ID DQ388879; SV 1; linear; genomic RNA; STD; VRL; 7808 BP. XX AC DQ388879; XX DT 03-JAN-2007 (Rel. 90, Created) DT 12-OCT-2009 (Rel. 102, Last updated, Version 6) XX DE Tomato torrado virus segment RNA1, complete sequence. XX KW . XX OS Tomato torrado virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Torradovirus. XX RN [1] RP 1-7808 RA Van den Heuvel J.F.J.M., Maris P.C., Verbeek M., Dullemans A.M., RA Van der Vlugt R.A.A.; RT "Plant virus designated Tomato torrado virus"; RL Unpublished. XX RN [2] RP 1-7808 RX DOI; 10.1007/s00705-006-0917-6. RX PUBMED; 17226066. RA Verbeek M., Dullemans A.M., van den Heuvel J.F., Maris P.C., RA van der Vlugt R.A.; RT "Identification and characterisation of tomato torrado virus, a new plant RT picorna-like virus from tomato"; RL Arch. Virol. 152(5):881-890(2007). XX RN [3] RP 1-7808 RA Verbeek M., Dullemans A.M., Van der Vlugt R.A.A.; RT ; RL Submitted (06-FEB-2006) to the INSDC. RL Biointeractions and Plant Health, Plant Research International, P.O. Box RL 69, Wageningen NL-6700AB, The Netherlands XX DR MD5; 17ea403ffc7e93002dbf24478e8a53fe. DR EuropePMC; PMC2861173; 20229114. DR EuropePMC; PMC2880234; 20376682. XX FH Key Location/Qualifiers FH FT source 1..7808 FT /organism="Tomato torrado virus" FT /segment="RNA1" FT /lab_host="N.glutinosa and N.benthamiana" FT /isolate="PRI-ToTV0301" FT /mol_type="genomic RNA" FT /country="Spain" FT /collection_date="2003" FT /db_xref="taxon:370833" FT /culture_collection="DSM:16999" FT 5'UTR 1..106 FT CDS 107..6583 FT /codon_start=1 FT /product="polyprotein" FT /note="Orf1" FT /db_xref="GOA:A1XIP9" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/Swiss-Prot:A1XIP9" FT /protein_id="ABD38934.1" FT /translation="MSFSKMFPGFNSVTEKCATSSSGSFFSELTASISNFSRTLSNVTK FT VSSQISSHIEDLKPSVTDAASSFTSTCNSVTKLLDKIMTLIEPFIKAYSFVASMYKSIC FT DMVAKIVASIKDKFTLGFNWVLDKSEDVDVLVIAFLIFAISMLIIVFICPSSVLDGVVQ FT MTHIVFNTVGNFFSALYKLDWLPTWSQKFSMMAQANVLPGESMSHSPLSQVVASLIAFG FT ISTLVFVAVPGRPNGLSNPLSKILYSAGSGAQQCNQLFTLFRNMKDCTSQAFSWVLEII FT VDIFGFKNPVLSAISATLSTDLFTWMEEVDAVCDPAHRLENFANPAFTIKLQHLREQAL FT KISAYIATHPVAAFMSHRVTAAIXHLDKIYGENCQHTGVGQYRAEPFMVQWYGASGCGK FT STSMRLFINDVLDRMEEPKLNRLYAVSKRDAYWSNYAHQTAILMDDMGALRDGAGQCQD FT IKDLIDIKSTQPAPLPMAAVEDKGRHFTSRYIFATSNLISAPAQCGLTYPDAFERRRDV FT LVECRKVGEFNTDAPTSHLEFDVVESKRPHAITHRGLSYDDLLEYVVAKCKVHAEISGK FT LYGATSGKVAQVDVSPEEIIASMDMLNIQDTKQDAKLPVVVVSEEDRVAYSQELTVEAL FT KYAYQGSLNPAAYFPHDMHKQAIFDVLSESAKETFTRWVNDMLYQGCCNENYRWLIKNI FT PADYIMHFKSFIYASTINERSFDVQKQLPDGMAHRAIDADVDTLICVEQMPAHVQFLYT FT AFVRYWCRRKMEQPRQSWVVVCYHSIVDYIKNAWYDLPYILRVLIKAGLILIALNGAFG FT AVTAFCACWQSNTFPSAEGRGGITNESNSISSRKNKGKSIFARSLLAQAKGDMLEKWAS FT DDGFINEGLKKNLVVLRLGEGVYFRGTYVCSGWVMTVAHAFSSLRDGTTFSIIHAQSIS FT