Dbfetch
ID DQ328878; SV 1; linear; genomic RNA; STD; VRL; 7316 BP. XX AC DQ328878; XX DT 07-MAR-2006 (Rel. 87, Created) DT 15-AUG-2008 (Rel. 96, Last updated, Version 4) XX DE Ippy virus strain Dak An B 188 d segment L, complete sequence. XX KW . XX OS Mammarenavirus ippyense OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-7316 RX DOI; 10.1016/j.virol.2006.01.026. RX PUBMED; 16494913. RA Emonet S., Lemasson J.J., Gonzalez J.P., de Lamballerie X., Charrel R.N.; RT "Phylogeny and evolution of old world arenaviruses"; RL Virology 350(2):251-257(2006). XX RN [2] RP 1-7316 RX DOI; 10.1016/j.mib.2008.06.001. RX PUBMED; 18602020. RA Charrel R.N., de Lamballerie X., Emonet S.; RT "Phylogeny of the genus Arenavirus"; RL Curr Opin Microbiol 11(4):362-368(2008). XX RN [3] RP 1-7316 RA Emonet S., Lemasson J.-J., Gonzalez J.-P., de Lamballerie X., Charrel R.; RT ; RL Submitted (02-DEC-2005) to the INSDC. RL Unite des Virus Emergents, Faculte de Medecine de Marseille, Universite de RL la Mediterranee, 27 boulevard Jean Moulin, Marseille 13005, France XX DR MD5; df60185d46771680f6949ac1a96f3cad. DR EuropePMC; PMC2680969; 19478873. DR EuropePMC; PMC3321973; 20350390. DR EuropePMC; PMC4900801; 27278118. XX FH Key Location/Qualifiers FH FT source 1..7316 FT /organism="Mammarenavirus ippyense" FT /segment="L" FT /strain="Dak An B 188 d" FT /mol_type="genomic RNA" FT /db_xref="taxon:3052308" FT gene 149..454 FT /gene="Z" FT CDS 149..454 FT /codon_start=1 FT /gene="Z" FT /product="Z protein" FT /db_xref="GOA:Q27YE2" FT /db_xref="InterPro:IPR003224" FT /db_xref="InterPro:IPR024183" FT /db_xref="InterPro:IPR038485" FT /db_xref="UniProtKB/Swiss-Prot:Q27YE2" FT /func_characterised="identical sequence" FT /protein_id="ABC71142.1" FT /translation="MGQNQSRDKQKAIQNQPKDTGNRADIIPDATGMGPEFCKSCWFER FT RSLVACNNHYLCMNCLTLLLSVSERCPICKLPLPQKLKLTSSPSAPPSPSPPPYSP" FT gene complement(619..7245) FT /gene="L" FT CDS complement(619..7245) FT /codon_start=1 FT /gene="L" FT /product="L protein" FT /db_xref="GOA:Q27YE1" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR026382" FT /db_xref="UniProtKB/Swiss-Prot:Q27YE1" FT /func_characterised="identical sequence" FT /protein_id="ABC71143.1" FT /translation="MEESLRETKLLISRYLRQDERIARQKLAFLGQSEPRSLLIEGLKL FT LSLCIEIDSCDTNCCTHNTEGQSVENFLFQNHILCPSLPLVVPDGMKLNGNILIILECF FT VRSNPTNFQQKYQEDSVKLDSLKGDLERAGISLIPIIDGRTSYYNSLMEEWVCDQFRHN FT LFKLLEFEQENNALFEESEYLRLCESLNVSGGRASGAQGLHSLLDCRGEHYNEILKACH FT IGIDPSIGGVELKGQIENLYQVFRQKLKKGVIKHQFRKVDQKSLLKEYCEMYKGIGICG FT VEETTVDALAAELPNISPILRYIHLRIDSESNAEVNEISNLPTGLRSAFNKVKSLKVLN FT TRRKLLLLIDTIILMSHCYVRELFPTLCERDWLGSSFFSVGDRLVSVGAIQHDLSKWLK FT