ID DQ347948; SV 1; circular; genomic DNA; STD; VRL; 2610 BP. XX AC DQ347948; XX DT 29-JAN-2006 (Rel. 86, Created) DT 29-JAN-2006 (Rel. 86, Last updated, Version 1) XX DE Tomato chino La Paz virus isolate Solanum MM1 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato chino La Paz virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2610 RA Gregorio-Jorge J., Mauricio-Castillo J.A., Ambriz-Granados S., RA Alpuche-Solis A.G., Arguello-Astorga G.R.; RT "Tomato chino La Paz virus isolated from the weed Solanum rostratum coexist RT with several begomoviruses in mixed infections"; RL Unpublished. XX RN [2] RP 1-2610 RA Ambriz-Granados S., Arguello-Astorga G.R.; RT ; RL Submitted (02-JAN-2006) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica, A.C., Camino a la Presa San Jose 2055, San Luis Potosi, SLP RL 78231, Mexico XX DR MD5; d619c8e6b3742679548f9a2c3a48c55c. XX FH Key Location/Qualifiers FH FT source 1..2610 FT /organism="Tomato chino La Paz virus" FT /segment="DNA-A" FT /isolate="Solanum MM1" FT /mol_type="genomic DNA" FT /country="Mexico" FT /db_xref="taxon:240492" FT gene 184..939 FT /gene="AR1" FT CDS 184..939 FT /codon_start=1 FT /gene="AR1" FT /product="coat protein" FT /note="CP; capsid protein; encapsidation of viral genome; FT AV1" FT /db_xref="GOA:Q2L8C4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q2L8C4" FT /protein_id="ABC74540.1" FT /translation="MPKRDAPWRLMSGTPKVSRSSNYVPPDGLGRKFDKSSTWANRPMY FT RKPRIYRTVRSADVPRGCEGPCKIQSFEQRHDISHTGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPSGTAMDFGHLFNMFDNEPSTATV FT KNDLRDRFQVLHRFHAKVTGGQYASNEQTLVKRFWRVNQRVTYNNQEAARYENHTENAL FT MLYMACTHASNPVYATLKIRIYFYDSVLN" FT gene complement(936..1334) FT /gene="AL3" FT CDS complement(936..1334) FT /codon_start=1 FT /gene="AL3" FT /product="replication enhancer protein" FT /note="REn; AC3" FT /db_xref="GOA:Q2L8C8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2L8C8" FT /protein_id="ABC74543.1" FT /translation="MDSRTGESITVDQAENSVFIWEVPNPLYFTILSVEDPIYTNTRIY FT HIQIRFNHNLRKALNLHKAFLNYQIWTTSVRASGTNYLNRFKYLVLLYLDRLGVICINN FT VIRAVRFATDKSYVNHVLENYSIKFKIY" FT gene complement(1081..1467) FT /gene="AL2" FT CDS complement(1081..1467) FT /codon_start=1 FT /gene="AL2" FT /product="transactivation protein" FT /note="TrAp; transcriptional regulator of late genes; FT silencing supressor; AC2" FT /db_xref="GOA:Q2L8C7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2L8C7" FT /protein_id="ABC74542.1" FT /translation="MQNSSSSTPPSIKPKHKIAKSRIRRKRIDLNCGCSLYQHIDCANH FT GFTHRGEHHCGSGREFRFYLGSTKSPLFHDTQCRGPNLHQHQDIPHPNTVQPQPEEGVE FT STQSIPQLPNLDDISSSFWDELLK" FT gene complement(1424..2467) FT /gene="AL1" FT CDS complement(1424..2467) FT /codon_start=1 FT /gene="AL1" FT /product="replication initiation protein" FT /note="Rep; RCR-initiator protein; rolling-circle FT replication initiator; AC1" FT /db_xref="GOA:Q2L8C6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2L8C6" FT /protein_id="ABC74541.1" FT /translation="MPSLPKKFLINSKNYFLTYPHCSLSKEETLEQLLQLNTPTNKKYI FT KIARELHENGEYHLHVLIQFEGKFKTQNCRFFDLVSSTRSTHFHPNVQGAKSSTDVKSY FT VDKDGDTIEWGEFQIDGRSARGGQQTANDAAAEALNASSKEEAMRIIKEKLPKEFLFQY FT HNLSSNLDRIFAKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGMGVAARPERPISIIIE FT GDSRTGKTMWARALGPHNYLSGHLDFNPRVYSNEVEYNVIDDVTPQYLKMKHWKELIGA FT QKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKAFLDKEENAALKAWTLHNAKFIFL FT NSTLYQA" FT gene complement(2050..2307) FT /gene="AL4" FT CDS complement(2050..2307) FT /codon_start=1 FT /gene="AL4" FT /product="AL4" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q2L8C5" FT /protein_id="ABC74544.1" FT /translation="MGNIISTCLSSSKANSKHKIADSSTWYPQLGQHISIRTFRELSQA FT PTSSPMSTRMEIQSNGENSRSTADLLEEVSKQLTTLPQRP" XX SQ Sequence 2610 BP; 653 A; 534 C; 612 G; 811 T; 0 other; accggatggc cgcgcttttt tgacccggcc caattgcgga aattgcgttg ggccttccta 60 gataaagtta tccaatcagc gcacgcgtgt gtagtctaat tattaacaac ttggcgacca 120 agttgttttt tgctctataa aatttgtcgt tatgtgtgtg gtccagatat acatattttg 180 aaaatgccta agcgggatgc cccatggcgt ttaatgtcgg gtacccctaa ggttagtcgc 240 tcgtctaatt atgtccctcc tgatggattg ggccgtaaat ttgataagtc ttctacatgg 300 gccaacaggc ccatgtacag aaagcccagg atatatcgga ccgtaaggtc tgccgatgtt 360 cctcgaggct gtgaagggcc ttgcaagatt cagtcgtttg agcagcgtca cgatatctct 420 catactggga aggtgatgtg tatctcagat gttactcgcg gtaatggcat tacccatcgg 480 gttggtaaac gtttttgcgt gaagtccgtg tatatattag ggaaggtctg gatggacgat 540 aacatcaagc tcaagaacca cactaacagc gttatgttct ggttagttag ggataggagg 600 cccagcggaa cggctatgga ttttggtcac ctcttcaaca tgtttgacaa tgagcctagt 660 accgccactg tgaagaacga tcttagagat cgtttccaag tgctgcacag gtttcatgct 720 aaggtgactg gtggtcagta tgcaagcaac gagcagacgt tggtgaagcg tttctggcgg 780 gtgaatcagc gtgtaacata taataatcag gaggcagctc ggtatgaaaa ccatacggag 840 aacgccttaa tgttgtatat ggcatgtaca catgcctcta accctgtgta tgctactctt 900 aagatccgga tctattttta tgattcggtg ttaaattaat aaattttgaa ttttattgaa 960 taattctcaa gtacatgatt tacatatgat ttatctgttg cgaagcgaac agctctgatt 1020 acattattaa tgcaaataac acctaaccta tctaaataca ataagactaa atatttaaat 1080 ctatttaagt aattcgtccc agaagctcga actgatgtcg tccagatttg gtagttgagg 1140 aatgctttgt gtagattcaa cgccttcctc aggttgtggt tgaaccgtat ttggatgtgg 1200 tatatcctgg tgttggtgta aattgggtcc tctacactga gtatcgtgaa atagagggga 1260 tttggtactt cccagataaa aacggaattc tctgcctgat ccacagtgat gctctcccct 1320 gtgcgtgaat ccatggttgg cgcagtcgat gtgttggtag agtgagcagc cacagtttag 1380 gtctatcctc tttcgccgaa tcctggactt tgcaatcttg tgtttaggct tgatagaggg 1440 tggagttgag gaagatgaat tttgcattgt ggagtgtcca ggctttcagg gctgcgtttt 1500 cctctttgtc gaggaaagct ttatagctgg ctccctctcc tggattgcag agcacgattg 1560 atggtatccc acctttaatt tgaactggct ttccgtattt acagtttgat tgccagtcct 1620 tttgggcccc aatcaactct ttccaatgct tcatctttaa atattgcgga gtaacgtcat 1680 caatgacgtt atattccact tcatttgagt aaaccctagg attgaaatct aggtgtccac 1740 tcaaatagtt atgtgggcct aaggcacgag cccacatcgt cttccccgtt cttgagtcac 1800 cctcgatgat tatactaata ggtctctccg gccgcgcagc gacacccatt ccaaaataat 1860 catcagccca ctcttgcatc tcgtctggaa cgttcgtgaa ggaagagagt ggaaacggag 1920 gaacccacgg ttccggagcc ttagcgaata tcctgtctag gttactagac aggttgtgat 1980 attgaaaaag aaactctttg gggagcttct ctttaataat tcgcatggcc tcttccttcg 2040 aagaggcatt tagggcctct gcggcagcgt cgttagctgt ttgctgacct cctctagcag 2100 atctgccgtc gatctggaat tctccccatt cgattgtatc tccatccttg tcgacatagg 2160 acttgacgtc ggtgcttgac ttagctccct gaacgttcgg atggaaatgt gttgacctag 2220 ttgaggatac caggtcgaag aatcggcaat tttgtgtttt gaatttgcct tcgaactgga 2280 taagcacgtg gagatgatat tccccatttt cgtgcaattc tcttgcaatt ttgatatact 2340 ttttattagt cggagtgttc aactgtaata gttgctctag ggtttcttct ttggacaaag 2400 aacaatgggg atatgttaga aaataatttt tagaatttat aagaaacttt tttggaagtg 2460 agggcatttt tgtaaatata gtaggtatac ccaattgagc tctcttcaaa aactctgagg 2520 aattgggtat actgggtcct tatttatact agaaggtcct atagaacttt caatcgcatc 2580 cgctcacgtg gcggccatcc gtataatatt 2610 //