KVQYNAKTARFLKEQDIVLLNVGNPDGPKPDIRKHFPVRDGVCFSKGTQGVCVRAVASK FT DASQGNLEYLRFNVMMSKGYLEKVTYQMDSSSFKLESQASYEYHMNGENGDCGTLLLLP FT NVQDKQPCIVGIHCASYDEEAAHKGFVASNATAIFRDQLEDLPTGPVKVAMVRCQLLKD FT LRARDAALFEEKQVAFVGTLPAEQAATVPHKTTLRRSGLFEAFGPAETAPSIISASDKR FT GEGFDPYVAGIQKYNETAQNFDEDIARLAYEGLRQAILPVLHSQRVPFGKPVTQNEDVV FT LNGVDGFDYFDGMELSTSCGYPYNKLGMGTSKREFVEPSGDGDRVQLKRTTPIFDDWEA FT LDVEIRKGNFVELVTTQCAKDERLPLEKVFGKRKTRLFEILPFHYNMLVRKYFLDFSAS FT LMASHNALPCKVGINPGGIEWTLLANGFRAVSDTGFSADYSSFDGRAPIFAFQWFCDLV FT DDYYGSPPGSPDSNARHVLLMMASCHYTICENKVFRLVGGMPSGFALTVIFNSLLNEFY FT MRYAFISLLRRPHIAAQAIGCKPSDFNKLFVAVYGDDNLVAVPMELHWYTLPAIAQELE FT MVNVIIKNGIDKNMDVSSSKMLDLSELTFLSRGFKRHRLGYVQAPLKWVSIIEPMYWIR FT PSVGCPDALAMLENIDTGVREAFHHGPQVFEKLVTDVQNALKERCFPATTFPTYFELEQ FT DWLVEVTGNPAIGLIKELHIAASAFVPLPPGNTVLNFSDGVHTFADRVSFCSSRTAAAQ FT QWDTTTVLVNCTGAKRPTWVRGPTTWRDFEGLIWPYTMAAIKDHICSIVTKGVTKPHVV FT FVCGNGYAIGPVCAALYCLSTGQYSSQDVVVRLRTIADVTDLSQYPGGCAKYLLKCADT FT REEELADTCKIAQAKGETPAYIPQGGFSLGNFRIVQGRIDLQLAQRLPFTVGPYGGWGQ FT HTTRELKLLLKDMEKIYQILVQRESFITLYFDYLSSEQVMLLVDFLRLQGFFPRQNDVD FT YLLKAFKLSKQRHNKENCHTVYFRKPFLSRKMTMGSKEILSATAAESLFGMDVSANVLK FT SRLLHLQKPIKCSSMELAFKIYCVIQGHLSKEVVTHFQRMYQQDLTEGIIEKVILWLTA FT TLSESFPVDLVDVPLGLDNIEIQDKGFSLNPNNINMNACDAILFQLTECYNRSTKKHVF FT CRYTTASSLVVAYVLAHRHQTIDELPSFYATHPDVLLLTPILTGYKAP" FT mat_peptide <422..>1120 FT /product="protease-cofactor" FT /note="Pro-Co" FT mat_peptide <1298..>1591 FT /product="helicase" FT /note="Hel" FT mat_peptide <3104..>3406 FT /product="protease" FT /note="Pro" FT mat_peptide <4013..>4768 FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; motif I (KDE) to VII (FLSR)" FT 3'UTR 6584..7793 FT misc_feature 7794..7808 FT /function="polyA tail" XX SQ Sequence 7808 BP; 2075 A; 1601 C; 1850 G; 2279 T; 3 other; ttaaaagagt tattttgaga atataaccta cgtcgttatt cacagaccaa gtctctgtta 60 atcaaaatct ccctttaaaa ctcattctac ttttacattt ggcaacatgt ctttttccaa 120 gatgttcccc ggtttcaact cagttactga aaagtgcgct accagctcct ctggttcttt 180 cttttcagag cttactgcta gtattagtaa tttctcccgc actctgtcca atgttaccaa 240 ggtttcatct caaatttctt ctcacattga agatttgaag ccttcagtta cagatgctgc 300 ttcttccttt accagcacct gtaactctgt tactaaattg ttagataaga taatgacttt 360 aattgaaccc ttcatcaagg cttactcttt tgtcgcatcc atgtacaaat caatttgtga 420 tatggttgca aagattgttg caagcatcaa agataagttc acacttggtt ttaactgggt 480 gttggacaaa tctgaggatg tggatgtttt agttatagct tttcttattt ttgcaatttc 540 tatgttaata attgttttca tttgtccaag tagtgtacta gatggagttg tacagatgac 600 tcacatagtt tttaatacag taggtaactt cttttcagct ttgtacaaat tagactggtt 660 accgacatgg tcccaaaagt tttcaatgat ggcacaagcc aatgttctac caggggaatc 720 catgtcacac tcaccacttt cacaagtggt agcatccctc atagcctttg ggatttctac 780 ccttgtgttc gtggctgtac ctggtagacc caatggtcta tccaacccgc tatcaaaaat 840 tctgtactca gcgggaagtg