RRLKANGGVGQKSTELHKMINTMIQKSSKALGDVGLSFESYGVSFDFLNKVGLEEIMRF FT KIVGVTPTISYIKTNQQPPIPLREFSAEDDSDLKMLSSLSLSLVNSMKTSSTVKTRQNA FT MGRERYRVVQCKECYYQELGNEYRDLVLLYQKTGEGSKCYSVNSKRVGEICSFYADPKR FT YFCPIFSENVITKVIDTMMTWLMGIVELEDSLRDIKKLTKMILLVILCQPSKRSQKLLQ FT NLRYFIMAFVSDYHHVELFDKLREELITDAEFFLFKLLGKILTILLNDEVSTMLNNRFK FT FILNISYFCHFITKETPDRLTDQIKCFEKYLEPKIQFGSLTVNPKETPTDEEKDDILHG FT VNMFLSKKTCDEVDDPPSKKPGVSKKVFSLMLSAFNSGLLFKESELKKGMKDPLEDSGS FT ATALDLASNKSVVINKYTKDGRVLDYNYDKLVSVAVCQLSEIFSRKGKYLLNKEDYDYK FT IQEVLSSLVIGSSKSEQPEEILDVDSDYMDQLKASVERVLDQYKPNRGVRSQNNDKSVN FT DLKIIVEDELSRRLILGELSYHLVEDFDKGLLSENFYKEVCEKAFNNKDFRTKYFYDSE FT AGLCPIEKMTQALATRTYMSGEYFHCFKSLLLQMDANKLSGKYSHYKSQNLNFRFDHGR FT LMDDSRISERESNSEALSKALSLVNCLTSALKNLCFYSQESPSSYTETGPDTGRMKFSL FT SYKEQVGGNRELYIGDLRTKMFTRFVEDYFESYTKQLEGSCLNNEKEFEKAILGMKLGV FT SLAHASYSLDHSKWGPMMCPFLFLMLYRNLSPKLKGTEVELKGCDNISTILSWHIHKLV FT EVPFNVVTAMMRSYIKRKLGIMKDTSQTITESLFFSEFERGVIPSHFSSVLDMGQGILH FT NTSDFYGLISERFINYALRLVSGNPIEAYTSSDDQISLFSHKFTELMDTDPEEFLIYLE FT FHNYLSSLLNKFISPKSVVGRFVAEFKSRFYVWGDEVPLLSKFVAASLHNIKCKEPHQL FT AETVDTIIDQAVANGVPVSVCNEVQKRTLRLLEFSKYPIDPFLLHSDSDVKDWVDGNRG FT YRIMRVIEQTLPEGTASVRSLLRILYNKLKSNELHEEFASAYLSQNRSETLVGLAELMG FT VKPPSTEDLMICWLNLTACHPLRMVLRQKVIYPSALNLEEEKVPTLIRTLQNKLSSGFT FT RGAQKLLSEAVNKSAFQSSIASGFVGLCKTLGSKCVRDPERESHYIKSIIQYLQTHCNV FT KPLNKGHLNLWVYESKTDDTQSASVKPWQIELLRPLLWDYLCIALSTSLEIGPWVLGEP FT VFKVKSDFWKPRPCDYFPLRPAHNRILEDRIGMNHIIHAVRRLYPEMFEKHLLPYMSDL FT AAMKLKWSPRIKFLDLCVTLDVNCEALSLISHVVKWKREEHYIVLSDDLLVSHDRKHTT FT LMDETVVSTSDVADNFLKQIYFESFVKPFVATSRTLGSFSWFPHRSSLPQGEGIERLGP FT FSTFIEKVVFKGIERPMYRYDLFMGYSWLDYEIELAHLNQSQLIASGLTEESCFEDVDQ FT FWHYLSTLKVGSVKLSKTVRLTQKTQGKLQGQKFSVHLNFTGFITNSCTFVPKQLEVLY FT SGPVDEHFVIDCWSLLKSDREFKAGASEWFVHSDVVDAYISTASPSSEAYPLDVWLEPD FT LLELSVSDISKVGPEVNIVPLVVEDGHLLELKEKVAIINPVILDQDIEVFINELKEDHW FT DLLVCKFADILKHRQCCNLYLINVDILTIALRILNDKAEEFISKSMQEIDQWFDFKGYS FT LCFSKSRRQVMRHSSTGTMRLKGRLCQPAFYVEVVEEID" XX SQ Sequence 7316 BP; 2198 A; 1651 C; 1258 G; 2209 T; 0 other; cgcaccgggg atcctaggca atttggtgtg tcatttctat accaatcaag cctgatttcc 60 aaagcactca cacaagtccc gcaaccacca cacctacaag gacccgccaa cagtcccgcc 120 aaatcgctag gccatcaccc aacccagcat gggacagaac caaagcagag acaaacaaaa 180 ggccatccaa aatcagccca aagacacagg gaacagagca gacatcattc cagatgcaac 240 aggcatgggg ccagagtttt gcaagagctg ctggtttgag cgtaggagtc ttgttgcttg 300 taacaatcac tacctttgca tgaactgcct gacattgtta ctaagtgtct cagaaagatg 360 tccaatttgc aaactgcctc tgccacaaaa actgaaacta acatctagtc caagtgcccc 420 tccatcaccc agtccaccac catactcccc ttaagcccca aacaacagcg gacccaaaca 480 aaaaacaaga aacaaaaaac aaaccaaaaa caaaggaaaa ggccaaaacc aaaaaacaac 540 cacaaccacc ccctcccccg caagggggag gggggccccg