ID DQ318818; SV 3; linear; genomic RNA; STD; VRL; 3429 BP. XX AC DQ318818; XX DT 26-DEC-2005 (Rel. 86, Created) DT 07-APR-2010 (Rel. 104, Last updated, Version 4) XX DE Strawberry necrotic shock virus segment RNA 1, complete sequence. XX KW . XX OS Strawberry necrotic shock virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-3429 RX DOI; 10.1007/s00705-010-0601-8. RX PUBMED; 20195656. RA Tzanetakis I.E., Martin R.R., Scott S.W.; RT "Genomic sequences of blackberry chlorotic ringspot virus and strawberry RT necrotic shock virus and the phylogeny of viruses in subgroup 1 of the RT genus Ilarvirus"; RL Arch. Virol. 155(4):557-561(2010). XX RN [2] RP 1-3429 RA Tzanetakis I.E.; RT ; RL Submitted (06-DEC-2005) to the INSDC. RL Botany and Plant Pathology, Oregon State University and USDA-ARS, 3420 RL Orchard Ave, Corvallis, OR 97330, USA XX RN [3] RC Sequence update by submitter RP 1-3429 RA Tzanetakis I.E.; RT ; RL Submitted (21-DEC-2006) to the INSDC. RL Botany and Plant Pathology, Oregon State University and USDA-ARS, 3420 RL Orchard Ave, Corvallis, OR 97330, USA XX RN [4] RC Sequence update by submitter RP 1-3429 RA Tzanetakis I.E.; RT ; RL Submitted (06-AUG-2007) to the INSDC. RL Botany and Plant Pathology, Oregon State University and USDA-ARS, 3420 RL Orchard Ave, Corvallis, OR 97330, USA XX DR MD5; 7349d57ab29130079e6213fb17876390. XX CC On Aug 6, 2007 this sequence version replaced gi:119721397. XX FH Key Location/Qualifiers FH FT source 1..3429 FT /organism="Strawberry necrotic shock virus" FT /segment="RNA 1" FT /mol_type="genomic RNA" FT /country="USA:Maryland" FT /db_xref="taxon:243563" FT CDS 38..3310 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:Q2PMD3" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q2PMD3" FT /protein_id="ABC47325.3" FT /translation="MDLNNYPTERRVGLPALSVDNLIADYVSNVRSDEATNVGRFLGEV FT ALRELKSQVDTSNGDFQKLNVGFRMTPDEKNALKSNFPGLDIVFRDSCYSSHSFAAAHR FT VCETLDIYNRFNTRTEKIIDLGGNYVTHAKQGRANVHSCCPILDVRDGARHTDRYISLA FT ASVEKKHRELPVDFCCHKFEECQVKAPFAMAIHSISDIPITTVAAHCVRRGVRKLIASV FT MMDPLMMIYDKGHIPLLNVTWEKVDVEESDGNFRTMISFHFDDAPGLSYSHDFNTLAKY FT MTTNQVTVNDTYSFRVERTACLSGVYIVEMTLSMTDGHSTAYLKPMQDVSCAWLSSLRK FT KVFVKLAVPISAEWFTEPFEIRWALMDEHLVRYVSEAAFRQYSKTKDPETLVQYIATML FT SSSSNHVVINGITMRSGSPIDLEEYVPLAVTFYVMAAWRYRMIAPGIEAVTTRVEKNVD FT QIDTNGHIKQEFNVVNELMKEAGLVDPNFRDVVKTAGLRMFGKKTISKTRDDVSIIHPR FT NLLKEIIYDIKRIFGLTLTGSDYNLVDGVPAHMKATDVWNVFMENLAFPSCLNVKECVN FT ELLVNHMEMVEHEKREDEKRQSFLDARDSALITIAKALEKDPTIEDGLMPILDLCDIKD FT KLTTAKNSLSLTHEAIIASDSRLSSSVVNPYADSIKEAISYFNEIEMVNTRNLRAIGTY FT LNWRAATDRNSYRALKGKNESIRVYVPFERKWYFDDRDLPQYERAMTEDGYVTLQWCNG FT GLSDNCYQSVRKYHILVVDDTCVFNSGQRMIPALEAALKMNPNFKVTIVDGVAGCGKTT FT HLKKLARMDANPDIILTSNRSSSDELKSTINCAEAMKYRIRTVDSYLMLKTWFSSDRLL FT FDECFLTHAGCIYAAATLAQVKEVIALGDTEQVPFISRLPEFRVQHHKLCGNIEVQTTT FT YRCPRDATACLKNFFYKKKTVKSASRVERSLELCPINSAVQIPRVENTLYMTHTRADKD FT ALMKIPGFVKDNIKTTHEAQGDTWDNVIMFRLSKTTGLLHSGKGPEIGSCHNLVAISRH FT RKSFRYYTVAPHDCDDQIVKCINYSKTLSSGDLDAVRLISDN" XX SQ Sequence 3429 BP; 989 A; 624 C; 788 G; 1028 T; 0 other; gtattctact tcgtattcaa agtagtacct cctgaaaatg gatttgaaca attaccccac 60 tgagagacgc gttggtcttc ctgcccttag tgttgacaat ctaattgcag attatgttag 120 caatgtgagg tcagatgaag ccaccaacgt tggtagattc ctcggtgagg ttgctttgag 180 agaattgaaa tctcaagtgg acacctcgaa tggtgatttc cagaagttaa atgtgggatt 240 ccgcatgact cctgatgaaa agaatgccct aaagtctaat tttcctggac ttgatattgt 300 ctttagggat tcttgttatt catcccatag ttttgctgcc gcacatcgtg tgtgcgagac 360 cctagatata tacaatcggt ttaacacgcg cacagaaaaa ataattgatt tgggtggtaa 420 ctatgttact cacgcaaaac