Dbfetch
ID DQ336353; SV 1; circular; genomic DNA; STD; VRL; 2622 BP. XX AC DQ336353; XX DT 19-JAN-2006 (Rel. 86, Created) DT 22-JUL-2006 (Rel. 88, Last updated, Version 2) XX DE Tomato chlorotic mottle virus segment DNA-A, complete sequence. XX KW . XX OS Tomato chlorotic mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2622 RX DOI; 10.1111/j.1365-3059.2006.01395.x. RX AGRICOLA; IND43821638. RA Fernandes J.J., Carvalho M.G., Andrade E.C., Brommonschenkel S.H., RA Fontes E.P.B., Zerbini F.M.; RT "Biological and molecular properties of Tomato rugose mosaic virus (ToRMV), RT a new tomato-infecting begomovirus from Brazil"; RL Plant Pathol. 55(4):513-522(2006). XX RN [2] RP 1-2622 RA Andrade E.C., Ambrozevicius L.P., Carvalho M.G., Fontes E.P.B., RA Zerbini F.M.; RT "Pseudorecombination among begomoviruses from tomato and Sida sp."; RL Unpublished. XX RN [3] RP 1-2622 RA Andrade E.C., Ambrozevicius L.P., Carvalho M.G., Fontes E.P.B., RA Zerbini F.M.; RT ; RL Submitted (19-DEC-2005) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 626ab726ae475e2f724027405c9f8cad. XX FH Key Location/Qualifiers FH FT source 1..2622 FT /organism="Tomato chlorotic mottle virus" FT /segment="DNA-A" FT /isolate="[Brazil:Minas Gerais-Igarape1:1996]" FT /mol_type="genomic DNA" FT /country="Brazil" FT /db_xref="taxon:172391" FT gene 198..953 FT /gene="CP" FT CDS 198..953 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q2LCT3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2LCT3" FT /protein_id="ABC68297.1" FT /translation="MPKRDAPWRHMSSTVKISRGFNSSPRAGVGPRSNKASDWVNRPMY FT RKPWIYRIYRTPDVPRGCEGPCKVQSFEQRHDISHTGKVMCVSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVLNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVLNHQEAGKYDKHTDNAL FT LLYMACTHASNAVYATLKIRIYFYDSITN" FT gene complement(950..1348) FT /gene="Ren" FT CDS complement(950..1348) FT /codon_start=1 FT /gene="Ren" FT /product="replication enhancer protein" FT /db_xref="GOA:Q2LCT2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2LCT2" FT /protein_id="ABC68300.1" FT /translation="MDSRTGELITAHQAENGVYIWEISNPLYFKMYKVEDILYTRTRVY FT HVHIRFNHNMRRVLGLHKAYLNFQIWTTSLRASGMTYLNRFKYLLMLYIDQLGVISINN FT VIRAVRFATDKQYVNAVLENHSIKFKLI" FT gene complement(1095..1484) FT /gene="Trap" FT CDS complement(1095..1484) FT /codon_start=1 FT /gene="Trap" FT /product="trans-activating protein" FT /db_xref="GOA:Q2LCT1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2LCT1" FT /protein_id="ABC68299.1" FT /translation="MHNSSFSTPPSIKVQHRAVKKRAIRRRRIDLQCGCSNFVHIDCAG FT HGFTHRGTHHCTSGREWRVYLGNIKSPLFQDVQSRGHTIHEDQSLPRPYPVQPQHEESI FT GSSQGLSQLPNLDDIPESFWDDIFK" FT gene complement(1426..2481) FT /gene="Rep" FT CDS complement(1426..2481) FT /codon_start=1 FT /gene="Rep" FT /product="replication-associated protein" FT /db_xref="GOA:Q2LCT0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2LCT0" FT /protein_id="ABC68298.1" FT /translation="MPPPKHFRVNSKNYFLTYPHCSLSKEEALSQLLAIQIPVNKLFIR FT VARELHEDGQPHLHVLIQFEGKFVCTNNRLFDLVSPTRSAHFHPNIQGAKSSSDVKAYV FT EKDGDFSDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQHH FT NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQDWVDDYFGRDAAARPERPISIIIEG FT DSRSGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHRKDLIGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKYFLEKDQNSALDTWTKHNAQFIFLN FT SPLYQSSTSGC" XX SQ Sequence 2622 BP; 699 A; 554 C; 588 G; 781 T; 0 other; accggatggc cgcgcgattt ttttaaggcc cattcagttt gggccgctct tttgggcctt 60 cacctttaat tttattgata gtaaatttgg cccaatcatg atgcatttga caagctaaga 120 tatttacaac tacttaacgc ccaagttgca taacggctat aaattaaacg tggtagtgtc 180 gttaacttta attcaaaatg cctaagcgcg atgccccatg gcgccacatg tcaagtacag 240 ttaagattag ccggggcttt aatagttctc ctcgagcagg agttgggccc cggtctaata 300 aggcctctga ctgggtaaac aggcccatgt acagaaagcc ctggatatac cggatttaca 360 gaacccccga tgttccaagg ggctgtgaag gcccatgtaa agtccaatcg tttgaacagc 420 gtcacgatat ctcccatact ggtaaggtga tgtgtgtctc ggatgtcact cgtggtaacg 480 gtattacaca ccgtgtgggt aagcgtttct gtgttaagtc tgtgtatatt cttggtaaga 540 tatggatgga tgagaacatc aagttgaaga accacacaaa cagtgccatg ttttggttgg 600 tgagggaccg tagaccgtat ggtaccccaa tggattttgg ccaggtgtta aacatgttcg 660 acaacgagcc tagcactgcc actgtgaaaa acgatcttcg tgatcgtttt caagttatgc 720 acaagttcta tgctaaggtt actggtggac aatacgcaag caacgagcag gcgctggtca 780 agcggttctg gaaagtcaac aatcatgtcg tcttaaacca tcaagaagcc gggaagtacg 840 ataaacatac ggacaacgcc ctgttattgt atatggcatg tactcatgcc tcaaacgccg 900 tgtatgcaac tttaaaaatt cggatctatt tttatgattc gataacaaat taaattaatt 960 tgaattttat tgaatgattc tcgagtacag catttacata ttgtttgtct gttgcgaatc 1020 gaacagctct aattacatta ttaattgaaa taacgcctag ctgatcaata tacaacatta 1080 gtaaatattt aaatctattt aaatatgtca tcccagaagc tctcagggat gtcgtccaga 1140 tttggaagtt gagataagcc ttgtgaagac ccaatactct cctcatgttg tggttgaacc 1200 ggatatggac gtggtagact ctggtcctcg tgtatagtat gtcctcgact ttgtacatct 1260 tgaaataaag gggatttgat atttcccaaa tatacacgcc attctctgcc tgatgtgcag 1320 tgatgagttc ccctgtgcgt gaatccatgt cctgcgcaat caatgtgtac gaaattggag 1380 cacccgcact gcaaatcaat tcgtcttctt cgtatagctc tcttcttaac agcccgatgt 1440 tgaactttga tagagggggg agttgagaaa gatgaattgt gcattgtgct ttgtccaagt 1500 atctaatgct gagttttgat ccttctcgag gaaatattta tagctggccc cttcgccagg 1560 attgcaaagc acgatgcatg ggataccacc tttaatttga accggctttc cgtatttaca 1620 gtttgattgc caatcctttt gggccccaat caagtctttc ctgtgcttta actttagata 1680 gtgcggtgcg acatcatcaa tgacgttata ctgcacatcg tttgagtaga cctttgaatt 1740 gaaatcgagg tgaccactca agtaattatg ggaccctaat gcacgtgccc acattgtttt 1800 gccacttcga gaatcaccct cgattattat actgataggt ctctccggcc gcgcagcggc 1860 atctctcccg aaatagtcat ctacccaatc ttgcatctcg acaggcacgt tagtgaacga 1920 cgagagggga aacggaggaa cccaaggttc tggagccttt gcgaaaatac gctctaaatt 1980 tgacctaatg ttatgatgtt gaagcacgaa atctttgggt tgttcctccc ttaatatatt 2040 gagtgcttcc atgacagatc ctgcgttgag aaccttggcg tacgtgtcgt tggcagattg 2100 ctgacctcct ctagctgatc tgccatcgat ctggaaaact ccatgatcac tgaagtctcc 2160 gtctttctcc acgtatgcct tgacatctga cgagctctta gctccctgaa tgttcggatg 2220 gaaatgtgct gaccttgttg gggatacaag gtcgaataat ctgttgtttg tgcagacgaa 2280 tttcccttcg aactgtatga ggacgtgcaa atgaggttgc ccatcttcat gtaattctct 2340 ggcaacacga atgaacaact tattaacagg tatttgtatg gctaataatt gggaaagtgc 2400 ttcttctttg gaaagagaac agtgtggata tgtcagaaaa taatttttgg aatttactcg 2460 gaaatgttta ggcggtggca tatttgaaat aatagttggg caccgattgg ggactctcta 2520 aacttgctct agcaattggg gactggggtc ctatatatac tagaaccctc tataggactt 2580 tcaatctcgt tcacacacgt ggcggccatc cgatataata tt 2622 //