ID DQ399548; SV 1; linear; genomic RNA; STD; VRL; 3336 BP. XX AC DQ399548; XX DT 11-MAR-2006 (Rel. 87, Created) DT 11-MAR-2006 (Rel. 87, Last updated, Version 1) XX DE Cucumber mosaic virus strain BX segment RNA1, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3336 RA Zhang H., Chen J.; RT "The complete nucleotide sequence of the genome RNA of a new Cucumber RT mosaic virus isolate from Pinellia ternata (Thunb.) in China"; RL Unpublished. XX RN [2] RP 1-3336 RA Zhang H., Chen J.; RT ; RL Submitted (12-FEB-2006) to the INSDC. RL Biological Science, Institute of Molecular Microbiology, Zhejiang RL University, Kaixuan Road 268#, Hangzhou, Zhejiang 310029, China XX DR MD5; af71b7dcaf9d7bc4cb428c6286da027f. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3336 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /host="Pinellia ternata" FT /strain="BX" FT /mol_type="genomic RNA" FT /country="China" FT /note="subgroup: I" FT /db_xref="taxon:12305" FT CDS 86..3067 FT /codon_start=1 FT /product="1a protein" FT /note="replicase" FT /db_xref="GOA:Q20A33" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q20A33" FT /protein_id="ABD64217.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGH FT KVYIRNVLNVKDSEIIRNRYGGKYDLHLTQQELAPHGLAGALRLCETLDCLDFFPRSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGFRDKMRHAERLMSMRKIILNDPQQFDGRQ FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTLLKGTMMFDGAMMFDDQ FT GVIPELKCQWRKIRSAFSETEDVTPLPGKINSTVFSRVRRFKTMIAFDFIDESTMSYVH FT DWENIKSFLTDQTYSYNGMTYGIERCVIYAGVMTYKIVGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILLSTLRETEEIAMRCYNEKKAWTEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNSSSISKWFASLTR FT PLRVFFSSVVRALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAFVATQ FT AVTDGKVLAAQKAEKLAEKLAHPVSEVSDSSETPSLASDDTADVCGKEQEVSELDSLPV FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNPLEGNLRFVFD FT TYFTVDPMVNVHFSTGRWMHPVPEGITYSVGYNERGLGPKSDGELYIVNSECVVCNSES FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACAFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGIHPKYMKW FT VSQSKVKRSVTSRAIASVTLVDLDPSRFYITMTQADKASLISRAKEMNLPKTFWNDRIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQSSYCLVALTRHKVTFRYEYSGVLNGDLIAAC FT ISRI" XX SQ Sequence 3336 BP; 839 A; 740 C; 807 G; 950 T; 0 other; gtttatttac aagagcgtac ggttcaaccc ctgcctcccc tgtgaaatta ccctttgaaa 60 aacctctctt ttctctgtaa ttcctatggc aacgtcctcg ttcaacatca atgaactggt 120 agcctcccac ggcgataaag gactgcttgc gacagccctc gttgataaga cagctcatga 180 gcagctggag gagcaattac aacatcaacg tagaggccat aaggtctaca ttcgtaatgt 240 actgaatgta aaggattccg aaatcattcg gaatcgatat ggagggaagt acgacctcca 300 tcttacccag caggagttag ctccccacgg cctagctggt gccctccgct tgtgtgaaac 360 tctcgattgt ctagactttt tccctcgctc aggtctgcgg caagacctcg tcttagactt 420 cggaggaagt tgggtcacac actaccttcg cggacataac gtacactgtt gctccccttg 480 tttgggtttc cgcgataaga tgcgccacgc ggaacgttta atgagcatgc gcaagatcat 540 cttgaacgat ccacaacagt tcgatggtcg gcagccggat ttctgcactc atcctgctgc 600 ggattgcaaa gttcaagccc actttgctat atccattcac ggagggtatg acatgggctt 660 tagaggatta tgtgaggcga tgaatgccca cggaaccact ttacttaagg