aagggagagc gaatgttcat tcttgctgcc caattttaga 480 tgtgcgcgat ggtgcgaggc ataccgatag atatatatct ttggctgcct ctgttgagaa 540 gaagcacagg gaattaccgg ttgacttctg ctgtcacaag tttgaagagt gccaggttaa 600 agctcccttt gccatggcca tccattctat cagcgacatt ccaattacca ctgtggctgc 660 acattgtgta cgccgcggtg ttaggaaatt gatagcatca gtgatgatgg atccgctcat 720 gatgatttat gacaaaggtc atataccgct cctaaatgtt acttgggaga aagtggatgt 780 ggaggagtct gatgggaatt tccggacgat gatctcattt cacttcgatg atgcaccagg 840 tttaagttac tctcatgatt ttaacacgct ggcaaaatac atgactacaa atcaagtcac 900 tgtaaatgat acctactcgt ttcgagtaga gagaaccgcg tgtttatctg gagtatacat 960 tgttgagatg acgctcagta tgactgatgg tcactcgact gcatacctga agcccatgca 1020 ggatgtttcg tgcgcatggt tgtcgtcttt acgcaaaaaa gtttttgtaa aacttgcggt 1080 tcctattagt gcagagtggt ttactgaacc atttgaaatc cgctgggcac taatggatga 1140 acatcttgtg cgatatgtgt cggaggcagc tttccgacaa tattctaaaa ctaaggatcc 1200 agagacctta gttcaataca tcgccacgat gttgtcttct tcatcgaacc atgttgtgat 1260 caatgggatt actatgagga gtggtagtcc aattgatctg gaagaatatg ttcctttagc 1320 tgtcacattt tatgtgatgg ctgcatggag atatcgtatg attgccccgg gtattgaagc 1380 tgttaccaca cgcgttgaga aaaatgttga ccagattgat accaacggac acattaaaca 1440 agagttcaat gttgtcaatg agttgatgaa ggaggctggt cttgttgacc caaattttag 1500 agatgttgtg aagacagctg ggttgcgcat gtttggtaag aaaacgatat caaaaacccg 1560 ggatgatgta tctataattc accccaggaa tttgttaaag gagataatat acgatattaa 1620 acgtatattt ggtctcacac tcacaggttc cgactacaat ttagtcgatg gtgttccggc 1680 gcacatgaaa gcgaccgatg tttggaatgt tttcatggaa aatttagcat tcccatcatg 1740 tttgaacgtg aaagagtgtg ttaatgagtt gctcgttaat cacatggaga tggtcgaaca 1800 tgaaaaacgt gaggatgaga aaagacaaag tttcctggat gctcgcgatt ctgccttgat 1860 aacaattgcg aaagctttgg aaaaggatcc aacgatcgag gatggattaa tgccgatttt 1920 ggacctttgt gacatcaagg ataaacttac aactgctaag aattccttga gtttaacgca 1980 tgaagcaatc attgcgtctg actcgagatt gtcaagtagt gttgtaaatc cttatgccga 2040 ttctattaaa gaagctataa gctattttaa tgagatcgaa atggtcaata ctcgaaattt 2100 acgtgctatt ggtacgtatt tgaattggcg tgctgcgacg gaccgaaatt cctacagggc 2160 tcttaaaggg aaaaatgaat cgatcagagt ttatgttccc tttgagcgta agtggtattt 2220 tgatgataga gatttaccgc agtacgaacg agctatgacc gaagatggat atgtcacgtt 2280 acagtggtgt aacggtggac tttccgacaa ctgctatcag tctgtgagaa aataccacat 2340 tttagttgtc gatgatactt gcgtgttcaa ttctggacaa cgcatgatcc cagcattgga 2400 agcagcgttg aaaatgaatc ccaatttcaa agtgactatc gttgacggag tagccggttg 2460 tgggaagacg acacacttga agaaattagc tcggatggat gctaatccgg acataatttt 2520 gacaagtaac cgaagttcat ccgatgagtt gaagtccacg ataaactgtg cggaagcgat 2580 gaaataccgt atacgcacgg ttgatagtta cttgatgttg aaaacttggt tctcgtcaga 2640 cagattgttg tttgatgaat gttttttaac tcatgctggt tgtatttatg ctgctgcaac 2700 tttagctcaa gtaaaggaag tgattgctct tggtgatacc gagcaagttc ccttcatatc 2760 taggttgccg gagtttcgcg tacaacatca taagttatgt ggaaatattg aagttcaaac 2820 cactacttat agatgtccgc gcgatgccac tgcttgttta aagaatttct tttacaagaa 2880 gaaaacagtg aagtcggcga gtcgcgttga gcgatctctt gaattgtgtc caatcaatag 2940 tgcggttcaa attcctcgtg ttgagaatac attatatatg actcacacga gagctgataa 3000 ggatgcctta atgaaaatac ctggatttgt taaagacaat ataaaaacaa cacatgaagc 3060 ccaaggtgac acctgggata atgtgataat gtttagattg tcgaaaacaa ccggtttatt 3120 gcattctggg aaaggacctg aaattggatc atgtcacaat ttagttgcca tatctcgtca 3180 tcgaaaatca tttcggtatt ataccgtagc tcctcatgat tgtgatgacc agattgtgaa 3240 gtgtatcaat tattccaaga ctctaagttc tggagatctt gatgctgtca gattaatttc 3300 tgacaattga gcgcaatgcg ctatttatta ttccaacaag aaggcgtctg agcgcatctt 3360 tctcagatct tgttgatgtt tccaataata tcaattgata ttattgatgc ctctaattta 3420 tagagatgc 3429 //