ID DQ270032; SV 1; linear; genomic RNA; STD; VRL; 4647 BP. XX AC DQ270032; XX DT 01-NOV-2006 (Rel. 89, Created) DT 22-SEP-2009 (Rel. 102, Last updated, Version 2) XX DE Trichomonas vaginalis virus 1 isolate IH-2 capsid protein gene, complete DE cds; and dsRNA-dependent RNA polymerase gene, partial cds. XX KW . XX OS Trichomonas vaginalis virus 1 OC Viruses; Riboviria; Totiviridae; Trichomonasvirus. XX RN [1] RP 1-4647 RA Kim J.W., Chung P.R., Hwang M.K., Choi E.Y.; RT "Trichomonas vaginalis virus IH-2 isolated from Korea"; RL Unpublished. XX RN [2] RP 1-4647 RA Kim J.W., Chung P.R., Hwang M.K., Choi E.Y.; RT ; RL Submitted (28-OCT-2005) to the INSDC. RL Biochemistry, Inha University, 253 Younghyun-Dong, Nam-Ku, Incheon 402-751, RL Korea XX DR MD5; a67faf3537d39ab45373521aafc59df6. DR EuropePMC; PMC2526308; 17570970. DR EuropePMC; PMC3126235; 21345965. XX FH Key Location/Qualifiers FH FT source 1..4647 FT /organism="Trichomonas vaginalis virus 1" FT /isolate="IH-2" FT /mol_type="genomic RNA" FT /country="South Korea" FT /db_xref="taxon:674953" FT CDS 288..2324 FT /codon_start=1 FT /product="capsid protein" FT /note="P75" FT /db_xref="UniProtKB/TrEMBL:A0EQ15" FT /protein_id="ABC86750.1" FT /translation="MEASARGLSHDDNANKSQNVGPSTLPRSDKQGGEKHEISFNSFSN FT DFFFNFLRMSTNTHISDSPGVSFVGKDGTPYSSATIPSAVSRLTHNVVAAAAQLNITSD FT NVLEVDYGFGQDVSRSTGTITIPIFDGEKYKETARALAAIFSKKGSAVDVTSQTVQETL FT KNSDLTIATVAAGYYTALAARHELTKEVSLAQHTIPFVTALSDTFTAARGAQRSSHVIS FT SCLRCPASNNAQRDVAIGTNMWTNVFIESLSAQNMVVPNANDVSFFIPNKSLPPSWWCA FT IWLLNAFLHSFVAPTRFHIFITPGETYHLAPFTDADVYEAIPILLAMSKSSRPVPESVE FT SMLYAYGTQMIIQPHSLYTEGGLIRKMIFTVPHLPAHGYFVTNSEFSRYMNIAVPNDPR FT SAKDYIIGAGTGLLQIVLAYQAALSCAGPIALHWHGNDAISQGMDTIATTYLQGRYFTV FT PIAANVVNNVAQYTTLVRADPEYRHTLERILPRIFGPSIDTIYNFIESAISSSWTSIDA FT RKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVDYLLNGGDLR FT NCPVLRTLKAAEREGTITFMCKEKVGSLFAIDGTVRVFKRYETIDLAQLGWTSHGKVMK FT PYAFRAPIMQGMTICNTAYTSTDIDVVTTVFGPLRYHVGALFE" FT CDS <2308..4578 FT /codon_start=1 FT /product="dsRNA-dependent RNA polymerase" FT /note="P86" FT /db_xref="GOA:A0EQ16" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:A0EQ16" FT /protein_id="ABC86751.1" FT /translation="VPFLSKAVRCGPVVPSIKHHFNFKHVIDIKHGGNNYTFIPGYGWV FT LQDDYLLNAVKMTGEGDLPPDQLPYDDDLLLTYAKILLYDYITHFPKHRYKNPKILTPE FT TELQLFPLKTDSAARNKVNFYARSLWNETTTDKSAFKPGTYNDTVAGLLMWQQCALMWS FT LPHSVINKTISGVCDALTDRTSLALLKRISDWLKQLGLAFSPIHRLFIELPTLLGRGAI FT PGNAIKDIKHRFKFDPSITVDVPKDLLHSLIYRLLSRNLDISKKNSFEHHLEERLLWSK FT SGSHFYPDEMIDQLLPKQPTRKEFLDVVTADYIKQCAPRTYIRQSRKLEHGKERFIYNC FT DTISYVYFDFILKLFETGWQDREAILSPGDYTSERLHTRISSYKYKAMLDYTDFNSQHT FT IESMRLVFETMKELLPSETAFALDWCIASFDNMQTTDGKKWVATLPSGHRATTFINTVL FT NWCYTQMVGLEFDSFMCAGDDVILMSHAPISLAPILTSPFKFNPSKQSTGTRGEFLRKH FT YTNEGVFVYPTRAIASLVSGSWLSDSLRENTPILVPIQNGIDRLRSRAGLLGVPWISGL FT SELIEREAIPKDVGMALLNSHAAGPGLITRDYSSFTVTPNPPQVSSTLEYTATRYGLQD