ID DQ399549; SV 1; linear; genomic RNA; STD; VRL; 3037 BP. XX AC DQ399549; XX DT 11-MAR-2006 (Rel. 87, Created) DT 11-MAR-2006 (Rel. 87, Last updated, Version 1) XX DE Cucumber mosaic virus strain BX segment RNA2, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3037 RA Zhang H., Chen J.; RT "The complete nucleotide sequence of the genome RNA of a new Cucumber RT mosaic virus isolate from Pinellia ternata (Thunb.) in China"; RL Unpublished. XX RN [2] RP 1-3037 RA Zhang H., Chen J.; RT ; RL Submitted (12-FEB-2006) to the INSDC. RL Biological Science, Institute of Molecular Microbiology, Zhejiang RL University, Kaixuan Road 268#, Hangzhou, Zhejiang 310029, China XX DR MD5; d0f1aeac9afd1f86e03803c59e19f79f. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3037 FT /organism="Cucumber mosaic virus" FT /segment="RNA2" FT /host="Pinellia ternata" FT /strain="BX" FT /mol_type="genomic RNA" FT /country="China" FT /note="subgroup: I" FT /db_xref="taxon:12305" FT CDS 76..2652 FT /codon_start=1 FT /product="2a protein" FT /note="replication protein" FT /db_xref="GOA:Q20A32" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q20A32" FT /protein_id="ABD64218.1" FT /translation="MAFPAPTFSLANLLNGSYGVDTPEDVERLRREQREEAAAARRNYE FT PLPAVDVSESVLEDAHTLRTPDGAPVDTVSVEFVTFGAEDYLEKSDDELLIAFETMVKP FT MRVGQLLCPSFDKCLFISSIAMARALLLAPQTSNRPMKCFEDLVAAIYTKSDFYDDDDE FT CEADDVQMNISSRDVPGYSFEPWSRTSGSEPPPLCEACNMIMYQCPCFDFNALMKSCAE FT RTFADDYVIEGLDGVIDNATLLSNLGPFLVPVRCQYEKCPSLVIAIPPNLNRATDRVDI FT NLVQSICDSTLPTHSSYDGTFHQVFVDNADYSIDLDHVRFRQSDFIAKIPDSGHMIPVL FT NTGSGHKRVGTTKEVLTAIKKRNADVPELGHSVNLSRLSKAVAERFFISYINGNSLASS FT NFVNVVSNFHDYMEKWKSSGLSYEDLPDPHAENLQFYDHMIKSDVKPVVSDTLNIDRPV FT ASYYNVSSEDYNLPVLTLFTALFERFQRCLRERIILPVGKISSLEMAGFDVKNKHCLEI FT DLSKFDKSQGEFHLLIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRR FT TGDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSILPPVGDPSKFTTLFNME FT AKVMEPSVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYPDDDEFLFAHFMSFV FT DRLRFLDRMSQSCIDQLSFFFELKYKKSGEEAALMLGAFKKYTANFKSYQELYYSDRRQ FT CELINSFHGIELRIERSDSNKQRKRNGTERGRKDKRRAPAGSRGGEEETETEVSQEEST FT GTRIQKSQREGTFKSQTASLPTVLSGGCGRIHRASPPCEYGGIARV" FT CDS 2411..2743 FT /codon_start=1 FT /product="2b protein" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:Q20A31" FT /protein_id="ABD64219.1" FT /translation="MELNEGARTNVELQLAHVVEKKKQRRRSLKKNRRERGYKSPSERA FT RSNLRLLRFLPFYRADVVEFTGPHHHVSMVELLESECPWLSLSAEDFEFDDTDWFAGNE FT WAEGVF" XX SQ Sequence 3037 BP; 745 A; 678 C; 720 G; 894 T; 0 other; gtttatttac aagagcgtac ggttcaaccc ctgcctcccc tgtgaaactc cctggtttat 60 ccagttcttt tatctatggc ttttcctgcc cccacattct cacttgccaa tcttttgaat 120 ggcagttacg gtgttgacac tcccgaggat gtggagcgtt tgcgacgtga gcaacgcgaa 180 gaggctgctg cggctcgtcg aaattacgag cccctacccg ctgtggatgt cagcgagagt 240 gtcttagagg atgcgcatac cctccgaact ccagatggag ctcccgttga tacggtatct 300 gttgagtttg ttacttttgg tgcagaagat taccttgaaa aatctgacga tgagctcctg 360 atcgcttttg agacgatggt caaacccatg cgcgtcggac aattgttgtg cccttcgttt 420 gataaatgtc tttttatttc cagcatcgct atggccagag ctttgctgtt