ID DQ256125; SV 1; linear; genomic RNA; STD; VRL; 4823 BP. XX AC DQ256125; XX DT 15-AUG-2006 (Rel. 88, Created) DT 15-AUG-2006 (Rel. 88, Last updated, Version 1) XX DE Capsicum chlorosis virus segment M, complete sequence. XX KW . XX OS Capsicum chlorosis virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; Orthotospovirus; OC Capsicum chlorosis orthotospovirus. XX RN [1] RP 1-4823 RX DOI; 10.1007/s00705-006-0749-4. RX PUBMED; 16601925. RA Knierim D., Blawid R., Maiss E.; RT "The complete nucleotide sequence of a capsicum chlorosis virus isolate RT from Lycopersicum esculentum in Thailand"; RL Arch. Virol. 151(9):1761-1782(2006). XX RN [2] RP 1-4823 RA Knierim D., Blawid R., Maiss E.; RT ; RL Submitted (21-OCT-2005) to the INSDC. RL University Hannover, Plant Pathology and Plant Diseases, Herrenhaeuser Str. RL 2, Hannover 30419, Germany XX DR MD5; dda185a7368af8e21eee240f4adbf179. DR EuropePMC; PMC3371012; 22715400. XX FH Key Location/Qualifiers FH FT source 1..4823 FT /organism="Capsicum chlorosis virus" FT /segment="M" FT /host="Lycopersicum escultentum cv. King Kong 2" FT /lab_host="Nicotiana benthamiana" FT /isolate="AIT" FT /mol_type="genomic RNA" FT /country="Thailand" FT /note="serogroup: IV; acronym: CaCV" FT /db_xref="taxon:163325" FT gene 57..983 FT /gene="NSm" FT CDS 57..983 FT /codon_start=1 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:Q0P0H0" FT /protein_id="ABB83820.1" FT /translation="MSRISNVLESFRPSNSSKKELVPAVKMENNRGLLARNVSQKDIDS FT ALLNKAKTINGKQYVSGGDSSVLGTYSNEMVVEATSDDILSRLVVEQSTHLSNWKNDSL FT VGNGNDKVSFTINIMPTWNSGRRFMHISRLIVWVVPTIPDSKNSVKATLIDQNKMTKAD FT KIVISRQASLKDPMCFIFHLNWSFPKERNTPKYCMQLNLTSDEKYAKGVSFASVMYSWV FT KNFCDTPIASESNTCDVVPINRAKVIQSAALIEACKLMIPKGTGGKQISNQIKSLQKVA FT EKLALEAEDEGESIDVDIEIDNLLEIS" FT misc_feature 984..1410 FT /note="intergenic spacer" FT CDS complement(1411..4776) FT /codon_start=1 FT /product="glycoprotein precursor G1/G2" FT /db_xref="GOA:Q0P0G9" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:Q0P0G9" FT /protein_id="ABB83821.1" FT /translation="MKKYYLLVYCLGLLSLFLVSEVYLLNQVDTSIQLKKMQDRYKVDD FT PEDLIDKEEPVITEAPETKGKKLSRILRNDESATDQPSLSLNCDSFEKKYCIIKGVSDF FT NAHYQIDSGKEIISCISSSSNIFEICQYDKEFKKIKFKNFPVVPVLKLENKKVLEIGTK FT FFFVDKSNNPINIDPKVNLKSPTVARLSVRLSGDCKISQVSMASPYQIKLRSEENIGIL FT IKNIKSSKLENIKSIIGDSTINFKPEELDGNHFLLCGDKSSLIAKVDIPVRNCVSKYSN FT EPKKIFFCTNFSYFKWVFVFLMIAFPISWLIWKTKNALSLWYDILGILTYPILWIINWL