ID DQ388513; SV 1; linear; genomic RNA; STD; VRL; 4969 BP. XX AC DQ388513; XX DT 23-JUN-2006 (Rel. 88, Created) DT 23-JUN-2006 (Rel. 88, Last updated, Version 1) XX DE Cytoplasmic citrus leprosis virus segment RNA 2, complete sequence. XX KW . XX OS Citrus leprosis virus C OC Viruses; Riboviria; Kitaviridae; Cilevirus. XX RN [1] RP 1-4969 RA Guerra A.S., Manjunath K.L., Rangel E., Brlansky R.H., Lee R.F.; RT "Citrus leprosis symptoms can be associated with the presence of two RT different viruses, cytoplasmic and nuclear, the former having a RT multipartite RNA genome"; RL Unpublished. XX RN [2] RP 1-4969 RA Guerra A.S., Manjunath K.L., Rangel E., Brlansky R.H., Lee R.F.; RT ; RL Submitted (03-FEB-2006) to the INSDC. RL National Clonal Germplasm Repository for Citrus and Dates, USDA RL Agricultural Research Service, 1060 Martin Luther King Blvd., Riverside, CA RL 92507, USA XX DR MD5; fdbb948049852c95279c0801d90cc136. XX FH Key Location/Qualifiers FH FT source 1..4969 FT /organism="Citrus leprosis virus C" FT /segment="RNA 2" FT /host="Citrus sp." FT /mol_type="genomic RNA" FT /country="Panama" FT /isolation_source="infected leaf, fruit and stem" FT /db_xref="taxon:347219" FT 5'UTR 1..65 FT gene 66..458 FT /gene="ORF1" FT CDS 66..458 FT /codon_start=1 FT /gene="ORF1" FT /product="16 kDa protein" FT /db_xref="UniProtKB/TrEMBL:Q15GA2" FT /protein_id="ABG33780.1" FT /translation="MLNWSTIEWDSFWQQHDCGCFTFECDFITSIDPLVHDYAIYHSLS FT QKTVLEMLQTHLVAGPDASETIRRQVAFLIYDFHRLSCNCDKCYGDCNTTTTGRFKVVD FT RVLNDHIEFGIMRRQDLIPILHNLET" FT gene 1589..3202 FT /gene="ORF2" FT CDS 1589..3202 FT /codon_start=1 FT /gene="ORF2" FT /product="61 kDa protein" FT /note="movement protein" FT /db_xref="UniProtKB/TrEMBL:Q15GA1" FT /protein_id="ABG33781.1" FT /translation="MALFQLFSFLNVTLGLVSNIYNSTGHLSIDKACSGYSTEVFKGVC FT LPSYSYVKVDRHILTKDDRYYLGYAKATNREYQLYSLHIGTYDLFGSDIMSCGARGYAL FT GLHNGDLELVLNYCRKVDGQKHIGEVFQSCRFVEYSEHMISGIVHSIPKDLMEEFSPIG FT KVPYFGIMPFRTECADQCSTKQAFYAMDAYPFYNIGYWFPLCADKYIPLCYSGRTDPCP FT LGYEERLIKVHSYMEGFESGMKTVCKSGEYIFPAWYSGQSEIYDTVVKPYIINVPEYCG FT RFSRSDKSLVYSRFGFRGTIFSGLKVITLDGIDYLTTDFCVNYSMHHYVKPLVFERMRK FT SFICTSSGCLYKGFDVNHLHDICTPKLIVKRHEALISSFSFINTLGTKVGAVPYDFDGN FT IIQFIDVFSIDGFYVYSLSHKKIQTLTVMLVHSEEEWYMKLLHFVADDILRECLSTVFK FT VLFSAISACLSFIIDVGGCCFRQFIFVCLDSVILLLLLLPNYTHLTFILGFTLNAYIQL FT VYYESCCFRAYRDIAETIDL" FT gene 3227..4066 FT /gene="ORF3" FT CDS 3227..4066 FT /codon_start=1 FT /gene="ORF3" FT /product="31 kDa protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q15GA0" FT /protein_id="ABG33782.1" FT /translation="MALSTNNNSSHVGADDFLELENILSSEYNEEGIFKTSKTVCIRTD FT KRIGVGFLTPNDMISRLVGFINRKAEDAGVRSVESFRQISDVVLIIVPQIALPAELSLK FT LVDSANILEAVNDQEVTVNSTGGPCVVVMNCAHSIPNEDRTHVNGSEVHRRLGIQYQVD FT CDNISGRVTTFSITALWREAFSFRPSFYKVSDPLVVPISVGFRKAVIAKSHADLQRSIG FT RGLIVTHHSSESSVTSECPIDLTVKKSTGLKIRDKSEDDNQRKHPVPLTSVIISLKL" FT gene 4091..4735 FT /gene="ORF4" FT CDS 4091..4735 FT /codon_start=1 FT /gene="ORF4" FT /product="25 kDa protein" FT /db_xref="GOA:Q1KZ54" FT /db_xref="InterPro:IPR032441" FT /db_xref="UniProtKB/Swiss-Prot:Q1KZ54" FT /protein_id="ABD59465.1" FT /translation="MDAQLLQANKRLLRRAANVRQRYKMLATESFVADIKQILLRFIQK FT PNVIIMYISVLVLFAAHIDSNTHDILDDLAAQFPNNTFIEWAKSNFFRICGALVFIPVI FT IDTEEKHRNYLALVIFVFLMGFPQRSIMEYFIYSISFHVYAKAKHPVTRIFIIGAAVFS FT CVMFGIFTNEQLRKLYAELPKVPTHPVAVNRVEKVANRASRVSTEGTVNFG" FT 3'UTR 4736..4969 XX SQ Sequence 4969 BP; 1269 A; 908 C; 1107 G; 1685 T; 0 other; ataaatctaa tcaatctatt gtattgttct agactaataa ctctcaatta ttagtgaaca 60 ttacaatgct gaactggtct acgattgagt gggacagttt ctggcaacag cacgattgcg 120 gttgctttac gttcgagtgt gattttatta cctctataga tccactcgtg catgattacg 180 cgatttatca ttctttatct caaaagactg ttctcgagat gcttcagacg cacttggttg 240 ccgggccaga tgcatctgaa acaattcgaa gacaagttgc ctttctcatt tatgactttc 300 acaggttatc ctgtaattgt gataaatgtt atggggattg caatactacc actaccggta 360 gattcaaggt ggtcgatcgt gttttgaacg atcacattga attcggtatt atgcgtcgtc 420 aagacctaat accgatactg cataatcttg agacttaatt gtcatctcgc tagcacatgt 480 ttgtggggta tgacgagtac taattcaagg tgcggggcta cgccttatga ttttgtcgac 540 tttcgcgtgt tgacaacctc attactggtc ttaaaccgct taatcccaat gcggggactt 600 gtgtttgtca tttgccatac ttcacaaaca tgtgctagca agtgaataca tatgtttgta 660 cactgtatca tttgtttcat gagctgtttc agtcgggcat agtataaata agagcgcaag 720 ggaagggact gcgcatacta atacagctgt tcgagctcat gttgcttgtg aatcataggt 780 agtcaacgca ggatttgtct gcaatatcta cggatcaagg gaaattgcgt ggagatcatg 840 tacggagacg gcactacgct gtataggatc ttgagggatc aaaccagcct taatccgctt 900 gccccaatgc ggggacgtgt atgtattgaa gcgcggtttc ctacgagaag cagattgcgt 960 tgacatattc ttgactatca tgattgatgg agcttttgtt taaccacgta gtacttggac 1020 ggaacggtgc atcgccttga ggtaaggtca taaagccgat tgccccaatg cggggacgtc 1080 cattgtacga agcggggcga caaagttttc acttacagtt tacatcactt gtatttcact 1140 ttaagtatat tggtcatttg attgctattt gacttgtcat atagttatca cttgaccttt 1200 gaactaatac agcgagtatt gaacgctggt acgtatacta ctagggttta gtcctaatag 1260 tattcatttt caaccacttt caatattctt tgttttcatt gaatattgat aattgttaga 1320 tttattgcta gggcttagcc ctagcagtat tcatcttcaa ccaccttcaa tattctttgc 1380 ttatgccacg agtcacatat gatttgagat gaattgtagt tgtgactaca tgtaaccata 1440 attgatttgg gagcgttggc ttccaggttg atgccgaccg gtttgtatat attgtaaatg 1500 ttgtaaatac agtttcatac gtacgtgcgg aacagtttgc tgtaaatacg agagcctaca 1560 gcaaattaag ctaaaatagt attgtcaaat ggcgctattt cagcttttta gtttcttaaa 1620 tgttacgttg gggctcgtat ccaacatcta caatagtacg ggacacctta gtattgataa 1680 agcctgttcg gggtacagta ctgaggtgtt caagggcgtt tgtctgccct cgtatagtta 1740 tgtcaaggtt gatagacata tcttaacgaa ggacgatagg tactatcttg gttacgctaa 1800 ggccacaaat cgtgaatacc agttgtatag tttacatatt ggtacctacg atttgttcgg 1860 tagtgatatc atgtcatgtg gtgctagggg ctatgctctg ggtctccaca acggagacct 1920 tgagttggtt cttaattatt gccgtaaggt cgatgggcag aagcatattg gtgaagtgtt 1980 ccaaagttgt agattcgttg agtatagcga acatatgatt tctggaattg ttcactcgat 2040 acctaaggac ttaatggaag agtttagtcc aataggcaag gtaccatatt tcggtatcat 2100 gccttttagg actgagtgcg cagatcaatg ttctactaag caagcatttt atgcaatgga 2160 tgcttatcct ttttataaca ttggctactg gtttccatta tgtgctgaca agtatatccc 2220 actatgttac agcggtcgta cggatccatg tccacttgga tatgaggaga ggcttataaa 2280 agtccactca tatatggagg ggtttgagtc tggtatgaag accgtttgta aatctggtga 2340 atatattttt