Dbfetch
ID DQ400848; SV 1; circular; genomic DNA; STD; VRL; 2729 BP. XX AC DQ400848; XX DT 14-MAR-2006 (Rel. 87, Created) DT 10-JAN-2008 (Rel. 94, Last updated, Version 2) XX DE Mungbean yellow mosaic virus segment DNA A, complete sequence. XX KW . XX OS Mungbean yellow mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2729 RX DOI; 10.1016/j.jviromet.2007.08.004. RX PUBMED; 17870189. RA Rouhibakhsh A., Priya J., Periasamy M., Haq Q.M., Malathi V.G.; RT "An improved DNA isolation method and PCR protocol for efficient detection RT of multicomponents of begomovirus in legumes"; RL J. Virol. Methods 147(1):37-42(2008). XX RN [2] RP 1-2729 RA Rohibakhsh A., Malathi V.G.; RT "Complete nucleotide sequences of DNA A genome of yellow mosaic virus RT isolate from blackgram in Vamban, Thamilnadou, India"; RL Unpublished. XX RN [3] RP 1-2729 RA Rohibakhsh A., Malathi V.G.; RT ; RL Submitted (07-FEB-2006) to the INSDC. RL Plant Pathology, Indian Agricultural Research Institute, Pusa Road, New RL Delhi, Delhi 110 012, India XX DR MD5; 281de244cf6ceb827defe9071a40e0bd. XX FH Key Location/Qualifiers FH FT source 1..2729 FT /organism="Mungbean yellow mosaic virus" FT /segment="DNA A" FT /mol_type="genomic DNA" FT /country="India:Vamban, Thamil Nadu" FT /isolation_source="Blackgram plant" FT /db_xref="taxon:33726" FT gene 142..492 FT /gene="AV2" FT CDS 142..492 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:Q209W4" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:Q209W4" FT /protein_id="ABD67445.1" FT /translation="MWDPLVNDFPKSLHGFRCMLAIKYLQYIQLNYPSNSLGFEYLTDL FT IQVLRIRKHAKAELRYRLLYPDIECAEEADLRHPAFLTCHCGKCPCQREKEEVDQPTHV FT EETEVLSVIPLS" FT gene 302..1078 FT /gene="AV1" FT CDS 302..1075 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="virion assembly" FT /db_xref="GOA:Q209W3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q209W3" FT /protein_id="ABD67444.1" FT /translation="MPKRNYDTAFSTPISNVRRRLTFDTPLSLPATAGSVPASAKRRRW FT TNRPMWRKPKYYRLYRSPDVPRGCEGPCKVQSFEAKHDISHVGKVICVTDVTRGMGITH FT RVGKRFCVKSIWVTGKIWMDENIKTKNHTNTVMFKLVRDRRPFGTPQDFGQVFNMYDNE FT PSTATVKNDLRDRYQVVRKFQATVTGGQYASKEQAIVSKFYRVNNYVVYNHQEAAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSILN" FT gene complement(719..970) FT /gene="AC5" FT CDS complement(719..970) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:Q209W2" FT /protein_id="ABD67449.1" FT /translation="MVFILRRLLVVVNNIIINTIKFTNYGLLLARILATSNCGLKLTHD FT LITITKIVLHSCSTGFIVIHVEHLTKVLWRAKWTSITH" FT gene complement(1072..1476) FT /gene="AC3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replication enhancer protein" FT /db_xref="GOA:Q209W1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q209W1" FT /protein_id="ABD67447.1" FT /translation="MDFRTGDNITAAQLRNGVFTWEVRNPLSFKIMQHRQIRPGSQMYV FT TQIRIMFNHGLKKALLMHKCFLDLKLYHYLTATSGMILSIFSRQLFRYLNNLGVISIGN FT VLNGASHILYEKLHHVEDVSFTHNVQYKLY" FT gene complement(1524..2612) FT /gene="AC1" FT CDS complement(1524..2612) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replication initiator protein" FT /db_xref="GOA:Q209W0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q209W0" FT /protein_id="ABD67446.1" FT /translation="MPRLGRFAINAKNYFLTYPRCPLTKEDVLEQLLALSTPVNKKFIR FT VCRELHEDGEPHLHVLLQFEGKLQTKNERFFDLVSPTRSAHYHPNVQAAKSASDVKSYM FT DKDGDVLDHGSFQVDGRSARGGKQSANDAYAEALNSGSKLQALNILREKAPKDYILQFH FT NLNCNLSRIFADDVPPYVSPYSLSAFDKVPSYISSWASENVRDPAARPERPISIVIEGD FT SRTGKTMWARALGPHNYLCGHLDLNNKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNVKYGKPTHIKGGIPTIFLCNPGPKSSYKEFLDEADNTALKLWASKSAEFYTLKEPL FT FSSVDQSATQGCQEASNSTLSN" FT