ID DQ347949; SV 1; circular; genomic DNA; STD; VRL; 2610 BP. XX AC DQ347949; XX DT 29-JAN-2006 (Rel. 86, Created) DT 29-JAN-2006 (Rel. 86, Last updated, Version 1) XX DE Tomato chino La Paz virus isolate Solanum MM4 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato chino La Paz virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2610 RA Gregorio-Jorge J., Mauricio-Castillo J.A., Ambriz-Granados S., RA Alpuche-Solis A.G., Arguello-Astorga G.R.; RT "Tomato chino La Paz virus isolated from the weed Solanum rostratum coexist RT with several begomoviruses in mixed infections"; RL Unpublished. XX RN [2] RP 1-2610 RA Gregorio-Jorge J., Arguello-Astorga G.R.; RT ; RL Submitted (02-JAN-2006) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica, A.C., Camino a la Presa San Jose 2055, San Luis Potosi, SLP RL 78231, Mexico XX DR MD5; 824b5cb20c36b2f6837e9557092ce4e7. DR EuropePMC; PMC6344024; 30673741. XX FH Key Location/Qualifiers FH FT source 1..2610 FT /organism="Tomato chino La Paz virus" FT /segment="DNA-A" FT /isolate="Solanum MM4" FT /mol_type="genomic DNA" FT /country="Mexico" FT /db_xref="taxon:240492" FT gene 184..939 FT /gene="AR1" FT CDS 184..939 FT /codon_start=1 FT /gene="AR1" FT /product="coat protein" FT /note="CP; capsid protein; encapsidation of viral genome; FT AV1" FT /db_xref="GOA:Q2L8C2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2L8C2" FT /protein_id="ABC74545.1" FT /translation="MPKRDAPWRLMSGTPKVSRTSNYVPPDGLGRKFDKSSAWANRPMY FT RKPRIYRTVRSADVPRGCEGPCKIQSFEQRHDISHTGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDDNIKLKNHTNSVMFWLVRDRRPSGTAMDFGHLFNMFDNEPSTATV FT KNDLRDRFQVLHRFHAKVTGGQYASNEQTLVKRFWRVNHRVTYNNQEAARYENHTENAL FT MLYMACTHASNPVYATLKIRIYFYDSVLN" FT gene complement(936..1334) FT /gene="AL3" FT CDS complement(936..1334) FT /codon_start=1 FT /gene="AL3" FT /product="replication enhancer protein" FT /note="REn; AC3" FT /db_xref="GOA:Q2L8C1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2L8C1" FT /protein_id="ABC74548.1" FT /translation="MDSRTGESITAEQAESSVFIWEVPNPLYFTILSVEDPIHTNTKIY FT HIQIRFNHNLRKALHLHKAYLNYQIWTTSVRASGTNYLNRFKYLVLLYLDRLGVICINN FT VIRAVRFATDKSYVNHVLENYSIKFKIY" FT gene complement(1081..1467) FT /gene="AL2" FT CDS complement(1081..1467) FT /codon_start=1 FT /gene="AL2" FT /product="transactivation protein" FT /note="TrAp; transcriptional regulator of late genes; FT silencing supressor; AC2" FT /db_xref="GOA:Q2L8C0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2L8C0" FT /protein_id="ABC74547.1" FT /translation="MQNSSSSTPPSIKPKHKIAKYRIRRKRIDLNCGCSFYQHIDCVNH FT GFTHRGEHHCGTSREFRFYLGSTKSPLFHDTQCRGPNTHEHQDIPHPNTVQPQPEEGIA FT STQSIPQLPNLDDISSSFWDELLK" FT gene complement(1424..2467) FT /gene="AL1" FT CDS complement(1424..2467) FT /codon_start=1 FT /gene="AL1" FT /product="replication initiation protein" FT /note="Rep; RCR-initiator protein; rolling-circle FT replication initiator; AC1" FT /db_xref="GOA:Q2L8B9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2L8B9" FT /protein_id="ABC74546.1" FT /translation="MPLVPKKFLINSKNYFLTYPHCSLSKEETLEQLLRLSTPTNKKYI FT KIARELHEDGEYHLHVLIQFEGKFKTQNCRFFDLVSSTRSTHFHPNVQGAKSSTDVKSY FT VDKDGDTIEWGDFQIDGRSARGGQQTANDAAAEALNASSKEEAMRIIKEKLPKEFLFQY FT HNLFSNLDRVFAKAPEPWVPPFPISSLTNVPDEMQEWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGPHNYLSGHLDFNPRVYSNEVEYNVIDDVTPQYLKMKHWKELIGA FT QRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKSFLDKEDNAALKDWTIYNAKFIFL FT NSTLYQA" FT gene