ID DQ402477; SV 1; linear; genomic RNA; STD; VRL; 3356 BP. XX AC DQ402477; XX DT 07-MAR-2006 (Rel. 87, Created) DT 07-MAR-2006 (Rel. 87, Last updated, Version 1) XX DE Cucumber mosaic virus isolate Phy from China segment RNA1, complete DE sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3356 RA Liao Q., Chen J.; RT "Clone of the complete genome and construction of infectious transcripts RT RNA in Cucumber mosaic virus chlorosis strain"; RL Unpublished. XX RN [2] RP 1-3356 RA Liao Q., Chen J.; RT ; RL Submitted (13-FEB-2006) to the INSDC. RL Zhejiang University, College of Life Sciences, Kaixuan Road 268#, Hangzhou, RL Zhejiang 310029, China XX DR MD5; 750ca6b7a5c2b68e15cc889e25d6f52e. DR EuropePMC; PMC3030956; 21265043. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3356 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /isolate="Phy" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:12305" FT CDS 95..3076 FT /codon_start=1 FT /product="1a protein" FT /db_xref="GOA:Q27HG4" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q27HG4" FT /protein_id="ABD61578.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTHPAAECKVQAHFAISIHGGYDMGFRGLCEAMNARGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRNAFSETEDVTPLSGKLNSTVFSRVRKFKTMVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGICPPEPIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKVLAAQKAEKLAEKLAQPVIEVSDRPEASSPTPDDPADVCGKEQEVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNMKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGFNERGLGPKSDGELYIVNSECVICYSES FT LFNVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPRGTHSKYTKW FT VSQSKVKRSVTSRAIASVTLVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEYCGMLDGDLIAEC FT IARA" XX SQ Sequence 3356 BP; 831 A; 740 C; 821 G; 964 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcccc tgtaaaacta ccctttgaaa 60 acctctcttt cttaatcttt tctctgaaat tcctatggcg acgtcctcgt tcaacatcaa 120 tgaattggta gcctcccacg gcgataaagg actactcgcg accgccctag ttgataagac 180 agctcatgag cagctcgagg agcaattaca acatcaacgt aggggccgta aggtctacat 240 ccggaacgtt ctgggtgtaa aggattctga ggtcatccgg aatcggtatg gaggaaagta 300 cgacctccat cttacccagc aggagtttgc tccccacggc ctagctggtg ccctccgctt 360 gtgtgaaact ctcgattgtc tagactcttt cccttcttca ggtctgcggc aggacctcgt 420 cttagacttc ggaggaagtt gggtcacaca ttacctccgc ggacataacg tacactgctg 480 ttccccttgc ttgggtatcc gcgataaaat gcgccacgcg gaacgcttga tgaacatgcg 540 caagattatc ttgaacgatc cacaacagtt cgatggtcgc cagccggact tttgcactca 600 cccggctgca gaatgcaaag tacaagccca ctttgctata tctattcatg gaggttatga 660 tatgggcttt agaggacttt gtgaagcgat gaacgctcgc ggaaccacca ttttgaaggg 720 aacgatgatg ttcgatggtg cgatgatgtt tgacgaccaa ggtgtaatac ctgaacttaa 780 ttgtcagtgg agaaagatta ggaatgcttt ctctgaaact gaagacgtca cgccgttgtc 840 tggtaaactt aattccacag tattttcccg cgtgcgtaaa ttcaagacca tggtggcttt 900 tgattttatc aatgagtcta ccatgtctta