ccagcctggt actcaggaca atcagagata tatgatacgg ttgttaaacc 2400 gtatattatt aatgtccctg aatattgtgg gcgatttagt cgctctgata agtccttggt 2460 ttattccagg tttggtttta gagggactat cttttctggg cttaaggtta ttacattaga 2520 tggtattgat tatttgacca cagatttctg tgtcaattat tctatgcatc attatgtaaa 2580 accgctggtt tttgaaagga tgcggaagtc ctttatttgc acctcgtctg gttgtttata 2640 taaaggcttt gatgttaatc atcttcatga catttgtaca cccaaattga ttgtgaaacg 2700 tcatgaggct ttgatttctt ccttttcttt cataaacact ctcggtacca aagtgggtgc 2760 tgttccttat gattttgatg ggaatatcat acagttcatc gacgttttta gcatcgatgg 2820 gttttatgtt tactcgttga gtcacaagaa gatccaaact ctcacagtaa tgctcgttca 2880 ttctgaagaa gagtggtata tgaagttgtt gcattttgtt gcggacgaca tacttaggga 2940 atgtttgagt acagtcttta aagtattgtt ttccgctatt agtgcttgcc tatccttcat 3000 tattgatgtt ggtggatgtt gcttccgcca attcatcttt gtttgtttgg attctgtgat 3060 tttgttattg ctactgctcc cgaattacac ccatttaacg tttatcttag gatttacgct 3120 gaatgcttac atacagttgg tgtattatga gagctgttgt tttagagctt atcgcgacat 3180 agctgaaacc attgatttgt aaatcaatgg tgaattttat gttgagatgg ctctttctac 3240 caataacaat tcttctcacg ttggtgctga cgattttttg gaattggaga atatcttatc 3300 ctccgagtat aatgaggagg ggatattcaa gacttcaaag accgtttgca ttcggactga 3360 caagcgtatt ggcgttggat ttctgacacc gaacgatatg atttctcgtt tggttgggtt 3420 cataaaccgt aaagctgaag acgctggggt tagatctgtg gagtctttta ggcagatatc 3480 tgatgtcgtg cttataattg tgccgcagat agcgctcccg gccgagctgt cgctaaagct 3540 tgtcgattca gctaatatac tagaggctgt taatgaccaa gaggtcactg tcaatagtac 3600 tggtggtcca tgtgttgttg tcatgaactg tgcccattcg attccgaatg aggacaggac 3660 tcatgttaat ggatctgaag ttcacaggcg gcttggtata cagtatcaag ttgactgtga 3720 taatatttca ggtcgtgtaa caaccttttc gatcactgca ctatggcgcg aggctttttc 3780 gtttcgacca tccttttata aggtgtcgga tcctcttgtg gtcccaatat ctgtgggctt 3840 tcgcaaggca gttattgcga aatcacatgc agatttacaa aggtccatag gtagaggttt 3900 gattgtcact caccactcct ctgaatcgtc agtcacgtcg gagtgtccga ttgacctgac 3960 ggttaagaag agtactggtc ttaaaatacg agacaagagt gaggatgata atcaaagaaa 4020 acatcctgtt ccattgacgt cagtaataat aagcttaaaa ctttaagagt atcgacgacg 4080 ccaattgtga atggacgctc aacttctaca agcgaataaa cgcctcttga ggcgcgcagc 4140 taacgttagg caaagatata agatgttggc aacggaaagt ttcgtcgctg acatcaagca 4200 aattttgctt aggtttatac aaaaacctaa cgttataatt atgtatatca gtgttttggt 4260 tctatttgct gcgcatatag actcaaacac tcatgatatt cttgatgatt tggctgcgca 4320 gtttcctaat aacaccttta ttgagtgggc gaagagtaac ttcttcagga tctgtggtgc 4380 tctggtattt ataccagtta ttatagatac tgaagagaag cacaggaatt accttgcttt 4440 agttatattc gttttcctta tgggttttcc acaaagatcg attatggagt atttcatata 4500 ttccatatct ttccatgtgt atgctaaggc taaacaccct gtcactcgga tttttatcat 4560 tggggcagcc gtgttttcat gcgttatgtt tggcatattt accaacgaac aattgaggaa 4620 gctttatgct gaactcccga aggtgccaac tcatcccgta gctgtgaaca gggttgaaaa 4680 agttgccaat agggcttcta gggtgtctac tgaaggcacc gtcaactttg gttgacacct 4740 actggtgtta tgcggagggt tttcttgcgg tttctttccc tcactatatg ttttgaatcg 4800 ctaatctctg gtactttttg tattgaagat tatttgaact atgttcagtc cggtcgttgt 4860 cagctgggcg aggttgaaat tcctcaagtt tgattaattt ctagtctctt ctagctggtg 4920 gtgtaccact ttttcttttt tgattttctt ttcttttgtc tttatgagc 4969 //