ID DQ344640; SV 1; linear; genomic RNA; STD; VRL; 6364 BP. XX AC DQ344640; XX DT 26-MAY-2006 (Rel. 87, Created) DT 07-AUG-2007 (Rel. 92, Last updated, Version 3) XX DE Black raspberry necrosis virus segment RNA2, complete sequence. XX KW . XX OS Black raspberry necrosis virus OC Viruses; Riboviria; Picornavirales; Secoviridae. XX RN [1] RP 1-6364 RX DOI; 10.1094/PHYTO-97-0044. RX PUBMED; 18942935. RA Halgren A.B., Tzanetakis I.E., Martin R.R.; RT "Identification, Characterization, and Detection of Black raspberry RT necrosis virus"; RL Phytopathology 97(1):44-50(2007). XX RN [2] RP 1-6364 RA Halgren A.B., Tzanetakis I.E., Martin R.R.; RT ; RL Submitted (28-DEC-2005) to the INSDC. RL Botany & Plant Pathology, Oregon State University and USDA-ARS, 3420 RL Orchard Ave., Corvallis, OR 97330, USA XX DR MD5; bc62e38822236330f3de8e86ffb080f4. XX FH Key Location/Qualifiers FH FT source 1..6364 FT /organism="Black raspberry necrosis virus" FT /segment="RNA2" FT /isolate="BRDaV-1" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:367301" FT 5'UTR 1..223 FT /note="5' non-coding region (5' NCR)" FT CDS 224..5425 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q1G658" FT /db_xref="UniProtKB/TrEMBL:Q1G658" FT /protein_id="ABC71320.1" FT /translation="MLWFLIYFILSLVILLLSFYSLVLIPYNSPAYVFVELRKKHLRFR FT FTCSVRYSFRSLLVEQVIGALFWIALIYLVRVVQLSFRLLFRVSARSVARCISLSKSFY FT VMSSSNIQEAYDKAAAAFNDSSSSIAQAIALSKEKAWLARPDECEAAITTMLSKGKIYV FT TNNIRNRLLWRSVPSAVMGHFNTGFVPAVSTKESKEPTISNVVLSDAVKKYLADVGYTT FT TQYKTSATGKIRGVTSQQPAAIVRVDVMSLRTESLVSQSNAGVTLSLALDGRAKKPEAA FT ILGGHLHFTKDDAISTSLFYPRFSLSSQEKNLDECVQVWSTSQGYNLKPGSIASATCSA FT MVGEVTTQMGATSMIAPVMDQLEKAKKQTMSLGALPIHPYRPTENNVDEVVMNWEGATT FT SLDFIGSSAGTSEWAPRNSEGNRSIRFSGLKAIDGPGTSNEKHFITQEELLEEENPREP FT RERPNVRPRPARNYDDDFVEEGDGMPMQPIVIAKEHIHFPDSDYLKEDVHIYTGSVSVP FT QVSTDTAVLAFLNLFEGMGLDDSKDPFISKLKLASLVVPKFKVRVRFSLPSMYSCPIII FT SWDEGRCIGDTYALEDLVQLPFCVVGPTVGQAYTDFSFETYGRTGAFSLARKISCSAGT FT LYFSCMPHDFATLEGKISLHYEIWLGQGTIISQGLFPQLPSQKATLVTGLTERTYCANL FT VGNTHLGRMVLDHNTDTEKFFLLAVRPGVGAISSDGKTIYGSNMSALCANWAFWNGTAC FT ISVNITARQNVAGQLSIYTLPPGYNTRKLREKDCYHWPREVITFNGSQVYKFKALANSW FT LGACSTVGGAFVDQNDQNGNTLSFAVFINAGPSSCAGFSTQVDVLFTLTNIEDLTLSER FT ITPQTHRAPRPTANYAPRKPWESKVLATQTEEIVEQGFGIQPPNFHRLYTLRNLKQTSE FT ETWILPFTLAEPKRSNWKNCKVYNYESPELAADKEPLVIIDSTNPYRLLVQGSCFYSCH FT LEASVSLSSTKKKASAVTVGILKNPFYHKEIGRAQKDGDVFGGGLRDATSILPGNIAIL FT TQPERENIRSCCRPDLEKSGRAFLDTPSFLCIIIPANSDVTEVETGYSVKGPLSLYGIG FT LPSPVDIPPTSKDRYMPHLTVGNPVIATTSENSALMPIGWWDSLKEEKLWSKYRKHCEI FT REPTKEHVQYLERKFRDNCFRVYNVYEPDAELKSRMHLKFTKPKFTPGQDYALNMQFWL FT GSSRDNMYELIWRFDDSYPEGYIISYSTNMGNGNWDKHTQWMSNLDRFAPRDEVDFGIQ FT RHSDHSMTIFVDGIKAGEVRGCFPLGNILAGWEYQVDLRFALVRKGSIPFSFRPTGTLR FT DVYINDLPSPMSLVRVETTSIQSNSSMYPLEPVQVGVAPAQLDYYLSNNIGFAKRGATK