ID DQ431238; SV 1; linear; genomic RNA; STD; VRL; 2930 BP. XX AC DQ431238; XX DT 28-MAR-2006 (Rel. 87, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate P170RB putative truncated NSs and DE nucleocapsid genes, complete cds. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2930 RA Margaria P., Ciuffo M., Turina M.; RT "Molecular characterization of resistance-breaking strains of Tomato RT spotted wilt virus (Tospovirus, Bunyaviridae) infecting resistant pepper RT carrying the TSW gene"; RL Unpublished. XX RN [2] RP 1-2930 RA Margaria P., Ciuffo M., Turina M.; RT ; RL Submitted (03-MAR-2006) to the INSDC. RL IVV, Cnr, Strada delle Cacce 73, Torino, TO 10135, Italy XX DR MD5; 27a7634824192b4097f5a132ddd15e1e. XX FH Key Location/Qualifiers FH FT source 1..2930 FT /organism="Orthotospovirus tomatomaculae" FT /host="pepper" FT /isolate="P170RB" FT /mol_type="genomic RNA" FT /country="Italy" FT /isolation_source="glasshouse" FT /note="able to overcome TSW resistance gene in pepper" FT /db_xref="taxon:3052585" FT CDS 89..805 FT /codon_start=1 FT /product="putative truncated NSs" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q1W6C9" FT /protein_id="ABD92815.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPSFNQVESNNRTVNSLAVKSLL FT MSAENNSKLPLILISN" FT CDS complement(2003..2779) FT /codon_start=1 FT /product="nucleocapsid" FT /db_xref="GOA:Q88910" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q88910" FT /protein_id="ABD92816.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA" XX SQ Sequence 2930 BP; 934 A; 545 C; 468 G; 983 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggcactg gttctccact agttcaaacc cagctgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcattaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatacta acggagtgaa 420 acatcaaggt catttgaaag ttttgtctcc tgctcagctc cactctattg gatctaccat 480 gaacagatct gatattacag accgattcca gcttcaagaa aaagacataa ttcccaatga 540 cagatacatc gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttggg caaagtgaat gttttatccc ctaacaggaa 660 tgtccatgaa tggctgtaca gtttcaagcc aagtttcaat caagttgaaa gcaacaacag 720 aactgtaaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca actcaaagct 780 tccactgatt ctcatttcaa actgagcctc tggctaaggg tcccaaaggt tctgaagcag 840 gtctctattc agaaattgtt caaagttgca ggagacgaaa caaataaaac attttatttg 900 tctattgctt gcattccaaa ccataacagt gttgagacag ctttaaacat ttctgttatt 960 tgcaagcatc agctcccaat tcgcaaatgt aaagctcctt ttgaattatc aatgatgttt 1020 tctgatttaa aggagcctta caacattgtt catgatcctt catatcctca gagaattgtt 1080 catgctctgc ttgaaactca cacatctttt gcacaagttc tttgcaacaa cttacaagaa 1140 gatgtgatca tctacacttt gaacaactat gagctaactc ctggaaagtt agatttaggt 1200 gaaagaacct taaattacag tgaagatatc tgcaaaagga aatatttcct ttcaaaaaca 1260 cttgaatgtc ttccatctaa cacacaaact atgtcttact tggacagcat ccaaatccct 1320 tcctggaaga tagactttgc caggggagaa attaagattt ccccacaacc tgtttcagtt 1380 gcaaaatctt tgttaaagct tgatttaagc gggatcaaaa agaaagaatc taagatcccg 1440 gaaacatatg cttcaggatc aaaataatct tgctgtttcc ggtttttcta attatgttat 1500 gtttattttc tttctttact tataattatt tctctgtttt gtcatttctt ttaagttcct 1560 cctgtttaat agaaaccata aacaaaaaat aaaataaaaa taaaatcaaa aatgaaacaa 1620 aaatcaaaaa atgaaacaaa aataaaaaat aaaaaatgaa ataaaaacaa caaaaaaatt 1680 aaaaacaaaa acccaaaaaa gatcccgaaa gggacaatct tggccaaatt tgggttttgt 1740 tttgtttttg ttttttgttt tttgttttta tttttatttt atttatttat tttattttat 1800 ttttattttt tattttgttt tttattttat gttttttgtt gtttttgtta ttttatttat 1860 ttattaagca caacacacag aaagcaaact ttaattaaac acacttattt taaatttaac 1920 acactaagca agcacaagca ataaagataa agaaagcttt atatatttgt agacttttcc 1980 ataatttaac ttacagctga ttttaagcaa gttctgcgag ttttgcctgt tttttaaccc 2040 cgaacatttc atagaacttg ttaagagttt cactgtaatg ttccatagca atacttcctt 2100 tagcattagg attgctggag ctgagtatag cagcatactc ttttcctttc ttcacctgat 2160 cttcattcat ttcaaatgct ttgcttttca gcacagtgca aacttttcct aaggcttctc 2220 tggtgtcata cttctttggg tcaatcccga ggtctttgta ttttgcatcc tgatatatag 2280 ccaagacaac actgatcatc tcaaagctat caactgaagc aataagaggt aagctacctc 2340 ccagcattat ggcaagcctc acagactttg catcatcaag aggtaatcca taggcttgaa 2400 tcaaagggtg ggaagcaatc ttagatttga tagtattgag attctcagaa ttcccagttt 2460 cctctacaag cctgaccctg atcaagctat caagccttct gaaggtcatg tcagtggctc 2520 caatcctgtc tgaagttttc tttatggtaa ttttaccaaa agtaaaatca ctttgtttaa 2580 taaccttcat tatactctga cgattcttca ggaatgtcag acatgaaata acgctcatct 2640 tcttgatctg gtcgaggttt tccagacaaa aagtcttgaa gttgaatgct accagattct 2700 gatcttcctc aaactcaagg tctttgcctt gtgtcaacaa agcaacaatg ctttccttag 2760 tgagcttaac cttagacatg atgattgtag aagttgttat atgctttgac cgtatgtaat 2820 tcaaggtgcg aaagtgcaac tctgtattcc gcagtcgttt cttaggattt taatgtgatg 2880 atttgtaaga ctgagtgtta aggtttgaat aaaattgaca caattgctct 2930 //