ccgggccccc cctccccccc 600 cctgggggga ggagatgtct agtctatctc ttcaacaact tcgacataaa atgccggttg 660 gcagagtcta cccttgagcc tcattgtgcc cgttgatgag tgcctcatca cttgtctcct 720 acttttacta aaacacagtg agtagccttt aaaatcaaac cattgatcaa tctcttgcat 780 tgattttgaa atgaactcct ctgctttatc attaaggatt cttagtgcaa tggttaagat 840 gtccacatta ataaggtaca aattgcaaca ttgtctatgt ttcaatatat ctgcaaactt 900 gcacaccaac aagtcccaat gatcttcctt cagttcatta atgaaaactt caatatcttg 960 atccagaatg acagggttga tgatggctac cttttctttg agttctaaca gatgcccatc 1020 ttcaacaaca aggggcacaa tattgacttc tggtccaact ttcgagatgt cagatacgga 1080 gagttcaagc aaatctggtt ccaaccatac atcaagtgga taagcctcag aagatggaga 1140 agctgttgaa atgtaagcat ctacaacatc tgaatgaacg aaccactcag atgctccagc 1200 tttaaattcc ctatctgact tcaataatga ccagcagtca atcacaaagt gctcatccac 1260 agggcctgag tacagcactt ctaattgctt aggtacgaaa gtacacgagt ttgttataaa 1320 tccggtaaaa ttcaaatgaa ctgagaactt ctggccttgt agcttccctt gagtcttctg 1380 tgttagtcta acagtttttg acaacttaac agaccctacc tttaaagtgg agagataatg 1440 ccagaattga tcaacatctt caaaacagct ttcctctgtc agcccagatg caattagctg 1500 ggactgattg aggtgtgcca actctatctc gtaatccaac catgaatagc ccatgaataa 1560 atcatatcta tacataggcc tctctatgcc tttaaataca actttctcaa tgaatgttga 1620 aaaaggccct agtctttcaa tgccctcacc ttgaggtagt gatgatctgt gagggaacca 1680 agaaaatgat ccaagtgtcc tagaggttgc aacaaagggt ttgacgaaag actcaaaata 1740 gatttgtttc aggaagttgt cagcaacatc agaagtactc accactgtct catccataag 1800 tgtagtatgt ttacgatcat gagaaactaa aagatcatca gacaaaacaa tgtaatgctc 1860 ttctcttttc catttaacca catgtgaaat taaggacagt gcctcacaat tcacatcaag 1920 agttacacac aaatccaaaa acttaattct tggagaccac ttcaacttca tggcagccaa 1980 atcgctcatg taaggcaaaa gatgcttctc aaacatctca gggtagagcc ttctaactgc 2040 atgaattatg tggttcattc caatcctatc ttccaaaatt cggttatgag caggcctcaa 2100 aggaaaatag tcacagggtc ttggtttcca aaagtcagat ttcaccttga acacgggctc 2160 acctaggacc cagggaccaa tctctagaga agttgacaat gctatgcaga ggtagtccca 2220 tagaagaggc ctcaagagtt caatttgcca gggttttaca gaggctgact gtgtatcatc 2280 agtctttgat tcataaaccc ataagtttaa gtggcccttg ttcagaggtt taacattgca 2340 gtgtgtctgt aagtattgaa ttattgattt tatgtaatgg ctctcccttt caggatcacg 2400 aacacacttg cttcccaagg ttttgcaaag tccaacaaat cctgaggcaa tgctactttg 2460 aaatgcactt ttattcacag cttccgacag caacttttga gcacctctag taaatcctga 2520 agatagcttg ttttgtaatg tcctgatcag tgttggaact ttttcctctt ctaaatttaa 2580 agcagaagga taaataacct tctgacgcaa taccatccta agtggatggc aggctgtcaa 2640 atttaaccaa cagatcatta gatcttcagt agaagggggt tttacaccca tcaattcagc 2700 caaaccaact aatgtttctg acctattttg tgataagtaa gccgatgcaa actcctcatg 2760 aagctcattt gatttcaatt tgttgtaaag aattcttagt agggacctga cactcgcagt 2820 cccctctggt