ID DQ339117; SV 1; circular; genomic DNA; STD; VRL; 2758 BP. XX AC DQ339117; XX DT 22-DEC-2006 (Rel. 90, Created) DT 18-JAN-2007 (Rel. 90, Last updated, Version 2) XX DE Tomato leaf curl Rajasthan virus - [India:Rajasthan:2005] segment A, DE complete sequence. XX KW . XX OS Tomato leaf curl Rajasthan virus - [India:Rajasthan:2005] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2758 RA Sivalingam P.N., Malathi V.G., Varma A.; RT "A new begomovirus infecting tomato in Rajasthan, India"; RL Unpublished. XX RN [2] RP 1-2758 RA Sivalingam P.N., Malathi V.G., Varma A.; RT ; RL Submitted (21-DEC-2005) to the INSDC. RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute, RL Pusa Road, New Delhi, Delhi 110 012, India XX DR MD5; c956d4fa96cb5936301be95361023669. XX FH Key Location/Qualifiers FH FT source 1..2758 FT /organism="Tomato leaf curl Rajasthan virus - FT [India:Rajasthan:2005]" FT /segment="A" FT /mol_type="genomic DNA" FT /country="India:Rajasthan" FT /note="transmitted by whiteflies" FT /db_xref="taxon:420254" FT gene 144..500 FT /gene="AV2" FT CDS 144..500 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:A1XCP3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A1XCP3" FT /protein_id="ABC70687.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLAEKNYSPDTLGYDLIRDL FT ISVIRAKNYVEATSRYNHFHARFEGTPPSQLRQPVCEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCP" FT gene complement(295..852) FT /gene="AC5" FT CDS complement(295..852) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:A1XCP4" FT /protein_id="ABC70693.1" FT /translation="MPLPQHLITISVHILHSSSARLVVKHIEHLSKVLWLINRTSVTNK FT KKHDTIRVILGLDVLIHPYLPQNVNRLNTKTLTNSMGQPSTASDITDTHDLTYMDYIVS FT GLKRLDLTWAFASSRDIWTSVHPVHPGLSVHGPVRPCFCFGDADNGGSSTAHIRAVEVE FT TAAYLRSGRGNDYICWSLRHNF" FT gene 304..1074 FT /gene="AV1" FT CDS 304..1074 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:A1XCP5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A1XCP5" FT /protein_id="ABC70688.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1071..1481) FT /gene="AC3" FT CDS complement(1071..1481) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:A1XCP6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A1XCP6" FT /protein_id="ABC70691.1" FT /translation="MITDSRTGEYITADRTESGVYTWEIRNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFQIWTGLRPQIGIFLRVFKTQVLKYLDRLGVIGI FT YNVIRAVYHVLDNVLERTIDVWTSYDIKLDIY" FT gene complement(1216..1620) FT /gene="AC2" FT CDS complement(1216..1620) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:A1XCP7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A1XCP7" FT /protein_id="ABC70690.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYVSIN FT CHDHGFTHRGVHHCGSYREWRIYLGNSKSPVFQNFETRQQALPNTARHNQDSNTVQPQP FT AESPGTSQVFSNFPNLDGLTPSDWDFLESL" FT gene complement(1523..2608) FT /gene="AC1" FT CDS complement(1523..2608) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:A1XCP8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A1XCP8" FT /protein_id="ABC70689.1" FT /translation="MAAPNRFKINAKNYFLTYPRCSLTKEEALSQLQTLETPTSKKFIK FT ICRELHEDGSPHIHVLIQFEGKYQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINMGNKDDALKVLKELAPKDYVLQFH FT NLISNLDRIFQPPSEVYVSPFSISSFDRVPPELVDWVSSNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFMCNNGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPPEEEEEHSQEAS" FT gene complement(2275..2451) FT /gene="AC4" FT CDS complement(2275..2451) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A1XCP9" FT /protein_id="ABC70692.1" FT /translation="MGLRISTSSSNSKGNTSAKITDSSTWFPQVGQHISIRTFRELNRH FT RTSKHISTKMETF" XX SQ Sequence 2758 BP; 747 A; 580 C; 608 G; 823 T; 0 other; accggatggc cgcgattttt tttgtgggtc ccttaacgca ttaactgaca aggacatgcg 60 aaccaatcat atgacacgct caaagcctaa ttgtttattg gtcccttatt taaacttcgt 120 ccccaagtag tttcttttgc actatgtggg atccattgtt gaacgagttt cccgaaaccg 180 ttcacggttt tagatgtatg ttagcagtta aatatctgca gttagcagaa aagaattatt 240 ctcctgacac attaggttac gatttaatta gggatttaat ttcagttatt agggctaaaa 300 attatgtcga agcgaccagc agatataatc atttccacgc ccgcttcgaa ggtacgccgc 360 cgtctcaact tcgacagccc gtatgtgagc cgtgctgctg cccccattgt ccgcgtcacc 420 aaagcaaaag catgggcgaa caggcccatg aacagaaagc ccaggatgta caggatgtac 480 agaagtccag atgtccctag aggatgcgaa ggcccatgta aggtccagtc gtttgagtcc 540 agacacgatg tagtccatat aggtaaggtc atgtgtatca gtgatgtcac tcgcggtact 600 gggctgaccc atagagttgg taagcgtttt tgtgttaagt ctgtttacgt tttggggaag 660 atatggatgg atgagaacat caagaccaag aatcacacga atagtgtcat gttttttctt 720 gttcgtgacc gacgtcctgt tgataagcca caagactttg gagaggtgtt caatatgttt 780 gacaacgagc ctagcactgc tactgtgaag aatatgcaca gagatcgtta tcaagtgttg 840 aggaagtggc atgcaactgt caccggtgga caatacgctt caaaggaaca ggcattagtg 900 aagaagtttg ttagggttaa taattatgtt gtttataatc aacaagaggc cggcaagtat 960 gagaatcata ctgaaaacgc attaatgttg tatatggcct gtactcacgc atcaaatcct 1020 gtgtatgcta ctttgaaaat ccggatctat ttctatgatt cggtcacaaa ttaataaata 1080 tcaagtttta tatcatatga agtccataca tcaattgttc gctccaatac attatctaat 1140 acatgataaa ctgcccttat tacattataa attcctatga cacctaacct atccaggtac 1200 ttaaggacct gggtcttaaa gactctcaag aaaatcccaa tctgagggcg taagcccgtc 1260 cagatttgga aagttagaaa acacttgtga agtcccaggg ctttccgcag gttgtggttg 1320 aactgtattt gaatcttgat tatgtcgtgc tgtgttagga agggcctgct gtcgtgtttc 1380 aaaattttga aatacagggg atttcgaatt tcccaagtat atacgccact ctctgtacga 1440 tccgcagtga tgtactcccc tgtgcgtgaa tccgtgatca tggcagttga tcgacacgta 1500 atacgaacaa ccacacggaa gatcaactcg cctcctgcga atgctcttct tcttcttctg 1560 ggggagcgat gttttcgcga ccggaataga gtggttcttc gagtgtgatg aagactgcat 1620 tcttgattgc ccactgcttc agtgctgcat ttttttcttc gtccagatat tccttatagc 1680 tgctgtttgg accattattg cacatgaaga tagtgggaat tccaccttta atcatgactg 1740 gctttccgta cttcgtgttg ctttgccagt cacgctgggc ccccatgaat tctttaaagt 1800 gctttagata atggggatca acgtcatcaa tgacgttgta ccaggcatca ttgttataca 1860 cctttgggct tagatctaga tgtccacaca agtaattgtg tgggcctaaa caacgagccc 1920 acattgtttt gcccgttcta ctatccccct ctatgactat gcttatgggc cgaaaaggcc 1980 gcgcagcggc acacaccaca tttgacgaga cccaatcgac gagttcagga ggaactctgt 2040 cgaaggaaga aattgaaaat ggagaaacat aaacctcaga aggaggctga aaaatgcgat 2100 ctaaattact aattaaattg tgaaactgca gaacataatc ttttggggct aattccttta 2160 atactttcaa tgcatcgtct ttatttccca tgttaatcgc cttcgcatat gcatcgttgg 2220 ccgtctgctg accaccacga gcagatcgtc catcgatttg gaaaacaccc cattctagaa 2280 cgtctccatc tttgtcgata tatgctttga cgtccgatgc cgatttagct ccctgaatgt 2340 tcggatggaa atgtgctgac cgacttgggg aaaccaagtc gaagaatctg ttatttttgc 2400 actggtattt cccttcgaat tggatgagga cgtggatatg cggagaccca tcctcgtgaa 2460 gctctcgaca gatcttgatg aatttcttcg aagtcggggt ttctagggtt tgcaattggg 2520 aaagtgcctc ttctttagtt agagagcacc tgggataagt gagaaaataa tttttggcat 2580 ttattttaaa ccgattgggg gctgccatat tgacttggtc aattggtgtc tctcaactct 2640 ttctatgtat cggtgtattg gagtcctata tatatggaga ctctaattgc ataaatgtaa 2700 atattttact ttaattcaaa atcttcacgc tccaaaaagc ggccatccgt ataatatt 2758 //