FT NTTQSNRKRVEKHGKLEEVVGEEEGGTRGEEVPTQEILSASPHLGSTIPVAYNTNIKGK FT GKGIEPMERVRIGSSWVRERNGRRRPEPMYPYGRLEKLDNSLRNEPQTEKHHHFKWRGI FT EVSEGTDYHVCYRIGRTPFYGCCERDETPVNTIPLAIREEAEESVRRRVLEALNPDELF FT EQYSHMYSQDILMEACSLTIQDYPPGNIKYVDVLDGVLKEFGVNIRDYRYKENCGCCGR FT KEMVLQCNKGWRLNALRRGGFSIREGRRTGLDYLGSPSWTGGVIGITSDLTPVVTRHVF FT GELVDQVARSMLAENQNNVPGYLKELEKFHPGALGL" FT mat_peptide 224..1195 FT /product="movement protein" FT mat_peptide 1196..3958 FT /product="large coat protein" FT mat_peptide 3959..5422 FT /product="small coat protein" FT 3'UTR 5426..6364 FT /note="3' non-coding region (3' NCR)" XX SQ Sequence 6364 BP; 1680 A; 1461 C; 1585 G; 1638 T; 0 other; atcaaagcgc actgaaccca agtttactga aaatttacat ttcacattta ctggttacgt 60 tcttttcttt caccctacca cgttggaatt tgctaattcc aacaatcaca tttacttgaa 120 cagtttactc caagctcact gaaccatttt cactgatctc catcttgtgt gaacaggtac 180 atctggtcag agcatttcat ccattctatt ctgtgaggat gtcatgcttt ggtttttgat 240 ctacttcatc ttgtcacttg tgattctgct gctctcattt tactcgctgg tgctcattcc 300 atacaattca ccagcttatg tgtttgttga gttgcgtaag aagcatctca ggtttcgttt 360 tacttgttcc gttcgctact ctttccggtc cttgcttgtt gagcaagtta tcggagcctt 420 gttttggata gcccttatct acctggttag ggttgttcag ctctcatttc gattattgtt 480 tcgtgtatca gcacgttcag tagcgagatg catatccttg tctaaatcat tctatgtcat 540 gtcgagctct aacatccagg aagcctatga caaggctgca gcagccttca atgactctag 600 ctcatctata gcgcaagcta ttgctctctc gaaagagaag gcatggttgg cacgaccaga 660 cgagtgcgag gctgcaatca ccaccatgct cagcaaaggg aaaatctatg ttacaaataa 720 catcagaaat agattactgt ggcgctctgt cccatcagct gtcatgggcc acttcaacac 780 tgggttcgtc ccagcggtgt cgacaaaaga atcaaaagaa cccaccatct caaacgtggt 840 gctcagcgat gccgtcaaga aatatctggc cgatgttgga tacactacaa cccagtacaa 900 aaccagtgct accgggaaga tacgaggtgt caccagccag cagccggcag ccatagtgcg 960 tgtcgacgtc atgtcactcc ggacggaatc tctagtttca caatcgaatg ctggcgtgac 1020 attatcattg gcgcttgatg ggagggccaa gaagccagaa gcagccatac tcgggggaca 1080 tctgcacttc acaaaggatg acgccatttc cacatctctg ttctatcctc gttttagcct 1140 atcatcacaa gagaagaatc tagatgagtg cgtccaagtt tggtccacat cacaaggtta 1200 taacctcaaa ccaggttcta tcgcttcagc cacctgttca gcaatggtag gagaggtcac 1260 cacccagatg ggtgctacct ccatgatagc ccccgtgatg gatcagcttg agaaagcaaa 1320 gaagcaaact atgtcactcg gggctcttcc tattcaccct tacagaccca cggagaacaa 1380 tgtggatgag gtcgtaatga actgggaggg ggcaacaaca tcgctggatt ttatcggaag 1440 ttcagccgga actagtgagt gggctccgag gaattcagaa gggaatcgct caattagatt 1500 ttcgggtctt aaagcgatcg atggaccggg cacctccaat gagaagcatt tcatcacgca 1560 ggaggaactt ttggaggagg aaaacccaag ggaaccgagg gagagaccca atgttagacc 1620 tcgccctgcc aggaattatg atgacgattt cgtggaggaa ggggatggca tgccaatgca 1680 gcccattgtg atagctaagg aacacatcca ctttccggat agtgattatc tcaaggagga 1740 tgtacacatt