ID   DQ412732; SV 1; linear; genomic RNA; STD; VRL; 2220 BP.
XX
AC   DQ412732;
XX
DT   18-MAR-2006 (Rel. 87, Created)
DT   18-MAR-2006 (Rel. 87, Last updated, Version 1)
XX
DE   Cucumber mosaic virus isolate Phy segment RNA3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2220
RA   Liao Q., Du Z., Chen J.;
RT   "Clone of the complete genome and construction of infectious transcripts
RT   RNA in Cucumber mosaic virus Chlorosis strain";
RL   Unpublished.
XX
RN   [2]
RP   1-2220
RA   Liao Q., Du Z., Chen J.;
RT   ;
RL   Submitted (22-FEB-2006) to the INSDC.
RL   College of Life Sciences, Zhejiang University, Kaixuan Road 268#, Hangzhou,
RL   Zhejiang 310029, China
XX
DR   MD5; 9c0145eec8a4ea4c7bb347dd4c248f96.
DR   EuropePMC; PMC3030956; 21265043.
DR   EuropePMC; PMC3550734; 23637513.
DR   EuropePMC; PMC3550809; 23730005.
DR   EuropePMC; PMC4188193; 25674612.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2220
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /isolate="Phy"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:12305"
FT   CDS             122..961
FT                   /codon_start=1
FT                   /product="3a protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q202D5"
FT                   /protein_id="ABD73005.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDELQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDAGELSSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDRQCVTLHNHDLPALVSFQPTYDCPMEIVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYVLTDAKINQNARSESEELNVESPPIAIGSSSASRSETFGPQVVNGL"
FT   CDS             1262..1918
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q202D4"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q202D4"
FT                   /protein_id="ABD73006.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSHSASSSADATFKVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDVEHQRIPTSGVLPV"
XX
SQ   Sequence 2220 BP; 509 A; 522 C; 534 G; 655 T; 0 other;
     gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtgtcg cgtcgtgtcg agtcgtgttg        60
     tccgcacatt tgagtcgtgc tgtccgcaca tttttctttc agtgtgttag attcccgagg       120
     tatggctttc caaggtacca gtaggacttt aactcaacag tcctcagcgg ctacgtctga       180
     cgaacttcaa aagatattat ttagccctga agccattaag aagatggcta ctgagtgtga       240
     cctaggccgg catcattgga tgcgcgctga taatgctatt tcagtccggc ccctcgttcc       300
     cgaagtaacc cacggtcgta ttgcttcttt ctttaagtct ggatatgatg ctggtgaatt       360
     gagctctaaa ggatatatga gcgtccctca agtgttgtgt gctgttactc gaacagtttc       420
     caccgacgct gaaggatctt tgagaattta cctagctgat ttaggcgata aggagttatc       480
     tcccatagat agacaatgcg ttacattaca taaccatgat ctacccgctt tagtgtcttt       540
     ccagccgacg tatgattgtc ctatggaaat tgttgggaat cgtaagcggt gttttgctgt       600
     tgttatcgaa agacatggtt atattgggta taccggcacc acagctagcg tgtgtagtaa       660
     ttggcaagca cggttttctt ctaagaataa caactacact catatcgcag ctgggaagac       720
     tctagtactg ccattcaaca gattagctga gcaaacaaaa ccgtcagctg tcgctcgcct       780
     gttgaagtcg caattaaaca acatagaatc ttcgcaatac gttttaacgg atgctaagat       840
     taatcagaat gcgcgcagtg agtccgagga attaaatgtt gagagccctc ccatcgcaat       900
     cgggagttct tccgcgtccc gctccgaaac cttcggaccg caggtggtta acggtcttta       960
     gtgtcttcgt tgcgtattag tatataagta tgtgtgagtc tgtacataat actatatcta      1020
     tagtgtcctg tgtgagttga tacagtagac aactgtgacg cgatgtcgtg ttgagaagag      1080
     agcacatctg gttctagtaa acccacaaca tatctttgag gttcaattcc tctcgttccc      1140
     tgttgggtcc ctttactttt tcatggatgc ttctccacga gattgcgttt cgtctactta      1200
     tcttaagagt gttgtgctgt gtgttttctc tttcgtgtag tagtttgagt cgagtcgagt      1260
     catggacaaa tctgaatcaa ccagtgctgg tcgcaaccgt cgacgtcgtc cgcgtcgtgg      1320
     ttcccactcc gcttcctcct ccgcggatgc tacctttaaa gtcttgtcgc agcagctttc      1380
     gcgacttaac aagacgttag cagctggtcg tccaactatt aaccacccaa cctttgtggg      1440
     tagtgaacgc tgtaaacctg ggtacacgtt cacatctatc accctgaagc caccgaaaat      1500
     agaccgtggg tcttattatg gtaaaaggtt gttgctacct gattcagtca cggagttcga      1560
     taagaagctt gtttcgcgca ttcaaattcg agttaatcct ttgccgaaat ttgattctac      1620
     tgtgtgggtg acggtccgta aagttcctgc ctcctcggac ctatccgttg ccgctatctc      1680
     tgctatgttt gcggacggag cctcaccagt actggtttat cagtatgctg catccggcgt      1740
     tcaagccaac aacaaactgt tgtacgatct ttcggcgatg cgcgctgata ttggtgacat      1800
     gagaaagtac gccgtcctcg tgtattcaaa agacgatgcg ctcgagacgg acgagttggt      1860
     acttcatgtc gacgtcgagc accaacgcat tcccacatct ggggtgctcc cagtttgaat      1920
     ccgtgttttc ccagaatcct ccctccggtc ctgtggcggg agctgagttg gtagtattgc      1980
     tttaaactgc ctgaagtcac taaacgcttt gtggtgaacg ggttgtccat ccagcttacg      2040
     actaaaatgg tcagtcgtgg agaaatccac gccagtggac ttacaagtct ctgaggtgcc      2100
     tttgaaacca tctcctaggt ttcttcggaa ggacttcggt ccgtgtactt ctagcacaag      2160
     atgctagttt cagggtacgg gcatcccccc actttagtgg gggtctccaa aaggagacca      2220
//