gtgctcaaca gtgcaatcaa ttgtttaccc tgttcaggaa 900 tatgaaagat tgtacttccc aggccttttc ctgggttctg gaaataatag tagacatttt 960 tggttttaag aatccagttt tgtctgctat tagtgccaca ttgtctacgg acttattcac 1020 gtggatggaa gaggtggatg cagtgtgtga tccagcacat cgcttggaaa attttgcaaa 1080 ccctgcattc actatcaagc tccaacatct aagggagcag gctcttaaaa tctctgctta 1140 cattgctaca catcctgtag cagcctttat gagccacagg gtaacggcag caatarccca 1200 tcttgataag atatatgggg agaactgcca gcacactggc gtgggccaat acagggcaga 1260 accttttatg gttcaatggt atggtgccag tggttgtggg aaatccacca gcatgcggct 1320 gttcatcaat gatgttttgg accgcatgga agagccaaag ttgaacaggc tctatgctgt 1380 gagtaagcga gatgcttact ggtcaaatta tgcccatcaa actgctatcc tgatggatga 1440 catgggcgct ctgagagatg gggcagggca atgccaggac attaaggatt tgatagatat 1500 caagtccact caaccagccc ccttgcccat ggcagcagtg gaggataaag gccgccactt 1560 tacctcccga tatatatttg ccacatccaa ccttatctca gctcctgctc agtgtggtct 1620 aacctacccc gatgcttttg agagaagacg ggatgttctt gtggagtgca ggaaggtggg 1680 tgagtttaac actgatgctc ccacttctca ccttgaattt gatgtggttg agagcaaaag 1740 accccatgca ataacacaca ggggtttgag ctatgatgat ttgctggaat atgtggttgc 1800 caagtgcaag gttcatgcag aaatctcagg aaaactgtat ggcgccacat caggcaaggt 1860 ggcacaggtt gatgtgtcac ctgaggaaat aatagcatcc atggatatgt tgaatatcca 1920 agataccaag caggatgcta agcttcccgt ggttgttgta agtgaagagg atagggtggc 1980 ctactcycag gagttgacag tggaagcttt gaaatatgct tatcagggta gtctgaatcc 2040 cgcagcatat ttccctcatg acatgcacaa acaggccata tttgatgtgc taagtgaatc 2100 cgccaaagaa acattcacca ggtgggttaa tgacatgctg tatcaaggtt gctgtaatga 2160 gaactatcgc tggctgataa agaatatccc agctgattat atcatgcact ttaagagctt 2220 catctacgct tccacaatca atgagcgtag ctttgacgtt cagaagcagc tgcctgatgg 2280 aatggcgcac cgtgccatag atgctgatgt ggacacactg atatgcgtgg agcagatgcc 2340 tgcccacgta caattcttgt acacagcatt tgtgaggtat tggtgccgca gaaagatgga 2400 acagcctagg caatcctggg tggtagtttg ctaccacagt attgtggatt atatcaagaa 2460 tgcttggtat gatttaccgt acatcttgag agttctgatt aaggctggcc ttattttaat 2520 tgcactcaat ggtgcatttg gggctgtcac agcattctgt gcttgttggc aatccaacac 2580 tttcccttca gcagaaggaa gaggagggat taccaacgag tcaaatagca tctccagccg 2640 gaagaacaag ggaaagagca tctttgctcg atctttgctg gcacaagcca agggtgatat 2700 gctggagaaa tgggcaagtg atgatggctt catcaatgaa ggattgaaga aaaacctagt 2760 cgtcttgaga ctaggtgaag gtgtctactt cagaggcacc tatgtctgct cgggctgggt 2820 gatgacagtg gctcatgctt tttcaagcct ccgtgatggc acaactttct caataataca 2880 tgcccagtca atttccaagg tgcaatacaa tgccaaaact gcacggttct tgaaggagca 2940 agatattgtc ctgctcaatg ttggaaaccc cgatggtccc aagcctgata ttcgcaaaca 3000 ctttcctgta cgggatggtg tttgtttttc taagggcact caaggggtat gtgtgagagc 3060 agtagcatca aaggatgctt cgcaaggaaa tcttgagtac ttgcgtttta atgtgatgat 3120 gtccaagggt taccttgaaa aggtaacgta ccagatggac tctagttcct ttaaactgga 