtggttac cgcaaacttg ccaggcgcca tcatctctaa ctcttcaacc gctgcccctt 1560 cgtcactgga gtggtacgta tctaggctat gagagggcag tcaccctacc ttctgccaga 1620 ggttcccgga ggagtagtga tcctttgggg gtgattcata gctaagaaag gttggagagt 1680 tgggaggagg ccaactgggg gaggtgctag gagcaccaga ggcagcagag caaaaatccg 1740 ggtttcatcg cctggtgcgg gcgctcaatg ctgctaacaa gttcctgaag gaagaaaggt 1800 tttggtcgat ggagacctta acccgccc 1828 //