complement(2050..2307) FT /gene="AL4" FT CDS complement(2050..2307) FT /codon_start=1 FT /gene="AL4" FT /product="AL4" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q2L8C3" FT /protein_id="ABC74549.1" FT /translation="MGNIISTCLSSSKANSKRKIADSSTWYPQLGQHISIRTFRELNQV FT PTSSPMSTRTEIQLNGETSRSTADQLEEVSKQLTTLPQRP" XX SQ Sequence 2610 BP; 656 A; 533 C; 604 G; 817 T; 0 other; accggatggc cgcgcctttt tgacccggcc caagtccgga aatttcgttg ggccttcctg 60 gataaagtta gccaatcagc gcacgcgtgt gtagtctaat tattaacaac ttggtgacca 120 agttgttttg tgggtttata aatttgtcgt tatgtgtgtg gtccagatat atagattttg 180 aaaatgccta agcgggatgc cccatggcgt ttaatgtcgg gtacccctaa ggttagtcga 240 acctcaaatt atgtccctcc tgatggattg ggccgtaaat ttgataagtc gtctgcatgg 300 gccaacaggc ccatgtacag aaagcccagg atatatcgga ccgtaaggtc tgcggatgtt 360 cctcgaggct gtgaagggcc ttgcaagatt cagtcgtttg agcagcgtca cgatatctct 420 catactggga aggtgatgtg tatctctgat gttactcgcg gtaatggcat tacccatcgg 480 gttggtaaac gtttctgcgt taagtccgtg tatatattag ggaagatctg gatggatgat 540 aacatcaagc tgaagaacca cactaacagc gttatgttct ggctagttag ggataggagg 600 cctagtggaa cggctatgga ttttggtcac ctcttcaaca tgttcgataa tgagcctagt 660 accgccactg tgaagaacga tcttcgagat cgtttccaag tgctgcacag gtttcatgcg 720 aaggttacag gtggtcagta tgcaagcaat gagcagacgt tggtgaagcg tttttggcgg 780 gtgaatcatc gtgttacata taataatcag gaggcagctc ggtatgaaaa ccatacggag 840 aacgccttaa tgttgtatat ggcatgtact catgcctcta accctgtgta tgctactctt 900 aagatccgga tctattttta tgattcggtg ttaaattaat aaattttgaa ttttattgaa 960 taattctcaa gtacatgatt tacatatgat ttatctgttg cgaagcgaac agctctgata 1020 acattattaa tgcaaataac acctaaccta tctaaataca ataagactaa atatttaaat 1080 ctatttaagt aattcgtccc agaagctcga actgatgtcg tccagatttg gtagttgagg 1140 tatgctttgt gtagatgcaa tgccttcctc aggttgtggt tgaaccgtat ttggatgtgg 1200 tatatcttgg tgttcgtgtg tattgggtcc tctacactga gtatcgtgaa atagagggga 1260 tttggtactt cccagataaa aacggaactc tctgcttgtt ccgcagtgat gctctcccct 1320 gtgcgtgaat ccatggttga cacaatcgat gtgctggtag aatgagcagc cacagtttag 1380 gtctatcctc ttacgacgaa tcctgtattt tgcaatcttg tgtttaggct tgatagaggg 1440 tggagttgag gaagatgaat tttgcattat agatggtcca gtctttcagt gctgcattat 1500 cctctttgtc gaggaaactt ttatagctgg ctccctctcc tggattacag agcacgattg 1560 acggtatccc acctttaatt tgaactggct ttccgtattt gcagtttgat tgccaatccc 1620 tttgggcccc aatcagctct ttccaatgct tcatctttaa atattgcgga gttacgtcat 1680 caatgacgtt gtactccact tcattcgagt aaaccctagg attgaaatct aggtgtccac 1740 tcaaatagtt atgtgggcct aaagcacgag cccacattgt tttacctgtc ctcgaatcac 1800 cctcgatgat tatactaata ggtctctccg gccgcgcagc ggcaccccta ccaaaataat 1860 catcagccca ttcttgcatc tcatccggaa cgttcgtgag ggaagagatt ggaaacggag 1920 gaacccatgg ttccggagcc tttgcgaata ctctgtctag gttactaaac aggttgtgat 1980 attgaaaaag aaactctttt gggagcttct ctttaataat ccgcattgcc tcttccttcg 2040 aggaagcatt tagggcctct gcggcagcgt cgttagctgt ttgctgacct cctctagctg 2100 atctgccgtc gatctggaag tctccccatt caattgtatc tccgtccttg tcgacatagg 2160 acttgacgtc ggtacttgat ttagctccct gaacgttcgg atggaaatgt gttgacctag 2220 ttgaggatac caggtcgaag aatcggcaat tttgcgtttt gaatttgcct tcgaactgga 2280 taagcacgtg gagatgatat tccccatctt cgtgcaattc ccttgcaatt ttaatatatt 2340 ttttattagt cggagtgctc aaccgtaata gttgctctag ggtttcttct ttagataaag 2400 aacagtgggg gtatgttagg aaataatttt tagaatttat aagaaacttc tttggaacta 2460 agggcatttt tgtaaatatt ggaggtcgac ccaattgagc tctcttcaaa aactctaagg 2520 aattgggtat actgggtcct tatttatact agaaggtcct atagaacttt taatcgcatc 2580 cgctcacgtg gcggccatcc gtataatatt 2610 //