ID DQ392986; SV 1; linear; genomic RNA; STD; VRL; 3910 BP. XX AC DQ392986; XX DT 02-MAR-2006 (Rel. 87, Created) DT 02-MAR-2006 (Rel. 87, Last updated, Version 1) XX DE Hibiscus chlorotic ringspot virus isolate TW, complete genome. XX KW . XX OS Hibiscus chlorotic ringspot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betacarmovirus. XX RN [1] RP 1-3910 RA Li S.-C., Chang Y.-C.; RT "Study and cloning of a Taiwan isolate of Hibiscus chlorotic ringspot RT virus"; RL Unpublished. XX RN [2] RP 1-3910 RA Li S.-C., Chang Y.-C.; RT ; RL Submitted (07-FEB-2006) to the INSDC. RL Department of Plant Pathology and Microbiology, National Taiwan University, RL 1, Section 4, Roosevelt Road, Taipei, Taiwan 10617, R.O.C. XX DR MD5; 796401610a03f1960a28360c509081b5. DR EuropePMC; PMC3861435; 24336382. XX FH Key Location/Qualifiers FH FT source 1..3910 FT /organism="Hibiscus chlorotic ringspot virus" FT /host="Hibiscus rosa-sinensis" FT /isolate="TW" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /db_xref="taxon:53181" FT CDS 31..2238 FT /codon_start=1 FT /transl_except=(pos:673..675,aa:OTHER) FT /product="p81 protein" FT /note="putative RdRp" FT /db_xref="GOA:Q27K42" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q27K42" FT /protein_id="ABD48708.1" FT /translation="MFSHVFSLAYETVSLSAALCVATLAAAYEIVTHPRIAPRDPCIAE FT ELCMRDELEVNEPSDEDAEACLEALPSSAGDKKVLKVKRKHRGKFALHAAIAAKLHFGG FT TPTPTRSNELAVRRWLASYCKERRLVDTHAVQAIALATPLVLTPGAAEITERAILNSPV FT FGMRRAALAEASKPSSLKYQMVFEAHRARTWLRAWRKLVGLPDFQGYTTMKXGCLREIA FT GVDTQIVRGEHQAMAVFPREGFSKPRRIFHVCGMGNGTTFGVHNNSLANLRRGLVERVF FT YVEDASKNLVPTPRPLPGKFQELKYLARRVARIAGHHTPIPRESYPGLYKGRRFQIYAG FT AVESLASNPIHRRDSFLKTFVKAEKINFSAKPDPAPRVIQPRDPRYNVEVGRYLKPYEH FT HLYRALDVVWKGPTVLKGYTVSEIGNIMHLHWSQFQKPCAVGFDMKRFDQHVSVDALRF FT EHSVYGRSFCSKELDRLLEWQLLNSGVGHANDGYIRYKVDGCRMSGDVNTAMGNCLLAC FT LITKHLLKGIRCRLINNGDDCVLFFDAPDLAAVTERLAHWLDFGFQCVVEAPVYELEQV FT EFCQMKPVFDGQEWICVRNVHVSVAKDTYSINPWNNVADAGRWIRAIGECGESLTGGIP FT VLNAYYGVFKRAYGAAGKVKESLAFDSGMYRLSQRCSRVFHEPTEEARVSFYKAFGVDP FT LAQVAIESFYDEMEIELEFTPEGKPDDISLQWLLRNRTPNS" FT CDS 31..675 FT /codon_start=1 FT /product="p28 protein" FT /note="putative RdRp subunit" FT /db_xref="UniProtKB/TrEMBL:Q27K41" FT /protein_id="ABD48707.1" FT /translation="MFSHVFSLAYETVSLSAALCVATLAAAYEIVTHPRIAPRDPCIAE FT ELCMRDELEVNEPSDEDAEACLEALPSSAGDKKVLKVKRKHRGKFALHAAIAAKLHFGG FT TPTPTRSNELAVRRWLASYCKERRLVDTHAVQAIALATPLVLTPGAAEITERAILNSPV FT FGMRRAALAEASKPSSLKYQMVFEAHRARTWLRAWRKLVGLPDFQGYTTMK" FT CDS 41..670 FT /codon_start=1 FT /product="p23 protein" FT /note="putative protein" FT /db_xref="UniProtKB/TrEMBL:Q27K40" FT /protein_id="ABD48709.1" FT /translation="MSFHSLMKLFLSVRHCVSQPLQLLMKLLRTPVSLPATPALLKSCA FT CVMSSRLMSPLMRTLRLVWKLFPLLQAIRKCSKLRGSTGVSLRSMLPSQLSSTLGVLQP FT QRALTSLQCGGGLRAIARKGGWLTHTLYKRSLWPLLWYLRQGPLKSLSERSLIVLCLEC FT GGRLWPKLRSRAASNIKWCLRLIGRERGSGPGGSWWVSLIFRGTPP" FT CDS 2205..2417 FT /codon_start=1 FT /product="p8 protein" FT /note="putative movement protein" FT /db_xref="GOA:Q27K39" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q27K39" FT /protein_id="ABD48710.1" FT /translation="MASTQPNTEFIEINPHDTSLQKGAGKGNRQAKKEVALQAVHKANK FT QDEAISGGSFVFVADKVEVTININF" FT CDS 2344..2580 FT /codon_start=1 FT /product="p9 protein" FT /note="putative movement protein" FT /db_xref="GOA:Q27K38" FT /db_xref="UniProtKB/TrEMBL:Q27K38" FT /protein_id="ABD48711.1" FT /translation="MRLFLGVLSFLLLIKLRLLSTSTFEVDWRTLRENLLIISTLSLFG FT FFVTVLIKAESEHIHFHSHDSSKTQNIVVNTGK" FT CDS 2590..3627 FT /codon_start=1 FT /product="capsid protein" FT /note="p38 protein" FT /db_xref="GOA:Q27K37" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q27K37" FT /protein_id="ABD48712.1" FT /translation="MLQKNDPAVQRAYNAHLPWAIKLKNDGWAALSKGQKRAANRYAGG FT TRPVTSQVKLSTLKVTAPVAASLRTRNPGANIRTAGKSVTVVHCEFVGNVARQTGSGLL FT VVERTINPSNVLSFPWLSVLAAGYEKYRVSSLSLRYSPTCATTTEGKVILAFDKDAADA FT SPTSKSDMYNHDGAVGVSPWDSAMLQVPCDTVDRFINDSSSSDPKLVDFGKVVVANYGQ FT SEGDVDVIGELFLQYSITLKIPQGTATLTQSGVGITSTGPSLFRVQLSESTYVFTCNGT FT GRFLFFFNSTVDATSTISGMEVKQKSSTDDKGETTILELLATESGGKIAILADKGTITW FT WACRN" FT CDS 2603..3277 FT /codon_start=1 FT /product="p25 protein" FT /note="putative protein" FT /db_xref="GOA:Q27K36" FT /db_xref="UniProtKB/TrEMBL:Q27K36" FT /protein_id="ABD48713.1" FT /translation="MTQPFSARIMPIYLGQSNSRTMGGLLFLRVRKEQPIDTRVEPVLL FT LLKLSCQHLKLRLQWPPRCGHATLERTLGRLENRSPSSIASLWAMSPGRLVVGYWWLRG FT QSIPATYSASPGFLYSLPDTRSTACHHCLLDILQLVPQPRRARSSWRLIKTLQMLPPPP FT RATCITMMEQLESRPGTVQCCKYLVILWIGLLMIPVVPTLSLLTLVRWLLPIMANLKGM FT WM" XX SQ Sequence 3910 BP; 952 A; 912 C; 1030 G; 1016 T; 0 other; gggaaaccgt ggcaagtttc cgaatcatct atgttctccc atgtcttttc actcgcttat 60 gaaactgttt ctctcagtgc ggcactgtgt gtcgcaaccc ttgcagctgc ttatgaaatt 120 gttacgcacc cccgtatcgc tccccgcgac ccctgcattg ctgaagagtt gtgcatgcgt 180 gatgagctcg aggttaatga gccctctgat gaggacgctg aggcttgtct ggaagctctt 240 ccctcttctg caggcgataa gaaagtgctc aaagttaaga ggaagcacag gggtaagttt 300 gcgctccatg ctgccatcgc agctaagctc cactttgggg gtactccaac cccaacgcgc 360 tctaacgagc ttgcagtgcg gaggtggctt gcgagctatt gcaaggaaag gaggctggtt 420 gacacacacg ctgtacaagc gatcgctctg gccactcctc tggtacttac gccaggggcc 480 gctgaaatca ctgagcgagc gatccttaat agtcctgtgt ttggaatgcg gagggcggct 540 ctggccgaag cttcgaagcc gagcagcctc aaatatcaaa tggtgtttga ggctcatcgg 600 gcgagaacgt ggctcagggc ctggcggaag ttggtgggtc tccctgattt tcaggggtac 660 accaccatga aataggggtg ccttagggaa atagctggtg tggacactca aattgtccgt 720 ggagagcacc aggctatggc cgtattccct agggaaggat tctccaaacc ccggcgcatc 780 ttccatgtct gtggaatggg taatgggacc accttcggag ttcacaacaa ttctcttgct 840 aatttacggc gggggcttgt tgagagggtg ttctacgtcg aagatgccag caaaaatcta 900 gtcccaaccc ctcggcccct acctggtaaa ttccaggagt tgaagtatct ggcacgacgc 960 gtcgcgcgca ttgctggaca tcatacccct atccccaggg aaagttatcc tgggttgtat 1020 aagggcagga ggttccaaat ttatgcgggc gcggtcgaga gtttagcttc caatcctatt 1080 cataggaggg attcctttct caagactttc gtgaaagccg aaaagatcaa cttttcggcg 1140 aaaccagacc ctgctcctag agttatccag cctagggatc cgagatataa tgtagaggta 1200 ggtagatatc ttaagcccta cgagcaccat ctatatagag ctctagatgt tgtttggaaa 1260 gggcccactg tgcttaaggg atatactgtt agcgaaatag ggaatattat gcatttacac 1320 tggtcacaat