tacactggga gtgtgtctgt gccccaggtc tctactgata ccgctgttct 1800 tgcatttctt aatctctttg agggtatggg cttggatgac tcaaaggacc cgttcatcag 1860 caaactcaaa ctggcaagtc ttgtggtacc aaaattcaaa gttcgagtca ggttttcatt 1920 gccatcgatg tactcttgcc ctattatcat atcttgggac gagggtcgtt gtataggtga 1980 cacgtatgcg ctggaagatt tggtgcagtt gcctttctgt gtcgttggcc caaccgttgg 2040 tcaggcttac accgattttt cttttgagac ttatgggaga accggtgctt tctcacttgc 2100 gcggaagatt tcctgtagcg ctggtacact ttatttctcg tgcatgcccc atgattttgc 2160 aacactggaa gggaagatta gcttgcatta tgagatatgg ttaggccagg gaaccatcat 2220 cagccagggc ctctttccac aattgcccag tcagaaggca acgcttgtca ccggattgac 2280 cgagcgaacc tattgtgcta atttggtggg caacacccat cttggaagaa tggtcctgga 2340 tcacaacacc gatacagaaa aattcttttt gctggctgtt agaccaggtg ttggggccat 2400 ctcgagtgat gggaaaacca tttatggttc gaatatgtca gccctttgtg ccaattgggc 2460 tttctggaat ggaacagcct gcatttcggt gaacatcacg gcgcgacaga acgtcgcagg 2520 tcaactctcc atttacacac taccaccagg gtacaacacg agaaagctcc gggaaaagga 2580 ctgttatcat tggccaaggg aggtcatcac tttcaacgga tcacaggtct acaagttcaa 2640 ggcgctcgcc aattcgtggc tcggggcctg ctcgaccgta gggggagctt ttgtggacca 2700 gaatgatcaa aatgggaaca ctctctcttt tgcagtattt ataaacgctg gtccctccag 2760 ctgtgctgga tttagcacgc aggtcgatgt gctcttcacg ctcaccaaca ttgaggatct 2820 cactctatca gagcgcatca ctccacaaac tcacagggct ccaagaccta ctgccaacta 2880 tgcacctagg aagccctggg agagcaaagt tctggccaca cagactgagg agattgttga 2940 gcaaggtttt ggtattcagc cccccaactt tcataggctt tacactctgc gcaatctcaa 3000 gcaaacaagt gaagagacct ggatcctgcc attcacattg gccgagccga agaggagtaa 3060 ctggaagaac tgcaaagtct acaattatga gtctcctgag ctggcagcgg ataaggagcc 3120 acttgtcatc attgattcca ccaatccata ccggctttta gtgcaaggga gttgcttcta 3180 tagttgtcat ttggaagcat ctgtctcatt gtccagtact aagaagaagg cgagcgctgt 3240 aactgttggc attctcaaga accctttcta ccacaaggaa atagggagag cacaaaagga 3300 tggcgacgtt tttggtgggg gattaaggga tgcgacttct attctcccgg gaaatattgc 3360 tatactcact caaccagaga gggagaacat ccgttcttgt tgtcgcccag atctcgagaa 3420 gtcaggaaga gcttttcttg acacaccatc ttttctttgc atcataatac cagccaatag 3480 tgacgtcacg gaagtggaga cagggtactc tgtcaaaggg cccttgtcgt tgtatgggat 3540 cggtctgcct tccccagtcg acataccacc cactagtaag gaccgataca tgccgcatct 3600 cacagttggc aatccagtta ttgctaccac atctgaaaac tcagctctaa tgcccattgg 3660 atggtgggat tccctcaagg aggaaaaatt gtggtcaaag taccggaagc attgtgagat 3720 cagggaaccc actaaggaac atgtgcagta tctggagagg aaattcaggg ataattgttt 3780 cagggtttac aatgtttatg agcctgatgc cgaactcaag tcccgcatgc acctgaaatt 3840 caccaaacct aagttcacac caggtcagga ctatgcacta aacatgcagt tctggttggg 3900 cagttctagg gacaacatgt atgaacttat atggcgcttt gacgattctt accctgaggg 3960 gtacattata tcctactcca ccaacatggg caatgggaac tgggacaagc acactcaatg 4020 gatgtccaat ttggataggt ttgcgcccag ggatgaagtt