ID DQ347945; SV 1; circular; genomic DNA; STD; VRL; 2609 BP. XX AC DQ347945; XX DT 16-FEB-2006 (Rel. 86, Created) DT 16-FEB-2006 (Rel. 86, Last updated, Version 1) XX DE Chino del tomate virus isolate Sinaloa segment A, complete sequence. XX KW . XX OS Chino del tomate virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2609 RA Mauricio-Castillo J.A., Mendez-Lozano J., Perea-Araujo L., RA Arguello-Astorga G.R.; RT "First report of Chino del Tomate virus infecting soybean in Sinaloa, RT Mexico"; RL Unpublished. XX RN [2] RP 1-2609 RA Mauricio-Castillo J.A., Mendez-Lozano J., Perea-Araujo L., RA Arguello-Astorga G.R.; RT ; RL Submitted (01-JAN-2006) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica, Camino a la Presa San Jose 2055, San Luis Potosi, SLP 78231, RL Mexico XX DR MD5; f07cba12a1e85200649c6adf40d54bc2. XX FH Key Location/Qualifiers FH FT source 1..2609 FT /organism="Chino del tomate virus" FT /segment="A" FT /host="soybean" FT /isolate="Sinaloa" FT /mol_type="genomic DNA" FT /country="Mexico" FT /db_xref="taxon:47838" FT gene 193..948 FT /gene="CP" FT CDS 193..948 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="capsid protein" FT /db_xref="GOA:Q2F1F7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2F1F7" FT /protein_id="ABC75107.1" FT /translation="MPKRDLPWRSIAGTSKVSRNANYSPRGGSGPRVNKAAEWVNRPMY FT RKPRIYRAWRTPDVPRGCEGPCKVQSYEQRHDISHTGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILDKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYGKVTGGQYAGNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVCATLKIRIYFYDSIMN" FT gene complement(945..1343) FT /gene="AL3" FT CDS complement(945..1343) FT /codon_start=1 FT /gene="AL3" FT /product="replication enhancer protein" FT /note="interacts with Rep protein to enhance viral DNA FT replication" FT /db_xref="GOA:Q2F1F6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2F1F6" FT /protein_id="ABC75110.1" FT /translation="MDSRTGEFITVPQAENGVYIWEIQNPLYFKMYRVEDPPYTRTRVY FT HVQIRFNHNLRRALHLHKAYLNFQVWTTSITASGSTYLARFRHLVMLYLNQLGVISINN FT VIRAVRFATDRSYVNHVLENHSIKYKLY" FT gene complement(1090..1479) FT /gene="AL2" FT CDS complement(1090..1479) FT /codon_start=1 FT /gene="AL2" FT /product="TrAP" FT /note="transactivator protein; viral transcription factor FT and silencing supressor" FT /db_xref="GOA:Q2F1F5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2F1F5" FT /protein_id="ABC75109.1" FT /translation="MRSSSPSHPPSIKTAHRQAKRRAIRRRRIDLRCGCSIYFHIGCTG FT YGFTHRGIHHCTSGGEWRVYLGDTKSPLFQDVQSRGSTVYEDQGLPRSDTVQPQPQESV FT ASPQSLPELPSLDDIDHSFWVDLFS" FT gene complement(1391..2476) FT /gene="Rep" FT CDS complement(1391..2476) FT /codon_start=1 FT /gene="Rep" FT /product="replication initiation protein" FT /note="rolling-circle replication initiator protein" FT /db_xref="GOA:Q2F1F4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2F1F4" FT /protein_id="ABC75108.1" FT /translation="MPSVKRFKVSAKNYFLTYPQCSLTKDDALSQLQTLKTPVNKKFIK FT ICREFHENGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYI FT DKDGDTVEWGEFQIDGRSARGGQQSANDSYAKALNAGSVQSAMTVLKEEQPKDFVLHNH FT NIRSNLERIFAKAPERWVPPFQLSSFTNVPDEMQDWADDYFGRSSAARPERPISIIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNTKVYSNEVEYNVIDDVAPHYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPAIVLCNPGEGSSYKDFLDKEENASLRNWTIKNAIFITLT FT SALYQDSAQASQEEGHQEEAD" FT gene complement(2062..2325) FT /gene="AL4" FT CDS complement(2062..2325) FT /codon_start=1 FT /gene="AL4" FT /product="AL4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q2F1F3" FT /protein_id="ABC75111.1" FT /translation="MKMGSLISTFSSNSKASTSARIIDSSIWSPQPGQHISIRTYRELN FT PAPTSSPTSTRTEIRLNGENSRSTADLLEEVSNLLTIHMPRR" XX SQ Sequence 2609 BP; 651 A; 592 C; 619 G; 747 T; 0 other; accggatggc cgcgcgattt tttccctctc acgcgctcac gctcctcttt aatttgaatt 60 aaagctctcc gctttagtct cgtccaatca tgtaacgttt gacgagctta gatattttca 120 actacttcgg gcctaagttg ttgggtttcg ttataaatta aagaggcttt ggcccactat 180 ctgtaattca aaatgcctaa gcgcgatctt ccatggcgct cgatcgcggg aacttcaaag 240 gtgagtcgca atgccaatta ttcccctcgt ggaggaagtg ggccaagagt taacaaggcc 300 gctgaatggg taaacaggcc catgtacaga aagcccagga tctatcgggc ttggaggacg 360 cccgacgttc ctagaggctg tgaaggccct tgcaaggtcc agtcttacga gcagagacat 420 gatatctcac atacaggtaa ggtcatgtgt atatccgacg tgacacgtgg taatggtatc 480 acccaccgtg tgggtaagcg attctgtgtt aagtccgtgt acattctcga taagatatgg 540 atggacgaga acatcaagct gaagaaccac acgaacagtg ttatgttctg gttggtcagg 600 gatcgtagac cctatggcac tcctatggat ttcggtcaag tgttcaacat gttcgacaac 660 gagcccagca ctgccacggt gaagaacgat cttcgcgatc gttttcaggt catgcacaag 720 ttctatggca aggtgacagg tggacagtat gccggcaacg agcaggctat agtcaagcgc 780 ttctggaagg tcaacaatca tgtcgtctac aatcatcagg aggctggcaa atacgagaat 840 catacggaga acgctttgtt attgtatatg gcgtgtacac atgcctctaa ccctgtatgt 900 gcaacgctta agatccggat ctatttttat gattcgatca tgaattaata aagtttgtat 960 tttattgaat gattttccag tacatgattt acatacgatc tgtctgtcgc aaatcgaaca 1020 gctctaatta cattgttaat agaaataacg cctaactgat ttaaatacaa cataactaag 1080 tgtctaaatc tagctaaata agtcgaccca gaagctgtga tcgatgtcgt ccagacttgg 1140 aagttcaggt aggctttgtg gagatgcaac gctctcctga ggttgtggtt gaaccgtatc 1200 tgaacgtggt agaccctggt cctcgtatac ggtggatcct ctactctgta catcttgaaa 1260 tagaggggat tttgtatctc ccagatatac acgccattct ccgcctgagg tacagtgatg 1320 aattcccctg tgcgtgaatc cataccccgt gcagcctatg tggaagtata tggagcaccc 1380 gcacctcaaa tcaatccgcc tcctcctgat ggccctcctc ttggcttgcc tgtgcgctgt 1440 cttgatagag ggcggatgtg agggtgatga agatcgcatt cttgatggtc caatttctca 1500 gtgatgcgtt ttcctctttg tcgaggaaat ctttatagct ggaaccctca ccaggattgc 1560 aaagcacgat tgccgggatc cctcctttaa tttgaactgg tttgccgtac ttgcaattcg 1620 actgccagtc cttctgggcc cccagaagtt ctttccagtg ctttagcttt agatagtgcg 1680 gtgcgacgtc atcaatgacg ttatactcca cttcgtttga atacaccttt gtgttgaagt 1740 ccagatgtcc actgagataa ttatgtgggc ctaatgcacg agcccacatc gttttccctg 1800 tcctcgaatc accttccacg atgatactaa taggtctctc cggccgcgca gcggaactcc 1860 ttccaaaata atcatccgcc caatcttgca tctcgtccgg aacgttagtg aaagaggaga 1920 gttgaaacgg aggaacccac cgttccggag cctttgcgaa tattctctct aggttggagc 1980 ggatgttatg attatgcagg acaaaatctt ttggctgctc ttccttcaaa accgtcatgg 2040 cagattgaac agatcctgca ttcaacgcct tggcatatga atcgttagca gattgctgac 2100 ctcctctagc agatctgccg tcgatctgga attctcccca ttcaaccgta tctccgtcct 2160 tgtcgatgta ggacttgacg tcggagctgg atttagctcc ctgtatgttc ggatggaaat 2220 gtgttgacct ggttggggag accagatcga agaatctatt attcgtgcac tggtacttgc 2280 cttcgaattg gatgagaacg tggagatgag gctccccatt ttcatggaac tctctgcaaa 2340 ttttgataaa tttcttgtta actggcgttt ttagtgtttg taattgggaa agtgcgtcat 2400 ctttagtaag agagcactgg ggatatgtga ggaaatagtt tttggctgag actttgaaac 2460 gcttaaccga tggcattttt gtaataagaa gggtgtactc cgattgagct ctcaaacttc 2520 tgcgctatat tttggggtaa aggagacaat atatactaga actcttagta gcacttaagc 2580 gacacgtggc ggccatccga tataatatt 2609 //