FT LCKHVPWNQLSTTECNRLGQQIKKMSHRHCSQAKITYHYTHEVFKPSGLPTVLSDASQP FT SLSMVWWQAMLKEAMQDNSTKKIDAHMFACNACTGCVSGDAFLRANPKLAGVLITSLIT FT SSS" XX SQ Sequence 4647 BP; 1337 A; 1190 C; 924 G; 1196 T; 0 other; actcaacatt gctactccgt atgacgaatc cacaacgcgg acacgtaaca agcgtagtgt 60 cctcgacgat tgccatcctc gtgtgaattc cgggctccgc ttgcactgat ggtacctctt 120 acgaaacttg gagagacttc ggcctcgaag agcggtaatg tatcctctgc gcctgggacc 180 taatggtgtt tttgctgtag gtaatttcag tggtaggaag attaggggtt aaacatcctg 240 gttcgctagg tttgtcctta actttactca gctgatgatg aatacccatg gaggcttctg 300 ctagggggtt atcacatgat gataatgcga ataaatcgca aaatgttgga ccttctactc 360 ttccgaggtc agataaacaa ggaggagaaa aacacgaaat ttcttttaat tctttttcta 420 atgatttctt ttttaatttt ttacgtatgt ctacgaacac tcacatctcc gacagtccag 480 gcgtttcatt tgttggaaaa gacggcaccc cctattcatc tgctacaatc ccttccgcag 540 tcagtcgtct cacacacaac gtagtagccg cggcagctca actgaacatc acatccgata 600 atgttttaga agtagattac ggctttggcc aagacgtttc aagatctaca ggaaccatca 660 caatccctat cttcgatggc gaaaagtaca aggaaacagc tcgcgcttta gcagcgatct 720 tcagcaagaa aggctcagca gttgatgtca cttcccagac agtccaagag acactcaaga 780 actcggacct cacaattgct actgtcgcag ccggatacta tacagcctta gccgctcgcc 840 acgaactcac aaaagaagta agccttgccc agcacacgat cccattcgta acagctttat 900 ccgacacctt taccgctgca cgaggtgcac aacgttcaag ccatgttatc tcttcctgct 960 tacgttgccc agcttccaat aacgcgcagc gcgatgtcgc aatcggcact aacatgtgga 1020 ccaacgtctt catcgaaagt ctctcagcac agaatatggt agttccaaat gccaatgatg 1080 tatcattctt catcccaaac aagagtcttc caccctcttg gtggtgcgct atttggctcc 1140 tcaatgcttt ccttcacagc ttcgtcgctc caactcgttt ccacatcttc atcacacctg 1200 gagaaacata tcaccttgct ccattcacgg atgccgacgt ttacgaagct atccctatct 1260 tgctcgcaat gtcaaagtcg tctcgccctg ttccagaaag tgttgaaagt atgctttacg 1320 cttacggcac ccagatgatc atccagccac attcactcta caccgaaggt ggattgatca 1380 gaaagatgat cttcaccgtc ccacatcttc cagcacacgg ttacttcgtt acgaattcag 1440 aattctcgag atacatgaac atcgctgttc caaacgatcc tcgttccgcc aaagattata 1500 ttataggtgc tggaacgggc ctcttacaga tcgtacttgc ctaccaggct gccctcagct 1560 gtgctggccc catcgctctt cattggcacg gaaatgatgc tatctcccaa ggcatggaca 1620 caattgcaac cacctatctt caaggaagat acttcacagt tccaatcgca gccaatgtag 1680 tcaacaacgt cgcccagtac actacactcg ttcgcgccga tcctgagtac agacacacac 1740 tcgaacgaat cttgccacgc atattcggcc catcgatcga cacaatctac aacttcatcg 1800 aatccgccat ttcgtcatcc tggacatcga tcgacgctcg caagcgcaat ggccgcgcca 1860 gaaagttcag aacagctttc atcaatcgct tccatgatcc agaattcgcc tacatgttcg 1920 gtatcactgg taatggtatc gagagaatgg aaggaaaagt tacttccaac atcgcgcaag 1980 aagtcgacta cctcttaaac ggaggtgacc ttcgcaactg cccagttctt cgtacgttaa 2040 aggcggcaga aagggaaggc acgattactt tcatgtgcaa ggagaaagtc ggctcactct 2100 tcgccatcga cggcacagtt cgcgtattca agagatacga aacgatcgac ctcgcccagc 2160 tcggttggac ctcacacggc aaagtcatga aaccatacgc cttccgggct ccgatcatgc 2220 aaggaatgac catctgcaac acggcttaca