ID DQ347947; SV 1; circular; genomic DNA; STD; VRL; 2594 BP. XX AC DQ347947; XX DT 29-JAN-2006 (Rel. 86, Created) DT 29-JAN-2006 (Rel. 86, Last updated, Version 1) XX DE Tomato severe leaf curl virus isolate Rioverde-SLP2 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato severe leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2594 RA Mauricio-Castillo J.A., Monreal-Vargas C.T., de la Torre-Almaraz R., RA Alpuche-Solis A.G., Arguello-Astorga G.R.; RT "First Report of Tomato severe leaf curl virus in Mexico"; RL Unpublished. XX RN [2] RP 1-2594 RA Monreal-Vargas C.T., Arguello-Astorga G.R.; RT ; RL Submitted (02-JAN-2006) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica, A.C., Camino a la Presa San Jose 2055, San Luis Potosi, SLP RL 78231, Mexico XX DR MD5; 560dd7fb4ef7ac653b4c7eaa121953f0. DR EuropePMC; PMC2974675; 20958988. XX FH Key Location/Qualifiers FH FT source 1..2594 FT /organism="Tomato severe leaf curl virus" FT /segment="DNA-A" FT /isolate="Rioverde-SLP2" FT /mol_type="genomic DNA" FT /country="Mexico" FT /db_xref="taxon:92963" FT gene 186..941 FT /gene="AR1" FT CDS 186..941 FT /codon_start=1 FT /gene="AR1" FT /product="coat protein" FT /note="CP; capsid protein; encapsidation of viral genome; FT AV1" FT /db_xref="GOA:Q2L8C9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q2L8C9" FT /protein_id="ABC74535.1" FT /translation="MPKRDAPWRLMAGTPKVSRSSNQSPRTGTGPKFDKAHAWVNRPMY FT RKPRIYRAWRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWRVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSVLN" FT gene complement(938..1336) FT /gene="AL3" FT CDS complement(938..1336) FT /codon_start=1 FT /gene="AL3" FT /product="replication enhancer protein" FT /note="REn; AC3" FT /db_xref="GOA:Q2L8D3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2L8D3" FT /protein_id="ABC74538.1" FT /translation="MDSRTGESITVDQAENSVFIWEVPNPLYFTIISVEDPIYTNTRIY FT HIQIRFNHNLRKALSLHKAYLNYQIWTTSVQVSGTNYLSRFKYLVLLYLDRLGVVCINN FT VIRAVRFATDRSYVNHVLENHSIKFKFY" FT gene complement(1083..1469) FT /gene="AL2" FT CDS complement(1083..1469) FT /codon_start=1 FT /gene="AL2" FT /product="transactivation protein" FT /note="TrAp; transcriptional regulator of late genes; FT silencing supressor; AC2" FT /db_xref="GOA:Q2L8D2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2L8D2" FT /protein_id="ABC74537.1" FT /translation="MQNSSPSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYLHIDCANH FT GFTHRGEHHCGSGREFRFYLGGTKSPLFHDNQCRGPNLHQHQDIPHPNTVQPQPQEGAE FT STQSVPQLPNLDDISSSFWDELLK" FT gene complement(1426..2460) FT /gene="AL1" FT CDS complement(1426..2460) FT /codon_start=1 FT /gene="AL1" FT /product="replication initiation protein" FT /note="Rep; RCR-initiator protein; rolling-circle FT replication initiator; AC1" FT /db_xref="GOA:Q2L8D1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2L8D1" FT /protein_id="ABC74536.1" FT /translation="MPRNPNLFRLAAKNIFLTYPHCDIPKDEAIEMLQNLPWSVVKPTY FT IRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPRRSANFHPNAQAAKDTNAVQN FT YITKEGDYCESGQYKVSGGTKSNKDDVYHNAVNAASAGEALDVIRAGDPKTFIVSYHNV FT KANIERLFQKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRDAAARPERPISIIIEGES FT RTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDITPQYLKMKHWKELIGAQKD FT WQSNCKYGKPVQIKGGVPTIVLCNPGEGSSCITFLEKEENKALKDWTLHNAKFISLNST FT LYQA" FT gene complement(2016..2381) FT /gene="AL4" FT CDS complement(2016..2381) FT /codon_start=1 FT /gene="AL4" FT /product="AL4" FT /note="AC4" FT /db_xref="UniProtKB/TrEMBL:Q2L8D0" FT /protein_id="ABC74539.1" FT /translation="MKLLKCFKICHGQSSNQRTYESPERNTQMDFRTSTVSSNSPGSPT FT SRMLDFSTSLTPEGLPIFIQTHRQPKTPTPSRITSPKKVIIVNPDNTRCLGVQNQTKTT FT FTTTPSMQLVLERLSTL" XX SQ Sequence 2594 BP; 640 A; 563 C; 630 G; 761 T; 0 other; accggatggc cgcgattttt tttggacctg gcccactatc agaaattgcg ttgggccttc 60 ctggataaag ttaaccaatc agtacacgtt tgggtagtct aattattact aacttggtca 120 ccaagttgtt ttatggtcta taaatttgtc gttatgtgtg tggtccaacc atgcaaatag 180 tgataatgcc taagcgtgat gccccatggc gcttaatggc gggtacccct aaggtgagtc 240 ggtcctctaa ccagtctccc cggactggta ctgggcctaa atttgataag gcccatgcct 300 gggtaaacag gcccatgtat aggaagccca ggatatatcg ggcttggaga acgcccgatg 360 ttccaagagg ctgtgaaggt ccatgtaagg tccagtccta cgagcaacga cacgatatct 420 cccacgtggg gaaagtcatg tgcatatccg atgtcacacg tggtaatggt atcacccacc 480 gtgttggtaa gcggttctgt gttaagtctg tgtatatcct cggtaagata tggatggacg 540 agaacatcaa gctgaagaac cacacgaaca gtgtcatgtt ctggttagtg agggaccgta 600 gaccctatgg tacgcctatg gatttcggcc aggtgttcaa catgtttgac aatgagccca 660 gcactgccac ggtcaagaac gatctacgcg atcgttatca ggtcatgcac aagttctatg 720 gcaaggtgac aggtggacag tatgccagca acgagcaggc tatagtcaag cggttctgga 780 gggtcaacaa ccatgtggtc tacaatcacc aagaggctgg caagtatgag aatcacacgg 840 agaacgcgtt gttattgtat atggcgtgta ctcatgcctc taaccctgtg tatgctaccc 900 ttaagatccg gatctatttt tatgattcgg tattaaatta ataaaatttg aattttattg 960 aatgattttc taatacatga tttacatacg atctgtctgt tgcgaagcga acagctctga 1020 taacattatt aatgcaaaca acacctaacc tatctaaata caataagact aaatatttaa 1080 atctacttaa gtaattcgtc ccagaaactt gaactgatgt cgtccagatt tggtagttga 1140 ggtacgcttt gtgtagactc agcgccttcc tgaggttgtg gttgaaccgt atttggatgt 1200 ggtatatcct ggtgttggtg taaattgggt cctctacact gattatcgtg aaataaaggg 1260 gatttggtac ctcccagata aaaacggaat tctctgcctg atccacagtg atgctctccc 1320 ctgtgcgtga atccatggtt ggcgcaatcg atgtgcaggt agaacgagca gccacagttt 1380 aggtctatcc tctttcgacg aatcctggac tttgcaattt tgtgcttagg cttgatagag 1440 ggtggagttg agggagatga attttgcatt gtggagtgtc caatctttta gtgctttgtt 1500 ttcctctttt tcgaggaaag ttatacagct ggacccttct cctggattgc agagcacgat 1560 tgtcggaact ccccctttaa tttgaactgg cttcccgtat ttgcaatttg attgccagtc 1620 cttttgggcc ccaatcagct ctttccaatg cttcatcttt aaatattgcg gagtgatgtc 1680 atcaatgacg ttatattccg cttcatttga gtaaacccta gaattgaaat ctaggtgtcc 1740 actcaaataa ttgtgtgggc ctaaggcacg cgcccacatt gtctttcccg tcctcgattc 1800 accctcgatg attatactta taggtctctc cggccgcgca gcggcatccc taccaaaata 1860 atcatctgcc cattcttgca tctcgtccgg aacgttcgtg aacgacgaga gtggaaacgg 1920 aggaacccat ggttccggag ccttctgaaa gagccgctcg atgttagctt tgacgttatg 1980 gtagcttaca atgaacgtct tgggatctcc ggcccttata acgtcgagag cctctccagc 2040 actagctgca ttgacggcgt tgtggtaaac gtcgtctttg tttgattttg tacccccaga 2100 caccttgtat tgtccggatt cacaataatc accttctttg gtgatgtaat tctggacggc 2160 gttggtgtct ttggctgcct gtgcgtttgg atgaaaattg gcagaccttc tggggtgagt 2220 gaggtcgaaa aatctagcat ccttgatgtt ggacttcccg gagagttgga tgagacagtg 2280 gaggtgcgga aatccatctg cgtgttcctc tctggcgact cgtatgtacg ttggtttgac 2340 gactgaccat ggcagatttt gaagcatttc aatagcttca tctttgggga tatcacaatg 2400 tggatatgtt aagaaaatat ttttggcagc tagacgaaat aaattagggt tccgtggcat 2460 ttttgtaaat atgagccagg acaccagggg gagctctctc taaaactcta tgttgctggt 2520 gtcctggtgt cccatttata ctaaaaccct ctggggggac accaagggca aattcggcca 2580 tccgcaataa tatt 2594 //