ID DQ395343; SV 2; linear; genomic DNA; STD; VRL; 2622 BP. XX AC DQ395343; XX DT 06-MAR-2006 (Rel. 87, Created) DT 09-JUN-2007 (Rel. 92, Last updated, Version 4) XX DE Wissadula golden mosaic St Thomas Virus, complete sequence. XX KW . XX OS Wissadula golden mosaic St Thomas Virus OC Viruses; Geminiviridae; Begomovirus; Wissadula golden mosaic virus. XX RN [1] RP 1-2622 RX DOI; 10.1111/j.1365-3059.2007.01514.x. RX AGRICOLA; IND43887809. RA Collins A.M., Roye M.E.; RT "Two new bipartite begomoviruses infecting Wissadula amplissima in RT Jamaica"; RL Plant Pathol. 56(2):340-340(2007). XX RN [2] RP 1-2622 RA Collins A.M., Roye M.E.; RT ; RL Submitted (08-FEB-2006) to the INSDC. RL Biotechnology Centre, University of the West Indies, Mona, 2 St. John's RL Close, Kingston, Jamaica XX RN [3] RC Sequence update by submitter RP 1-2622 RA Collins A.M., Roye M.E.; RT ; RL Submitted (06-JUN-2007) to the INSDC. RL Biotechnology Centre, University of the West Indies, Mona, 2 St. John's RL Close, Kingston, Jamaica XX DR MD5; 6945b35a9fc8bcd26355befccb204aac. XX CC On Jun 6, 2007 this sequence version replaced gi:88953886. XX FH Key Location/Qualifiers FH FT source 1..2622 FT /organism="Wissadula golden mosaic St Thomas Virus" FT /segment="DNA-A" FT /host="Wissadula amplissima" FT /mol_type="genomic DNA" FT /country="Jamaica:St. Thomas parish" FT /db_xref="taxon:373593" FT gene 184..939 FT /gene="CP" FT CDS 184..939 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q27J77" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q27J77" FT /protein_id="ABD58993.2" FT /translation="MSKRDGSWRSIAGTAKVRRILNFSPRGGGGLKPTRAQEWVNRPMY FT RKPKIYRTLRTPDIPRGCEGPCKVQSYEQRQDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHRFYGKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHAFNPVYATLKIRIYFYDSVMN" FT CDS complement(936..1334) FT /codon_start=1 FT /product="REn" FT /db_xref="GOA:A5X2T7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A5X2T7" FT /protein_id="ABQ97015.1" FT /translation="MDSRTGELITAPQAGNGVYIWEIENPLYFKIYRVEDPLYTRTRVY FT HIQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLLRFMHLVNMYLDQLGVISINN FT VIRAVRFATARSYVSHVLENHSINFKIY" FT CDS complement(1081..1470) FT /codon_start=1 FT /product="TrAP" FT /db_xref="GOA:A5X2T8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5X2T8" FT /protein_id="ABQ97014.1" FT /translation="MRSSSPSQPPSIKKAHRQAKRRAIRRRRIDIECGCSIYFHIGCTG FT HGFTHRGTHHCTSGGEWRVYLGDRKSPVFQDIQSRGPAIHQNKGIPHPDTVQPQPEESV FT ASPQSIPELPSLDDIDDSFWVNLFT" FT gene complement(1382..2467) FT /gene="Rep" FT CDS complement(1382..2467) FT /codon_start=1 FT /gene="Rep" FT /product="replication initiator" FT /db_xref="GOA:Q27J78" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q27J78" FT /protein_id="ABD58994.2" FT /translation="MPSAKRFKVSAKNYFITYPQCSLTKEETLSQLQQLTTPVNKKFIK FT ICRELHENGEPHLHVLIQFEGKYQCTNYRFFDLVSSTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQSVNDTYAKALNAGSAEAALQIIKEEQPQHFFLQHH FT NLTNNATKIFAKAPEPWAPPFPLSSFTNVPDEMIEWADEYFGRGSAARPQRPVSLIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNSRVFSNEMEYNVIDDVAPHYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKEFLDKEENASLRNWTLKNAIFITLT FT APLYQEGTQAGQEEGHQEETH" FT CDS complement(2053..2316) FT /codon_start=1 FT /gene="Rep" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5X2T9" FT /protein_id="ABQ97016.1" FT /translation="MKMGSLISTSSSSSRASTSARITDSSIWFPQPGQHISIQTFRELN FT PAPTSSPTSTRTEIHWNGESSRSTADLLEEASNLLTIHMPRR" XX SQ Sequence 2622 BP; 621 A; 599 C; 652 G; 750 T; 0 other; accggatggc cgcgtgcccc cccccttttg ccgtactatc acgcgcgctc cccttttcct 60 cactcgcgct ctcgtccaat catattgcgt ctgccgcgcc taattatttt gaacaacttg 120 ggccctaagt tgttgaatgg tctataaatg aaaagctgat tggcccacgt actttaactc 180 aaaatgtcta agcgcgatgg ctcctggcgc tcgatcgcgg gaaccgccaa ggttaggcgc 240 attttgaatt tctcccctcg tggaggtggt ggtttaaaac cgaccagggc ccaggaatgg 300 gttaacaggc ctatgtacag gaagcccaag atataccgga cgctgagaac ccccgacatc 360 ccaagaggat gtgaaggccc atgcaaggtg cagtcctatg aacagcgcca ggatatctct 420 cacgtgggta aggtcatgtg tatatccgat gtcacacgtg gtaacggcat tacccaccgt 480 gtgggtaagc gtttttgtgt taagtctgtg tatattttag gtaagatatg gatggacgag 540 aacatcaagc tgaagaacca tacgaacagt gttatgttct ggttggtcag ggaccgtcga 600 ccgtatggca cgcctatgga tttcggccag gtgttcaaca tgttcgacaa cgagcccagc 660 actgccacgg ttaagaacga tctccgggat cgttaccagg ttatgcaccg attctatggg 720 aaggtgacag gtggacagta tgccagcaac gagcaggcta ttgtcaggcg gttctggaag 780 gtcaataacc atgtggtcta caaccaccag gaggctggca aatacgagaa ccacacggag 840 aacgctctgt tattgtatat ggcatgtaca catgccttta atcctgtgta tgcaactctg 900 aagattcgaa tctattttta tgattcggtc atgaattaat aaattttaaa atttattgaa 960 tgattctcca gtacatgact cacatacgat ctggctgttg caaaacgaac agctctaatt 1020 acattgttaa tggaaataac gcctaactga tctaagtaca tgttgactaa gtgcataaac 1080 ctaagtaaat aagttgaccc agaagctgtc atcgatgtcg tccagacttg gaagttcagg 1140 tatgctttgt ggagatgcaa cgctctcctc aggttgtggt tgaaccgtat ctggatgtgg 1200 tatacccttg ttctggtgta tagcgggtcc tctactctgt atatcttgaa atacagggga 1260 ttttcgatct cccagatata cacgccattc cccgcctgag gtgcagtgat gagttccccg 1320 gtgcgtgaat ccatgtcccg tgcagcctat gtggaagtag atggagcacc cgcactctat 1380 atcaatgcgt ctcctcctga tggccctcct cttggcctgc ctgtgtgcct tcttgataga 1440 ggggggctgt gagggtgatg aagatcgcat tcttgagagt ccagttcctg agggatgcat 1500 tttcctcctt gtccaggaac tctttatagc tggcaccctc accaggattg catagcacga 1560 ttgctgggat ccctccttta atttgaactg gcttgccgta tttgcaattg gactgccagt 1620 ctttttgggc ccccagcaac tctttccagt gctttagttt tagatagtgc ggtgcgacgt 1680 catcaatgac gttatactcc atttcgtttg agaagacccg ggaattgaag tctaagtgtc 1740 cactcaggta gttatgtggg cctaacgctc gagcccacat tgtcttccct gtcctcgaat 1800 caccttcgac tatgagactt actggtctct gtggccgcgc agcggaacct cttccaaaat 1860 attcatctgc ccattcaatc atctcgtccg gaacgttagt gaaagaggag agtggaaacg 1920 gaggagccca aggttccgga gcctttgcga atattttggt agcgttatta gtcaggttgt 1980 gatgttgaag gaagaaatgt tgtggttgtt cttcctttat tatttgcaga gcagcctctg 2040 ctgagcctgc atttaacgcc ttggcatatg tatcgttaac agattgctgg cctcctctag 2100 cagatctgcc gtcgatctgg aactctcccc attccagtgt atctccgtcc ttgtcgatgt 2160 aggacttgac gtcggagctg gatttagctc cctgaatgtt tggatggaaa tgtgctgacc 2220 gggttgagga aaccagatcg aagaatctgt aattcgtgca ctggtacttg ccctcgaact 2280 ggatgaggac gtggagatga ggctccccat tttcatgaag ttctctgcag atcttgatga 2340 acttcttgtt aactggagtt gttagttgtt gtaattggga aagtgtctcc tctttggtaa 2400 gagagcattg gggatatgtg atgaaataat ttttggctga gactttaaaa cgtttagctg 2460 atggcatttt tgtaaaaaag aggtgtaccc cagatgagtt accccgattg atctctccaa 2520 cttctgtgct atgtattggg gtatggggta ttatatatac tagaaccctc aataggactt 2580 tggatctcgt tcacacacgt ggcggccatc cgatataata tt 2622 //