catccacaga catcgacgtc gtcacaacag 2280 tcttcggtcc cttacgttac cacgtaggtg ccctttttga gtaaggctgt acgttgtggc 2340 cctgtagtac catccatcaa acatcacttc aacttcaaac atgttataga tatcaagcac 2400 ggtggtaaca attacacatt catccccggc tacggatggg tattacagga tgattactta 2460 ttgaatgccg taaagatgac tggcgaaggc gatctacctc ccgaccagtt accttacgat 2520 gatgatcttt tacttacata cgcaaaaatt ttactttacg attacataac tcattttcct 2580 aaacacagat acaagaaccc aaagatacta actccagaaa cagaactaca gctcttccca 2640 cttaagacag actcagcagc tagaaataaa gtaaacttct acgctagatc actatggaac 2700 gaaacaacta cagataaaag tgctttcaaa ccaggaacat ataacgatac agttgcaggc 2760 ttattgatgt ggcaacaatg tgcactcatg tggtcactgc cccattcagt tatcaacaag 2820 acaattagcg gtgtttgtga tgcattaacc gataggactt cactcgcgct attgaaacga 2880 atttcagatt ggttgaaaca acttgggctg gccttttcac ctatccaccg cttattcatt 2940 gagcttccta cattgttagg acgcggtgcg attccaggca atgccataaa ggatataaaa 3000 catagattca aatttgatcc atcgataaca gttgatgttc caaaagattt attacatagt 3060 ttgatctaca gactcttgtc tcgaaatctt gatatttcta aaaagaacag cttcgagcac 3120 cacctagaag aaagattact ttggtcgaaa tcaggaagcc atttttatcc agatgaaatg 3180 atagatcaat tgcttcctaa gcagcctaca agaaaagaat tcctagatgt tgtaacagca 3240 gattacatta aacagtgtgc accccgaacc tatatcagac agtcacgcaa gctggagcac 3300 ggtaaggaac gtttcatcta caattgtgac acgatctcat atgtctattt tgattttatc 3360 ctgaagctct tcgagacagg atggcaagat agagaagcaa tattgtcacc aggcgactac 3420 accagtgaac gtctccatac cagaatctcc agttacaaat acaaagccat gttagattac 3480 accgatttca actctcaaca cacaatcgaa agcatgcgac tagtttttga gactatgaag 3540 gaactactcc cttctgaaac agctttcgcc ctcgactggt gtattgcctc attcgataat 3600 atgcagacaa cggatggcaa gaaatgggtg gccacccttc ccagcggaca tcgtgctaca 3660 acttttatca atacagtctt aaattggtgc tatacacaaa tggtcggtct tgaattcgac 3720 agtttcatgt gtgctggcga tgacgtcatc ttgatgtccc acgccccaat ttcgctagct 3780 ccaattctca catcaccttt caagtttaat cccagtaaac agagcacagg tacaagaggc 3840 gagttcttac gcaagcatta cactaacgaa ggtgtttttg tttatcctac acgagctatt 3900 gcaagtttgg tgagtggaag ctggttaagc gattcattaa gagagaacac tccaatattg 3960 gtcccaatac agaatggaat cgacagatta cgtagtagag caggtttact cggagtccct 4020 tggatttctg gcctctcaga actcattgag agagaggcta ttcctaagga cgtcggcatg 4080 gctttactaa attcacacgc agcaggacca ggtttaatca ctcgcgacta cagttctttc 4140 acagtcacac caaatccacc ccaagttagc agtacactcg aatacacagc aacccgctat 4200 ggtctccaag atttatgcaa acacgtacca tggaatcaac tctcaacgac agaatgtaac 4260 agattaggac aacaaattaa gaaaatgagt cacaggcatt gtagccaggc taagataact 4320 tatcactata ctcacgaggt cttcaaacct agtgggctcc ccacggtgtt atccgacgcc 4380 agccaaccat cgttgtcgat ggtgtggtgg caggcaatgc ttaaagaagc aatgcaggac 4440 aattctacga agaagataga tgctcatatg tttgcttgta acgcatgtac aggctgcgtc 4500 agcggcgatg cgtttttacg agcgaatcca aaactggctg gtgtcttgat cactagtctg 4560 atcacttctt catcataacg tacagctaga aagtctctat ggttgctcaa gacttataat 4620 gagccagatc ggcctcacta taccttc 4647 //