3180 gtctcaagca tcttatgagt atcacatgaa tggtgaaaat ggtgattgtg gtactcttct 3240 tcttttgccc aacgtgcaag acaaacaacc atgcattgtg ggtattcatt gtgcttctta 3300 tgatgaagaa gctgcgcaca aagggtttgt agcatccaat gctacagcta ttttccgaga 3360 tcagttggaa gatcttccga ctggtccggt taaagtagca atggtaaggt gccagctcct 3420 taaggatcta cgagccaggg atgcggctct ttttgaagaa aaacaggtgg cttttgttgg 3480 cacattgcca gctgaacaag cagccacggt tccccacaaa acaacgctgc gaaggagtgg 3540 cttgtttgaa gcttttgggc ctgcagaaac tgctccatct atcatttcag cttcagacaa 3600 acgtggggaa ggttttgatc cgtacgtggc tggcatacaa aaatacaatg aaacagcaca 3660 aaattttgat gaggacattg cgaggctagc ctatgaaggg ctacgtcaag caattttgcc 3720 tgtgctgcac tcccagcgag ttccttttgg aaagcccgtc acacagaatg aagatgtggt 3780 gctcaatggt gttgatgggt ttgactattt tgacgggatg gagttgagta cctcttgcgg 3840 gtatccgtac aacaagttgg gtatgggcac tagcaagaga gagtttgtgg agccaagtgg 3900 agatggagat cgagtccaac tcaaaaggac cactccaatt tttgatgact gggaggcttt 3960 ggatgtggaa attcgcaaag gaaactttgt ggaactggtc accacccaat gtgccaaaga 4020 tgagcgcttg ccgttggaaa aggtttttgg gaagcggaaa acccgtttgt ttgaaattct 4080 tcccttccat tacaatatgt tggttaggaa gtatttcctg gatttttccg ccagtctgat 4140 ggcatcccac aatgctctgc catgcaaagt gggcattaat cctggaggta ttgaatggac 4200 tctgttggct aatggcttca gagcagtctc tgatacagga ttttctgctg actattccag 4260 ttttgatggg agagctccca tctttgcctt tcaatggttt tgtgatcttg tggatgacta 4320 ctatggatca cctcctggtt ctccagactc caatgccaga catgtgcttc ttatgatggc 4380 ttcatgccat tatactattt gtgagaacaa ggtttttagg ttggtgggag gtatgccttc 4440 aggatttgca ctcaccgtta tcttcaactc tcttctcaat gagttttata tgcgttatgc 4500 atttatttct ctattgagaa gaccacatat agcagctcaa gctatagggt gcaaaccctc 4560 tgatttcaac aagctatttg tggcagtcta tggtgatgac aatctagttg cagttcccat 4620 ggaattgcat tggtatactc tgccagctat tgcccaagaa ttggagatgg tgaatgttat 4680 tataaagaat ggcatcgaca agaacatgga tgttagcagt tccaaaatgc tagacttgtc 4740 tgagctaaca tttctaagca gaggttttaa gaggcaccgt ctaggatacg ttcaagctcc 4800 tctgaaatgg gtatctatca tagaaccaat gtactggata aggccttctg ttggttgtcc 4860 cgatgctctc gctatgttgg aaaacataga cacgggagtt agagaggcat ttcaccatgg 4920 gcctcaggtt tttgaaaagt tggtgacaga tgttcaaaac gctctcaagg agcggtgttt 4980 cccagccacc acatttccta catattttga attggagcag gactggctgg tggaggttac 5040 aggaaatcca gccattgggc tcatcaagga acttcatatt gcagcttcag cttttgtgcc 5100 tttgccccca ggcaatactg ttctgaattt ttctgatgga gtgcatactt ttgctgaccg 5160 agtgagtttc tgctcctcgc gaacagctgc tgcacagcag tgggacacca ccactgtttt 5220 ggtgaactgc actggggcaa agagacccac atgggtaaga gggcccacca catggaggga 5280 ctttgaaggg cttatttggc cttacacaat ggctgcaatc aaggaccaca tctgcagcat 5340 tgtaaccaaa ggggtgacca aaccacatgt ggtttttgtt tgtggcaatg ggtatgctat 5400 tggtccagtg tgcgctgcat tgtactgtct gtccactggc caatattctt ctcaggatgt 5460 tgttgtgaga ttgagaacca tagcagatgt tacagatctc