Dbfetch

Dbfetch

ID   DQ286871; SV 1; linear; genomic RNA; STD; VRL; 1050 BP.
XX
AC   DQ286871;
XX
DT   05-DEC-2005 (Rel. 86, Created)
DT   08-DEC-2005 (Rel. 86, Last updated, Version 4)
XX
DE   Turnip crinkle virus isolate RS2_2_2 coat protein (CP) gene, partial cds.
XX
KW   .
XX
OS   Turnip crinkle virus
OC   Viruses; Riboviria; Tombusviridae; Procedovirinae; Betacarmovirus.
XX
RN   [1]
RP   1-1050
RA   Li Y.H., Pallett D.W., Naylor M., Wang H.;
RT   "Low titer chronic infections maintain polymorphisms in the coat protein of
RT   Turnip crinkle virus";
RL   Unpublished.
XX
RN   [2]
RP   1-1050
RA   Li Y.H., Pallett D.W., Naylor M., Wang H.;
RT   ;
RL   Submitted (10-NOV-2005) to the INSDC.
RL   Plant Virology, NERC/Centre for Ecology and Hydrology (CEH), Mansfield
RL   Road, Oxford OX1 3SR, United Kingdom
XX
DR   MD5; 44d4879f61acba12727f61effa4f9772.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1050
FT                   /organism="Turnip crinkle virus"
FT                   /isolate="RS2_2_2"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom"
FT                   /db_xref="taxon:11988"
FT   gene            1..>1050
FT                   /gene="CP"
FT   CDS             1..>1050
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q2V857"
FT                   /db_xref="InterPro:IPR000937"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:Q2V857"
FT                   /protein_id="ABB89498.1"
FT                   /translation="MENDPRVRKFASEGAQWAIKWQKKGWSSLTSRQKQTARAAMGIKL
FT                   SPVAQPVQKVTRLSAPVALAYREVSTQPRVSTARDGITRSGSELITTLKKNTDTEPKYT
FT                   TAVLNPSEPGTFNQLIKEAAQYEKYRFTSLRFRYSPMSPSTTGGKVALAFDRDAAKPPP
FT                   NDLASLYNIEGCVSSVPWTGFILTVPTDSTDRFVADGISDPKLVDFGKLIMATYGQGAN
FT                   DAAQLGEVRVEYTVQLKNRTGSTSDAQIGDFAGVKDGPRLVSWSKTKGTAGWEHDCHFL
FT                   GTGNFSLTLFYEKAPVSGLENADASDFSVLGEAAAGSVQWAGVKVAERGQSVKMVTTEE
FT                   QPRGKWQALR"
XX
SQ   Sequence 1050 BP; 273 A; 291 C; 292 G; 194 T; 0 other;
     atggaaaatg atcctagagt ccgaaagttc gcatccgagg gcgcccaatg ggcgataaag        60
     tggcagaaga agggctggtc atccctaacc agcagacaga aacagaccgc ccgcgcagcg       120
     atggggatca agctctcccc tgtggcgcaa cctgtgcaga aagtgactcg actgagtgct       180
     ccggtggctc tcgcctaccg cgaggtttcc acccagcctc gggtttctac tgccagggac       240
     ggcataacca gaagcggttc tgaactgatc acaaccctga agaagaacac tgacactgaa       300
     cctaagtaca ccacagctgt gcttaaccca agcgaacccg gaacattcaa ccaactcatc       360
     aaggaggcgg cccagtatga aaaataccga ttcacgtcac tcagatttag gtactctccc       420
     atgagccctt caaccaccgg gggcaaggtg gctctggcat tcgaccgaga cgccgccaaa       480
     cctccgccca acgacctcgc ttccctctac aacatagagg gttgtgtatc tagcgtgccc       540
     tggacagggt ttattttgac cgtcccaaca gattctactg accgctttgt ggcggatggt       600
     atcagcgatc caaagcttgt cgatttcggc aaactcatca tggccaccta tggccaagga       660
     gccaatgatg ccgcccaact cggtgaagtg cgagtcgagt acaccgtgca gctcaagaac       720
     agaactggct caaccagcga cgcccagatt ggggacttcg cgggtgttaa ggacggaccc       780
     aggttggtct cgtggtccaa gaccaaggga acagctgggt gggagcacga ttgtcatttt       840
     ctcggaaccg gaaacttctc gttgacactg ttctacgaga aggcgcccgt ttcggggcta       900
     gaaaacgcag acgcctctga cttctcggtc ctgggagaag ccgcagcagg tagtgtccaa       960
     tgggctggag tgaaggtagc agaaagggga caaagcgtga aaatggtcac aactgaggag      1020
     cagccaaggg gaaaatggca agcactcagg                                       1050
//