aatgtttgtt caatcaccct cattattctg tatcccctat tcccatcgac 2880 ccaatccttg acatctgaat cactgtgaag caaaaatggg tcaataggat atttactaaa 2940 ctcaagtaat ctcaaagttc gtttctgaac ttcgttgcaa actgacactg gtacaccatt 3000 ggcaactgct tgatcaataa tcgtgtccac agtttcagcc aattggtgtg gttccttgca 3060 tttgatatta tgtagtgatg ctgccacaaa tttgctcaac agtggaactt catcacccca 3120 gacataaaat cttgatttga attcagctac aaatctgcca acaacacttt ttgggcttat 3180 aaacttgttt aaaagactac ttaaatagtt gtggaattct agataaatga ggaattcttc 3240 tggatcagta tccatcagtt ctgtaaattt atgactaaac aaagaaattt ggtcatcact 3300 agatgtataa gcttcaatgg ggttacctga cactaatctc agtgcatagt taatgaacct 3360 ctcacttatc aaaccataaa aatcagatgt gttgtgcagg attccctgcc ccatatctag 3420 tacagaggaa aagtgagatg ggatgacccc tctttcaaat tcagagaaga acaaactttc 3480 agtgatcgtc tgagaagtgt ctttcatgat ccctaatttt ctcttgatat aagacctcat 3540 cattgctgtg acaacattga aaggcacctc taccagctta tgaatatgcc aagataaaat 3600 tgttgatatg ttgtcacagc cttttaattc tacttcagtt cctttgagtt tgggactcaa 3660 atttctgtat aacatcaaaa acaagaatgg gcacatcatg ggtccccatt tactatgatc 3720 caatgagtaa gaggcatgag ccaatgaaac acccaatttc atgccaagaa tagctttttc 3780 aaattccttc tcattgttaa ggcagctacc ctctaattgt tttgtataag attcaaagta 3840 atcttcaaca aatctagtaa acattttcgt tctcaaatca ccaatgtata gctctctatt 3900 tccaccaact tgctctttat atgatagaga gaatttcatc ctgccagtgt ccggacctgt 3960 ctctgtatat gaactaggag attcttgact ataaaaacaa aggtttttaa gtgcagatgt 4020 taaacagttg actagtgaca atgccttgct gagggcttct gagttacttt ctctttcact 4080 tattctcgaa tcatccatca atctgccatg atcaaaccgg aaatttagat tctgtgattt 4140 gtaatgtgaa tattttcctg acaatttatt tgcatccatc tgaagtaata atgacttgaa 4200 gcagtgaaaa tattcccctg acatgtatgt ccttgttgct aatgcttgtg tcatcttttc 4260 tattggacag aggcctgctt cagagtcata aaagtatttt gttctaaaat ctttattgtt 4320 aaaagctttc tcacacactt ccttgtaaaa attctcactt agaaggcctt tgtcaaagtc 4380 ctcaaccaga tggtatgata attctcctaa tattaatcgt ctacttaatt catcttcaac 4440 aatgatcttt aagtcattga cactcttatc attgttctgg gacctcacgc ctctgtttgg 4500 tttgtattga tctaacactc tttccacaga ggcttttagc tgatccatat aatcagagtc 4560 aacgtctaaa atttcctcag gttgctcaga tttagatgag cctataacca ggctggataa 4620 aacctcttga atcttatagt cataatcttc tttgttcagc aagtatttac cctttctaga 4680 aaagatttct gacaactgac aaacagcaac actaacaagt ttatcataat tgtaatccaa 4740 tactctgcca tctttagtgt atttattgat caccacactt ttattgctgg ccaaatccag 4800 cgcagtggca gatccactgt cttcaagagg gtctttcata cccttcttta attctgattc 4860 tttgaaaagt agccctgaat tgaatgcaga gagcatcagt gaaaaaactt ttttggatac 4920 gccaggcttc ttggatggtg gatcatccac ttcatcacag gtttttttac tcaagaacat 4980 gtttacacca tgcagaatat catctttttc ttcatcagtc ggggtttctt tgggattgac 5040 tgttaatgag ccaaattgaa ttttaggttc caaatatttt