gaacgatgat 720 gttcgatggt gcgatgatgt ttgacgacca gggtgttata cccgaactta agtgccagtg 780 gaggaagatt aggagtgctt tctccgaaac tgaagacgtc acaccgttgc ctggtaagat 840 taattccact gtattctccc gcgttcgtag gtttaagacc atgatagctt tcgatttcat 900 cgatgagtct accatgtctt atgttcatga ttgggagaat ataaaatctt ttcttacaga 960 ccagacatat tcttataatg ggatgactta cggcatcgaa cgctgtgtca tctatgccgg 1020 tgttatgacg tacaagattg ttggtgtacc tgggatgtgt ccacccgaac tcattcgaca 1080 ttgtatttgg ttcccctcta tcaaagacta tgttggtcta aaaattcccg cgtctcagga 1140 cttggttgag tggaagacag tgcgcatttt attgtcaaca ttacgtgaga ctgaagagat 1200 tgctatgagg tgttacaatg aaaagaaggc ttggacggag caattcaagg ttatcttagg 1260 tgttctatcc gccaagtcat ctaccattgt tattaatggt atgtccatgc aatctggcga 1320 gcggatagat atcaatgatt atcattacat tgggttcgcc attcttcttc acacaaaaat 1380 gaaatatgaa cagctgggaa aaatgtacga tatgtggaat tcttcgagca tctcgaagtg 1440 gtttgcttcg ttgactcgtc cacttcgagt gtttttttcc agcgtggttc gcgcattgtt 1500 cccgactttg agaccgcgcg aggaaaagga atttttaatc aagctctcca ccttcgttac 1560 ttttaatgaa gagtgctcat tcgatggtgg agaggaatgg gacgtgatat catctgctgc 1620 atttgttgca acgcaggctg ttaccgatgg gaaagttttg gctgcacaaa aagccgagaa 1680 gcttgctgaa aagcttgcac atcccgtaag tgaggtatcg gacagctctg agacgccatc 1740 tttagcgtcg gacgatactg ctgatgtttg tggaaaggag caagaagttt cggaacttga 1800 ctccttgcca gttcagacac gttcccccat cactagagtt gctgagaggg ctactgccat 1860 gttggagtat gccgcttatg agaaacagtt gcatgacact acagtgtcta acttaaaacg 1920 tatatggaac atggcgggtg gtgatgataa aagaaatcct cttgaaggca atctgaggtt 1980 tgtatttgac acgtatttca ccgttgatcc catggtgaat gttcatttct ccacgggccg 2040 gtggatgcat ccagtgccag agggaattac ttactccgtc ggttacaacg aacgtggtct 2100 tggtccaaag tcggacgggg agctttatat tgtcaatagc gaatgtgttg tctgtaacag 2160 tgagtctttg tccactgtta cacgttcact ccaagctccg accgggacca ttagtcaagt 2220 tgacggagtt gctggttgcg ggaaaaccac ggcgatcaaa tctatatttg aaccgtctac 2280 cgacatgatt gtcaccgcta ataagaaatc cgctcaagat gtacgtatgg cactttttaa 2340 atcgtcagat tccaaagaag cgtgcgcttt cgtccgaaca gctgattctg tcctacttaa 2400 cgaatgtccg accgttagta gggttttagt tgatgaggtc gtgttgctac actttggtca 2460 attgtgtgcc gtcatgtcta aactgaaggc agtgagagct atatgttttg gagattcgga 2520 gcaaattgcc ttttcttctc gagatgcctc gtttgacatg cgtttctcta agattattcc 2580 agatgagact agtgatgcgg acactacatt ccgtagccca caagatgttg tgcctcttgt 2640 gcgtttaatg gctacgaagg cccttccgaa aggaattcat cctaaataca tgaagtgggt 2700 ttctcaatct aaagtgaaaa ggtctgtcac gtctcgcgct atagctagcg tgacactggt 2760 tgatttggac ccttctaggt tctacatcac gatgacccaa gccgataagg cttcactgat 2820 ttcgagggca aaagagatga acttaccaaa gactttctgg aatgacagaa ttaaaaccgt 2880 gcatgagtct cagggtattt ctgaagacca cgttactttg gtaagattaa agagcacaaa 2940 atgtgacctg tttaaacagt cttcttattg tcttgttgct ttgactagac acaaggtcac 3000 attccgctac gaatactccg gtgttttgaa tggcgatttg atcgccgcat gtatttctcg 3060 tatttagcgg cttccctcct tcgggcggga cctgagtcgg cggtaatcta caaaccgtct 3120 gaagtcacta ttgtgaacgg gttggtcatc cagctaacgg ctaaaatgat cagtcgcgtc 3180 ttctgacgcg ccggaggttt acaaacctct gaggcacctt tgaaaccatc tcctaggttt 3240 cttcggaagg acttcggtcc gtgtacttct ggcacaatgt gctagtgtag ggtacgggtg 3300 ccccccacta gttagtgggg ctccaaaagg agacca 3336 //