tgttcatgat tgggagaata taaaatcttt 960 tcttacagac cagacttact cataccgagg gatgacatat ggtattgagc gttgtgttat 1020 tcacgccggc attatgacgt acaagatcat cggtgtacct gggatatgtc cacccgaacc 1080 cattcgacat tgcatttggt tcccctctat taaggactat gttggtctga agattcccgc 1140 gtcgcaggac ttggttgaat ggaaaacagt gcgtatttta acgtcaacat tacgtgagac 1200 ggaagagatt gctatgaggt gttacaatga taagaaagcg tggatggagc agtttaaggt 1260 tatcttaggt gttctatctg cgaaatcatc taccattgtt attaatggta tgtccatgca 1320 atctggcgag cgtatagaca ttaacgatta tcactatatc ggcttcgcta ttctcctcca 1380 cacgaaaatg aagtatgaac agttgggaaa aatgtatgat atgtggaatg cttcgagtat 1440 ttcgaagtgg tttgcagcgt tgactcgtcc gctgcgtgtg tttttctcca gcgttgttca 1500 cgcattgttc ccgactttga gaccgcgcga ggaaaaggaa ttcctgatta agctctccac 1560 cttcgtgact tttaatgaag agtgctcatt tgacggtgga gaggagtggg acgtgatatc 1620 atctgctgca tacgttgcta cacaggctgt taccgatggg aaagttttgg ctgcgcagaa 1680 agccgagaag cttgctgaga agcttgcaca acccgtgatt gaggtatcgg acagacctga 1740 ggcgtcatct ccaacgcctg atgatccggc tgatgtttgt ggaaaggagc aagaggtttc 1800 ggaacttgac tctttatcag ctcagacacg ttcccccatc actagagttg ctgaaagggc 1860 tactgctatg ttagagtatg ccgcttatga gaaacagtta catgacacca cagtgtctaa 1920 cttgaaacgt atttggaaca tggcgggtgg tgatgacaag agaaactccc tcgagggtaa 1980 tatgaagttt gttttcgaca cgtattttac tgttgatccc atggtgaata ttcatttctc 2040 cacgggtagg tggatgcgtc ccgtgcctga gggaattgtt tactctgttg gttttaatga 2100 acgcgggtta ggtcctaagt ctgatgggga gctttatatt gtcaacagcg aatgcgtgat 2160 ttgctacagc gagtctcttt ttaatgtcac tcgctctctt caagctccaa ctggaactat 2220 tagtcaagtc gacggagttg ctggttgtgg gaaaaccaca gcaataaaat ccatttttga 2280 gccgtccact gacatgatcg ttaccgcgaa caagaaatcc gcccaagacg ttcgtatggc 2340 actctttaaa tcgtcggatt ccaaagaagc ctgcaccttc gttcgtactg ccgattctgt 2400 cctacttaat gaatgtccga ctgttagtag ggttttggtt gatgaagtcg tgctgcttca 2460 ctttggtcaa ttgtgtgctg tcatgtccaa gctgaaggct gtgcgagcca tatgtttcgg 2520 ggattctgag cagattgctt tttcttctcg cgatgcttcg tttgacatgc gtttctctaa 2580 gattattcct gatgaaacta gtgatgcgga tactacattc cgtagcccac aagatgtcgt 2640 gccgcttgta cgtctaatgg ctacgaaggc tcttccgaga ggaactcatt cgaaatacac 2700 taagtgggtt tctcaatcta aagtgaaaag gtctgttacg tctcgtgcca ttgccagtgt 2760 gacactggtt gatttggatt cttctaggtt ttatatcacg atgactcagg ctgacaaggc 2820 ttcactgatt tcaagagcga aggagatgaa cttaccaaag actttctgga acgaaaggat 2880 taaaactgtg cacgagtctc aaggcatttc tgaagaccac gttactttgg tgagattgaa 2940 gagcacaaag tgtgacctgt tcaaacagtt ttcatattgt cttgttgcct tgacaagaca 3000 taaggtcact ttccgctacg agtattgtgg tatgttagac ggcgatttaa tcgccgaatg 3060 tattgctcgt gcttagcggt gtccctcctt cgggcgggat ctgagttggc ggtaatctac 3120 aaaccgtctg aagtcactaa acgctttgcg gtgaacgggt tgtccatcca gcttacggct 3180 aaaatggtca gtcgtggaga aatccacgcc agcagactta caagtctctg aggtgccttt 3240 gaaaccacct cctaggtttc ttcggaagga cttcggtccg tgtacttcta gcacaagatg 3300 ctagtttcag ggtacgggca tccccccatt ttatgggggc ctccaaaagg agacca 3356 //