tcaaaacatt ttatctgatc 5100 tgttagtcta tcaggcgtct cttttgtgat aaaatgacag aaataagata tatttaaaat 5160 aaatttgaac ctattgttca acattgtgct tacttcatca ttcagcaaaa ttgttaagat 5220 tttccccaaa agcttaaaca agaagaactc agcatcagtg atcagttctt ccctcaactt 5280 gtcaaacaac tctacatggt ggtaatcaga aacaaatgcc atgatgaagt atctgagatt 5340 ttgaagtagt ttctgggatc tcttactggg ttgacaaaga atcactagta aaatcatctt 5400 tgtcagcttc tttatgtcac ggagactatc ctccaactcc acaataccca tcaaccaggt 5460 catcatagta tcaataacct ttgtaatcac attttcagaa aatattggac aaaaataccg 5520 tttaggatca gcataaaaag agcagatttc acccaccctc ttactattaa cagagtaaca 5580 ttttgaccct tcaccagttt tttgatagag taacacaaga tctctgtact cattccctaa 5640 ctcctgatag tagcactcct tacactgcac cactctgtac ctttctctcc ccattgcatt 5700 ctgtcttgtc ttgactgtgg aggaggtttt cattgagttt acaagggata gtgataaaga 5760 tgagagcatc tttaagtctg agtcatcttc agctgagaat tctcttagtg gaatgggtgg 5820 ctgttgattg gttttaatgt agctgattgt cggagtcact cccacaatct tgaatctcat 5880 gatttcttct aggccaactt tgtttaggaa atcaaatgag accccatagg attcaaagct 5940 gagaccaaca tcccctaaag ctttgcttga cttttgaatc atggtgttta tcatcttatg 6000 caactctgtc gacttttgtc caacacctcc attggccttc aacctacgct ttaaccactt 6060 agataagtca tgttgaatgg caccgacaga aaccagtcgg tctcccacac tgaaaaatga 6120 tgatcctaac cagtcccttt cacataaagt agggaataat tctctaacat aacaatggct 6180 cataagaatg atggtgtcta tcaataacaa cagcttcctt ctagtattga gaacttttag 6240 tgatttcacc ttgttaaagg ctgaccttaa cccagtgggt agattcgaaa tttcattcac 6300 ttcagcattt gattcactat ctatcctcag atgaatataa cgcagaatgg ggctgatgtt 6360 cggaagctca gcagccaatg catcaactgt ggtttcttct accccacaaa ttcctatacc 6420 cttgtacatt tcacaatatt cttttaacag acttttttga tccacttttc taaattggtg 6480 cttaatgact ccctttttta atttttgtct aaacacctga taaaggtttt caatttgacc 6540 tttcaattca accccaccaa tgctcgggtc aatgcctatg tggcatgcct tcagtatctc 6600 attgtagtgt tcccccctgc agtctagaag tgaatggagt ccttgtgccc ctgaggccct 6660 acctcccgac acattgagtg attcacaaag tctcagatat tctgattctt caaacaatgc 6720 attattctct tgctcaaact caagaagttt aaacaaattg tgtcgaaact gatcgcaaac 6780 ccattcttcc attagtgaat tatagtaact tgttctccca tcaatgattg gtatcagact 6840 gatcccagct ctctccaagt ctccttttaa tgaatccaat ttcacactgt cttcttgata 6900 cttctgctgg aaatttgtag gatttgacct gacaaaacat tcaagtataa ttagaatgtt 6960 accatttagc ttcatcccat ctggaaccac aagagggaga gatgggcaca gaatgtggtt 7020 ttggaataga aaattctcaa cactttgccc ttctgtattg tgtgtgcagc aatttgtatc 7080 acatgaatct atttcaatac acagagacaa cagttttaac ccctcaatga gaagggacct 7140 aggctcagac tggcccagga acgcaagctt ttgtctcgca attcgttcat cttgtcgaag 7200 gtatctagaa atgagtagct ttgtttctcg aagggattcc tccatcagaa ttcctgctca 7260 gatcacaaag cgcattagac aaatagcttg acacaatgcc taggatcctc ggtcgc 7316 //