agtcaatatc caggaggttg 5520 tgccaagtat cttctgaaat gtgctgatac aagagaagaa gagcttgcag atacatgtaa 5580 aattgcacaa gccaagggtg agacaccagc atacatacct caaggaggat tttcccttgg 5640 taattttaga attgtgcaag ggagaattga tctacagttg gcccagcgct tgccttttac 5700 agtgggacct tatgggggat ggggtcaaca cactactaga gagcttaagt tgctgctcaa 5760 ggacatggag aagatatatc aaattttagt ccaaagagag agcttcatca ctctctactt 5820 tgactatctc agttcagagc aggtgatgtt gttggttgac tttcttaggc tccaagggtt 5880 ttttccycgc caaaatgatg tggattactt gcttaaagcc tttaagctga gcaagcagag 5940 gcacaataag gaaaactgtc atacggttta ctttagaaag ccttttctct caaggaaaat 6000 gaccatgggg tccaaagaaa ttctgtccgc aacagctgct gagtcattgt ttggtatgga 6060 tgtttccgct aatgtgctca agagtaggct acttcatctt cagaagccca taaagtgttc 6120 atccatggag ttggccttta aaatttattg tgtcatccag ggccacctga gcaaggaagt 6180 tgtaactcac ttccaacgca tgtaccaaca agatctgaca gaagggatca tagagaaagt 6240 gatattgtgg ttaaccgcca cactgtcgga gagctttcca gtggatcttg ttgatgtacc 6300 tttaggcttg gataacatag agatccagga taaaggtttt tccctaaatc caaataatat 6360 aaatatgaat gcatgtgatg ccatcttgtt tcaactcact gagtgttaca accgatcaac 6420 aaagaaacat gtgttctgtc gctacacgac tgcatcctct cttgttgttg cctatgtgct 6480 tgcacataga catcagacaa ttgatgagtt gccgtccttc tatgcaacac acccagatgt 6540 gttgcttttg acaccaatcc taacaggcta caaagcgcct tgagtcgggc taaatgactc 6600 agcttgtaca tgcaatatgt gtactgtgaa taatattgca tgaggattaa cggagagtac 6660 tgacttttgc tagtcgggag tccgacccac tatatgggta cctgtgaatc tacacgggtt 6720 aggagatttg cacgcctctc cataaatatg gttcgtgtgc cctgccttgg ttagacagcc 6780 ttccatgccg gaagtaaatg gcctataacg gagagtactg actttaacta gttgggagtc 6840 cggctccatt tggagtacca atgaatttac attggttaaa gagatttgca cgcctctctt 6900 taaatatgga tcgtgtaccc tgcttggtta gaaagttcct ttacttaggt ttacaaagta 6960 cggggagcac tccctggtta acatagtgca ggtgctatcc catgatagtc ctttaactca 7020 agggttgagt tcggtttgca tcttttgccg tgatgaaaga tgaggtagct tcccccttat 7080 tgggaggctg aaactacaca tatgtagtgg gtttgactga gtcctataat cagtccgttt 7140 gaaattcgat aattttccgt agcttgcgtc aagctgctca cgttaggggt gtgagtgaag 7200 atgcgccgta ccacgtcttc cccggcaatg ccagtggttc agagcgggcc ctcagaatag 7260 aggttaaaac tagtgtgatg gtgtatatca cgataaaagt gacacccggg ttgtgctgcg 7320 cctagttaac acgagcacag gtcccaccct atagtggaag aaacttggtt gagttttaaa 7380 agaacaaccc gtttgagcga cgacaaagtt ccgtagcttg cgacgagctg tttgtgttag 7440 gggcacaaat gaagttatag cacaccactt cttccctagg ttcgtccagt ggtttcacag 7500 tgctatcctc agaaaagagg ttaaatctag tgtgatggtg tatatcacga taaagaatga 7560 cacccggggt gtgcttctcc tagttaactc gagcacggtt ttcacaccac agtgaaacta 7620 tcttattgct ttaaatgttg tttgtttgtt ttacttgttt tattgtgtgt ttaatatcat 7680 gcatatttgc tgttgaaggt tctgtcgatg aggtcaaatg gatactcggg aactacagta 7740 actttgcatt tgaattgttt tcaattcagt gtgtgagttt gaatatgtat tttaaaaaaa 7800 aaaaaaaa 7808 //