ggcaccacaa 480 acatccaacc gacccatgaa gtgttttgaa gacctggtcg cggctattta cactaaatct 540 gatttctatg atgacgatga tgagtgtgaa gccgacgacg tccagatgaa tatctcgtct 600 cgcgatgtac ccggttactc tttcgaaccg tggtcccgaa cgtctggatc tgaaccccct 660 ccgctttgcg aggcgtgtaa catgatcatg taccagtgcc cgtgttttga ttttaatgct 720 ctaatgaaat cgtgcgctga gaggaccttt gccgatgact atgttatcga aggtttagat 780 ggtgtcattg acaacgcgac tttattgtcc aatttaggcc catttttggt gcctgtgagg 840 tgtcaatatg aaaaatgccc atcactggtt attgcaattc ctccgaattt aaatcgtgcc 900 actgatcgtg ttgatatcaa tttggttcaa tccatttgtg actcgactct gcccactcat 960 agcagttacg acggcacttt tcatcaagtg ttcgttgata acgctgacta ttctatagat 1020 ctggatcatg tcagatttcg acaatctgac tttattgcaa aaattcctga ttctgggcat 1080 atgataccgg ttttaaatac cgggagcggt cacaagagag taggtacaac gaaggaggtt 1140 cttacggcta tcaagaagcg taatgccgac gttccagagc tgggtcattc cgttaatctg 1200 tctaggttga gtaaagctgt ggccgagaga tttttcattt catatattaa tggtaactct 1260 ctggcatcca gtaattttgt taacgtcgtc agtaacttcc acgattacat ggaaaaatgg 1320 aagtcatcag gtctctcgta tgaagatttg ccagatcctc atgccgagaa tttgcaattt 1380 tatgatcaca tgataaaatc tgatgtgaaa cctgttgtga gcgacacact caacatcgac 1440 agaccggttg ccagctacta taacgtatca tcagaagact ataacctccc agttctcacc 1500 ttattcacag cgctatttga gcgcttccag agatgccttc gagaacgcat tattcttcct 1560 gttggcaaga tttcatccct tgagatggcg ggatttgatg ttaaaaataa gcattgtctc 1620 gagattgatt tgtctaaatt cgacaagtct cagggtgaat ttcatctgct gattcaggag 1680 catattttga atggtctagg gtgcccagct ccgataacta aatggtggtg tgatttccac 1740 cggttttctt acatcagaga tcgtagagct ggtgttggta tgcctatcag tttccagaga 1800 cgtactggtg acgcgttcac ctattttggc aataccatcg tcaccatggc tgagttcgcc 1860 tggtgttacg acaccgacca atttgaaaaa ttgttattct cgggcgatga ttctctgggt 1920 ttttctatac ttccccctgt tggtgatccg agtaaattca caactctctt caacatggaa 1980 gccaaggtga tggaaccgtc agtaccatac atttgttcga agttcctact ctctgacgag 2040 ttcggtaata cattttccgt tccagatcca ttgcgcgagg ttcagcggtt gggtacaaag 2100 aaaattccct atcctgacga tgatgaattc ttgttcgctc attttatgag ttttgttgat 2160 cgattgaggt ttttggatcg aatgtctcaa tcatgtatcg atcaactttc tttcttcttt 2220 gagctgaaat acaagaagtc tggggaagag gctgccttaa tgttaggcgc ctttaagaaa 2280 tataccgcta atttcaaatc ctatcaagaa ctctattatt cagatcgtcg tcagtgcgaa 2340 ttgatcaatt cgtttcatgg tatagagttg aggattgagc gttcagattc caataaacaa 2400 cgaaagagaa atggaactga acgagggcgc aaggacaaac gtcgagctcc agctggctca 2460 cgtggtggag aagaagaaac agagacggag gtctctcaag aagaatcgac gggaacgagg 2520 atacaaaagt cccagcgaga gggcacgttc aaatctcaga ctgcttcgct tcctaccgtt 2580 ttatcgggcg gatgtggtag aattcacagg gcctcaccac catgtgagta tggtggaatt 2640 gctcgagtct gagtgcccct ggttatcgtt atcggcggag gatttcgaat tcgatgatac 2700 ggattggttc gccggtaacg aatgggcgga gggcgtgttt tgaacctccc ctccttttcc 2760 accctcactt ctgtgcgggt gctgagttgg cagtgctgct ttaaactgtc tgaagtcatt 2820 aaacgtttcg acgacggacg ggttgtccaa ccagcttacg gctaaaatgg tcagtcgtgg 2880 agaaatccac gccggaggtt tacaaacctc tgaggcgcct ttgaaaccga ctcctgggtt 2940 tcttcggaag gacttttgtc cgtgtacttc tagcacaaga tgctagtgta gggtacaggt 3000 gccccccact atttagtggg gctccaaaag gagacca 3037 //