tccagaaacc atgtgctgtt ggatttgaca tgaagagatt tgatcagcac 1380 gtttctgtgg atgcgctgcg atttgaacat tctgtgtacg gaaggagttt ttgctcaaaa 1440 gagcttgaca gattgttgga atggcagctc ctcaactctg gggttggaca tgcaaatgac 1500 gggtacatta ggtacaaggt tgatggatgt aggatgagtg gagacgtgaa cactgcaatg 1560 ggcaattgtc tcctcgcctg cttgattacc aaacacctcc tgaagggcat cagatgtaga 1620 ctcatcaata atggtgatga ctgtgtcctc ttcttcgacg ctccagatct agctgcggtc 1680 actgaacggt tggctcactg gcttgatttt ggattccagt gcgtggttga ggctccagtt 1740 tatgagctag aacaggttga gttttgtcag atgaaaccag tgtttgatgg gcaggagtgg 1800 atatgtgtta ggaatgttca cgtctcggta gcgaaggata cttactctat caatccttgg 1860 aacaatgtgg ctgatgctgg taggtggatc agagccattg gggaatgcgg tgagtctctc 1920 accgggggca tcccagtgct aaatgcatat tatggtgtgt ttaagagagc ttatggtgcc 1980 gcggggaaag taaaggagag tttggcattt gattctggaa tgtatagact ctcccaaagg 2040 tgttctaggg tgtttcatga acccactgaa gaagctagag tgagtttcta caaggctttt 2100 ggggtggatc ccctggctca agttgcaatt gaatcattct atgatgagat ggaaattgag 2160 ttggaattca ccccggaggg aaagcctgat gatatctcac tccaatggct tctacgcaac 2220 cgaacaccga attcatagag atcaatcccc acgacaccag cttacagaag ggcgcaggca 2280 agggaaatag acaggctaag aaagaagtag cactccaagc agtgcacaag gccaacaagc 2340 aggatgaggc tatttctggg ggttctttcg tttttgttgc tgataaagtt gaggttacta 2400 tcaacatcaa cttttgaggt tgactggaga accctccggg aaaacttact catcatttca 2460 acgcttagtc tgtttgggtt ttttgtcact gtcctgatca aggctgagtc agaacacatc 2520 catttccatt cgcacgacag tagtaagaca cagaacatag tagtaaatac tggcaagtga 2580 cctatcgaca tgctgcagaa gaatgaccca gccgttcagc gcgcgtataa tgcccattta 2640 ccttgggcaa tcaaactcaa gaacgatggg tgggctgctc tttctaaggg tcagaaaaga 2700 gcagccaatc gatacgcggg tggaacccgt cctgttactt ctcaagttaa gctgtcaaca 2760 cttaaagtta cggctccagt ggccgcctcg ttgcggacac gcaaccctgg agcgaacatt 2820 aggacggctg gaaaatcggt caccgtcgtc cattgcgagt ttgtgggcaa tgtcgcccgg 2880 cagactggta gtgggctact ggtggttgag aggacaatca atcccagcaa cgtactcagc 2940 ttcccctggc tttctgtact cgctgccgga tacgagaagt accgcgtgtc atcactgtct 3000 cttagatatt ctccaacttg tgccacaacc acggagggca aggtcatctt ggcgtttgat 3060 aaagacgctg cagatgcttc ccccacctcc aagagcgaca tgtataacca tgatggagca 3120 gttggagtct cgccctggga cagtgcaatg ctgcaagtac cttgtgatac tgtggatagg 3180 tttattaatg attccagtag ttccgaccct aagcttgttg actttggtaa ggtggttgtt 3240 gccaattatg gccaatctga aggggatgtg gatgtgattg gggagctatt cctgcaatac 3300 tcgatcaccc tcaagatccc ccagggtaca gcgacactca cacagtccgg cgtgggaatc 3360 acatcaactg ggccctccct cttccgggtt cagctgagtg aaagcaccta tgtgttcacc 3420 tgcaacggta ctggtcgctt cctgttcttc ttcaactcta ctgttgatgc aacctccacc 3480 atttctggta tggaggtgaa gcaaaagagt tcaaccgatg acaaaggaga gacaacgata 3540 ttggaactac tcgctactga atcaggtggt aagatagcaa tattggcgga taagggcacc 3600 atcacttggt gggcctgcag gaactaggtt tatctattat tgggccttcg tgttgttagg 3660 ggcagtggaa gcgtcggtct agccagccgt cccctgggta gtgtgctctg tctatgtaca 3720 ccactactcg gctttcacaa acaaccggac tcccatacta tgtaaattat gttgattgct 3780 tcttcttccc ccttttaata tctcctctca tctcctctac acttggaact cataaaatcc 3840 ttcgggtggg cttgagtttc gggtactatt tgaaatcccc tccacaaccg ccatagttgt 3900 gaggcagccc 3910 //