ID   DQ409209; SV 1; linear; genomic RNA; STD; VRL; 2179 BP.
XX
AC   DQ409209;
XX
DT   15-MAR-2006 (Rel. 87, Created)
DT   15-MAR-2006 (Rel. 87, Last updated, Version 1)
XX
DE   Cucumber mosaic virus segment RNA3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2179
RA   Shentu S., Chen J.;
RT   "Clone of CMV RNA3 isolated from Pinellia ternata";
RL   Unpublished.
XX
RN   [2]
RP   1-2179
RA   Shentu S., Chen J.;
RT   ;
RL   Submitted (21-FEB-2006) to the INSDC.
RL   College of Life Science, Zhejiang University, Kaixuan Road 268#, Hangzhou,
RL   Zhejiang 310029, China
XX
DR   MD5; 08decc86581c4303342fdde28302fa56.
DR   EuropePMC; PMC3550734; 23637513.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2179
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="Pinellia ternata"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /PCR_primers="fwd_seq:
FT                   aatcgcatgctaatacgactcactataggtaatcttaccactgtgtgtgtg,
FT                   rev_seq: aattcccgggtggtctcctt"
FT                   /db_xref="taxon:12305"
FT   CDS             96..935
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q206K6"
FT                   /protein_id="ABD72574.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDELQKILFSPDAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGNIASFFKSGYDAGELRSKGYMSIPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVVE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPYNRLAEQSKPSAVARLLK
FT                   SQLNNIESSRYVLPCAKNNQNARSESEELNVESPPVAIGSSSASRSETFRPEVVNGL"
FT   CDS             1237..1893
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q206K5"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q206K5"
FT                   /protein_id="ABD72575.1"
FT                   /translation="MDKSESPSAGRNRRRRPRRGSRSASSSADANFRVLSQQLSRLNKT
FT                   LAAGRPTVNHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLVLPDSVTDFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVSAISAMFAGGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALESDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 2179 BP; 499 A; 510 C; 536 G; 634 T; 0 other;
     gtaatcttac cactgtgtgt gtgtgtgtgt gtgtcgtgtc gcgtcgagtc gtgctgtccg        60
     cacatttatc attagtgtgt tagaataccc gaggcatggc tttccaaggt accagtagga       120
     ctttaactca acagtcctca gcggcgacgt ctgacgagct tcagaagata ttgttcagcc       180
     ctgatgccat taagaaaatg gctactgagt gtgacctagg tcgacatcat tggatgcgcg       240
     ctgataacgc catctctgtc cgacccctcg ttcccgaagt aacccacggt aacattgcgt       300
     ccttctttaa gtctggatat gatgccggtg aattgcgttc taaaggatat atgagtatcc       360
     ctcaggtgtt gtgtgccgtt acacgaacgg tttccactga tgccgaagga tctttgagaa       420
     tttacctggc tgatttgggc gacaaggagt tatctcctat agatggacaa tgtgtttcat       480
     tacataacca tgatcttccc gctttagtgt ctttccaacc gacgtatgat tgtcctatgg       540
     agacagttgg gaatcgtaag cggtgctttg ctgttgtcgt tgagagacat ggttatattg       600
     ggtataccgg caccacagcc agcgtgtgta gtaattggca agctcgattt tcttctaaga       660
     ataacaatta cactcacatc gcggctggga agactctagt actgccatac aacagattag       720
     ctgagcaatc aaaaccgtca gcggtggctc gcctgttgaa gtcgcaattg aacaacatag       780
     aatcttctcg ctacgtttta ccgtgtgcga agaataatca aaatgcgcgc agtgagtccg       840
     aggaattgaa tgttgaaagc cctcctgtcg caatcgggag ttcttccgcg tcccgctccg       900
     aaacctttag accggaggtg gttaacggtc tttagtattt tggtgcgtat tagtatacgt       960
     gtatgtgttt gtctgtacat attaccgtat ctatggtgtc ctgtacgtgt tgagttgaaa      1020
     cagtagacaa ccgtgacgcg acgtcgtgtt gagaagggaa cacatctggt tttagtaagt      1080
     ccacatcaca gctttgaggt tcaattcctc ttgctccctg ttgggcccct tactttttca      1140
     tggatgcttc tccacgaaat tgcgttctgt ctactggagt aaagtgagtg agtgtgtgtg      1200
     ttatatcact ttctttctcg tagattgagt cgagtcatgg acaaatctga atcacccagt      1260
     gccggtcgta accgtcgacg tcgtccgcgt cgtggttccc gctccgcttc ctcctccgcg      1320
     gatgctaact ttcgagtctt gtcgcaacaa ctttcgcgac tcaataagac gttagcagct      1380
     ggtcgtccaa ctgttaacca cccaaccttt gttggtagtg aacgttgtaa acctggttat      1440
     acgttcacat ctattacctt aaagccacca aaaatagacc gcgggtctta ttatggcaaa      1500
     aggttggtac tgcctgattc agtcacggat tttgataaga aacttgtttc gcgcatccag      1560
     attcgagtta atcctttgcc gaaatttgat tctaccgtgt gggttacggt ccggaaagtt      1620
     cctgcctcct cggacttatc cgtttctgcc atttcagcta tgtttgcagg cggagcctca      1680
     ccggtactgg tttatcagta tgcagcatcc ggggtccaag ctaataataa attattgtac      1740
     gacctttcag cgatgcgggc tgatatcggc gacatgagaa agtacgccgt cctcgtgtat      1800
     tcaaaagacg atgcgcttga gtcagacgag ctagtacttc atgttgacat tgagcaccaa      1860
     cgcattccca cgtctggtgt gctcccagtt tgaatccgtg ttccaggatc caccctcttt      1920
     tgttgtgcgg gtgctgagtt ggcagtgttg ctacaaactg tctgaagtcg ctaagtgcga      1980
     acgggttgtc catccagctt acggctaaaa tggtcagtcg tggagaaatc cacgccggag      2040
     gtttacaaac ctttgaggcg cctttgaaac cgactcctgg gtttcttcgg aaggactttg      2100
     tccgtgtact tctagcacaa gatgctagtg tagggtacag gtgcccccca ctatctagtg      2160
     gggctccaaa aggagacca                                                   2179
//