gene complement(2162..2461) FT /gene="AC4" FT CDS complement(2162..2461) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q209V9" FT /protein_id="ABD67448.1" FT /translation="MKMENLISMFCFSSKGSSKRRTKGSSTWYPQPDQHITIRTFRQLK FT AHQMLSHTWTKTETSLTMEVSKSMADQLEEVNSLPTTLMPRHSIVDPSYRPSIY" XX SQ Sequence 2729 BP; 736 A; 568 C; 618 G; 807 T; 0 other; acctgaggac cccgcgaccg gtgtacgctt ttgcttttgg acccacctta tctttagtcg 60 ttcaatgata tgcgctcctc agcgcttaca taattcaaat ttgaattata aagagagctg 120 ccactttctt tattggcagc catgtgggat ccattggtga acgactttcc caaatcgttg 180 catggtttcc gttgtatgct tgccattaag tatttacaat acattcagct gaattatcct 240 tctaattctc ttggtttcga gtatttaaca gatttaatac aggttttacg tatacggaaa 300 catgccaaag cggaattacg ataccgcctt ctctaccccg atatcgaatg tgcggaggag 360 gctgaccttc gacaccccgc tttccttacc tgccactgcg ggaagtgtcc ctgccagcgc 420 gaaaaggagg aggtggacca accgacccat gtggaggaaa ccgaagtatt atcggttata 480 ccgctctcct gatgtcccac gtggttgtga aggaccgtgt aaggtccagt cctttgaggc 540 gaaacatgat atttcgcatg tcggcaaggt aatatgtgtc actgatgtga cacgaggcat 600 gggcatcact catagagttg ggaaacgatt ttgtgttaag tctatctggg ttacaggtaa 660 aatctggatg gatgagaaca tcaagacaaa gaatcacact aatactgtga tgttcaagtt 720 agtgcgtgat agacgtccat ttggcacgcc acaagacttt ggtcaagtgt tcaacatgta 780 tgacaatgaa cccagtactg caactgtgaa gaacgatctt cgtgatcgtt atcaggtcgt 840 gcgtaagttt caagccacag ttactggtgg ccaatatgcg agcaaggagc aagccatagt 900 tagtaaattt tatcgtgtta ataattatgt tgtttacaac caccaagagg cggcgaagta 960 tgaaaaccat actgagaatg cattgttatt gtatatggca tgtactcatg catcaaatcc 1020 tgtgtacgca acattgaaaa ttcggatcta tttttatgat tcgattttaa attaataaag 1080 tttgtattga acattatgcg taaagcttac atcctccaca tggtggagtt tttcatacag 1140 gatatgtgag gcgccattta atacattgcc tatgctaatg acgcctaaat tatttaaata 1200 tctaaataat tgcctactaa aaattgataa tatcatccca gaagtcgccg tcaaataatg 1260 gtagagcttc agatccagga agcatttgtg catcagcagt gctttcttca acccgtggtt 1320 gaacattatc cgtatttggg tcacatacat ctgggaccct ggacgaattt gacggtgctg 1380 catgatcttg aaagagaggg gatttcgcac ctcccaagta aagacgccat tcctgagttg 1440 agctgcagtg atgttgtccc ctgtgcgaaa atccatagtt acggcagttg atatggatgt 1500 aataactaca cccacagctt aaatcaattc gagagcgtcg aattgctcgc ttcttggcaa 1560 ccttgtgttg cgctttgatc gacggaggag aaaagtggtt ctttgagggt gtagaattcc 1620 gcactctttg aagcccacaa tttgagtgct gtgttatcag cctcgtccaa gaactcttta 1680 taagaggatt tgggaccagg attgcataaa aagatggtgg ggataccacc tttaatgtga 1740 gtgggcttcc cgtacttgac gttagactgc cagtctcttt gcgcgcccat gaattctttg 1800 aaatgtttca aataatgggg atcaacgtca tcaatgacgt tataccaagc atcgttggaa 1860 tagatcttat tgttaagatc caagtggccg caaagataat tgtgaggacc taacgcacgt 1920 gcccacattg ttttacccgt gcgactatcg ccctcaatca caatgctaat cggtctttcc 1980 ggccgcgcag cgggatctct aacattttct gaagcccatg aagaaatgta acttgggact 2040 ttgtcaaatg ctgataagct ataaggtgac acataaggtg gaacatcatc tgcaaaaatc 2100 cgtgacaaat tacaatttaa attatgaaat tgtaaaatat aatctttagg agccttctcc 2160 ctcagtatat tgagggcctg taacttggat ccactattga gtgcctcggc ataagcgtcg 2220 ttggcagact gtttacctcc tctagctgat ctgccatcga cttggaaact tccatggtca 2280 aggacgtctc cgtctttgtc catgtatgac ttaacatctg atgcgctttt agctgcctga 2340 acgttcggat ggtaatgtgc tgatctggtt ggggatacca ggtcgaagaa cctttcgttc 2400 ttcgtttgga gcttcccttc gaactgaagc agaacatgga gatgaggttc tccatcttca 2460 tggagttcac gacagactcg tatgaacttc ttgttgacag gcgttgataa cgctagtagt 2520 tgttcaagaa cgtcctcctt tgtaagagga caacggggat aagtgaggaa atagttcttt 2580 gcgtttatag caaaacgacc gagtctaggc atattttggc gtcgttttgt atcggtgtct 2640 ctctaaaagt cctatgtatc ggtgtatcgg tgtcttattt atatgtatga gagttactaa 2700 aaccctcagg ggtcctcagc aataatatt 2729 //