gattttggaa tccagaggca 4080 ctcggatcac agcatgacca tttttgtgga tggcattaaa gcaggagaag tacgtggctg 4140 ctttcccctt ggaaacatac tggcgggttg ggaatatcag gtggatttga gatttgcttt 4200 ggttaggaag gggtccattc ctttctcttt ccggccaact gggactctgc gggacgtata 4260 cataaatgat ctcccaagcc ctatgtcact ggtgagagtg gagaccacat ccatacagag 4320 taattcttcc atgtatccac ttgaaccggt acaggtggga gtggctcctg cacagctgga 4380 ctactatctc tccaacaata ttggctttgc caagagaggt gcgaccaaga acaccacaca 4440 atcgaacaga aagcgcgtcg agaagcatgg gaagctggaa gaggtcgtcg gagaagagga 4500 agggggcaca agaggagagg aggtacccac tcaggaaata ctttctgcta gccctcacct 4560 tggatccacc attccggttg cttacaacac taacatcaag ggaaaaggca aaggcattga 4620 accaatggaa cgagtcagaa taggctcatc ctgggttcgg gagagaaatg gaaggaggcg 4680 gccggaacct atgtacccct atgggagact tgagaagctg gacaattctc ttaggaatga 4740 gcctcagact gaaaagcatc atcatttcaa atggcggggt atcgaggtat cggaaggcac 4800 tgattaccac gtgtgctaca ggataggccg gacgcccttt tatggctgtt gcgaacgaga 4860 cgaaacgcct gtcaatacaa tacccctggc aatacgggag gaagctgagg aaagcgtgag 4920 gcgcagggta cttgaagccc tcaatcctga tgagctcttt gaacagtact cacatatgta 4980 ctcgcaggac atcttaatgg aagcctgtag tttgacgata caagattacc cgccaggcaa 5040 catcaagtac gtggatgtgt tggatggtgt actcaaggaa tttggagtga acattcggga 5100 ctacaggtac aaagagaact gcgggtgttg tgggagaaag gaaatggtcc tccaatgtaa 5160 taaaggatgg cgcctaaatg cactcagacg gggtggtttc tcgatccggg aagggagaag 5220 gaccgggttg gattatcttg gatcaccatc gtggactgga ggcgtcattg gcatcactag 5280 tgacttaacc ccggttgtca cacgccacgt atttggtgag cttgtggatc aagtagccag 5340 aagtatgcta gctgaaaatc aaaacaacgt gcccggttac ctcaaggagc tcgagaaatt 5400 ccatccgggc gctttaggtc tgtaggttcc ttagtagtta gtagttttgg atcaaactat 5460 aaatgatatc cggttttccc ccccgcctta aaggggtttg ataaggataa tgtctggtgg 5520 accacctgtt cttcattgaa taggccactt ggtgtacgtc agacttaaat gatctggcgg 5580 tcctatcata ttccaggaat taacctggtt taggggcaac ccgtatgtag ccttgaatag 5640 acgaggcaaa tagctctgca cgctgctatc aaaataagga tcgtgtgccc agtcccggtt 5700 agaaggacac ccacatttca taggacgagt accaattggg aggaagggta aggagtattc 5760 atccgtgtaa cgctctgtga actgaatccc catactgaga aagtctgaac tttttgtggt 5820 aagtttgttg gaactttaaa ccaatagccc aaccccggtt agaagggtcg agtggttcta 5880 cgttagtgga ccagaacctc gggagagttt tcctaggatc cagaccgaat tctggcagct 5940 tgcatggcaa gatacactgt agagtggagg cttgataacc ctcctgcagt aggcaaggca 6000 atggcttttc tgtcggcggt agcgtcccgg cccttgttta tgttcgcccg atcagtgaaa 6060 ggccgattcg tatatcgtta aatacgaaat cgggagattt atcctaggat ccagaccgaa 6120 ttctggcagc ttgcatggca agacgatacc aaatatcgca aatttggaaa ctgggaagtc 6180 ggtccagtgt gaataccgac ctttgttggc agcaattttc tgtcaagtat ggtgcgcttt 6240 tgtaccacaa aatggacact tgtccacaaa aagattttac ttagttgtaa tgtcactaat 6300 tttcttgcgg ggaaatagat cgttaaaggt agatttctcc gtattgttaa ccttagttag 6360 atgt 6364 //