FT WPYFPLKCRICGCFSFLTHSCTDKCVCNQNEASKDHAEECYLNIKDKVEWHKLTLIQQF FT QFIINTKLSTNFLVFVTKMILASILISYIPSSIASKQQNLCVEKCYYNLNLDSLTTDKF FT GMSDNGYETCQCSIGNVITETVYRSGVPMSRATSLNDCVIGSDMCMTSSNQAQNLFACR FT NGCNSLASIKTIPDVKFNKLYRGQSFKGNLTSLKIANRLREGYMDSSTESIILEEESAR FT EYRFYKSLKVDDVPPENLMPRQSLVFSTEVDGKYRYLIEMDIKSNTGSIYLLNDDATHS FT PMEFMVYVKSVGVEYDVRYKYSTAKVDTTVADYLVTCTGACTDCIKQKPKVGMLDFCVT FT LTSWWGCEELGCLAINEGGICGHCTNIYDLSSLVNIYQVIESHVTAEICVKSLDGYSCK FT KHSDRSPIQTDYYQLDMSVDLHNDYMSTDKLFAVDKQQKILTGNIADLGDFAGSSFGHP FT QITADGIPLSVPTTLSPKDFTWSCSAVGEKKVNIRQCGLYTYSNIYSLSTSKDATQIDE FT NNNKLYMGKDFLVGKLKMVIDMPKEMFKKIPTKPIISEAKMICSGCSQCAAGIDCNITY FT TSDTTFSSRLMMDTCSFKSDQLGTFLGPNRKSIKAYCSEEIADKSLKLIPEDQDELTVD FT IPVDEFIHIDQDTIIHFDDKSAHDENIHHSDTSISSFWDWVKAPFNWVASFFGNFFDLV FT RIILVIAAACIGIYILNSIFRLSKTYYVDKRRQKLEDAIESMESSVLLTNYKSVDQARK FT RKSPPKDYDFSLEI" XX SQ Sequence 4823 BP; 1564 A; 856 C; 813 G; 1590 T; 0 other; agagcaatcg gtgcgccaat tattagataa aatcattaaa atatcatcaa gaaataatgt 60 ctcgcatttc taacgtgttg gaatctttcc gtccttcaaa cagctcaaaa aaagagctag 120 tccctgcagt gaaaatggag aacaatagag gtcttctggc taggaatgtt tctcagaaag 180 acattgacag tgctttactg aacaaagcca aaacaataaa tggtaaacag tatgtttctg 240 gaggagactc cagtgtgttg ggcacatatt ctaatgaaat ggttgtggag gctacttcag 300 atgacatttt atcgaggctt gttgttgaac agagcactca tctgagcaac tggaagaatg 360 attctcttgt cggtaatggg aatgacaaag tcagcttcac tataaatata atgccaacct 420 ggaatagtgg gcggaggttt atgcatatat cccggcttat agtctgggtt gtcccaacca 480 tcccagattc taagaacagt gttaaagcca ctttaattga tcagaacaag atgaccaaag 540 ctgacaaaat agttataagt aggcaagctt ctctgaaaga ccctatgtgc ttcatttttc 600 atttaaattg gtcgtttcct aaggagagga acactcctaa gtactgcatg caactcaatt 660 taacaagtga tgagaaatat gccaagggag ttagctttgc atcagtgatg tactcatggg 720 taaaaaactt ttgtgacact cctattgcct ctgaaagcaa cacatgtgat gttgttccaa 780 taaacagagc taaagtgatt caatctgctg ctttgattga agcatgcaaa ttaatgatac 840 caaaagggac tggaggtaaa cagatctcta atcaaatcaa gagcctgcaa aaagttgcag 900 aaaagctagc attggaagcc gaagatgaag gagagagcat tgacgtggat atagaaatag 960 ataatctcct tgagatttct taataactac cagcaacatg tgtgtttaag taaattgaat 1020 ttaagtagta atattatcta tttatatttt atataattaa atcacataga ataagtcaat 1080 acagttaaag taaatgttta tttgtataat ttatgttcat tatgttatgt agatatttat 1140 gtgtgtagct ttaagctaaa acaaaagagt aaaacagcaa aacaaacaaa aaaagtaaaa 1200 ataacaaaac aaacaaaaat gaaacaaaac agacactata tttataaata aataaggctt 1260 aggccaggtg ttggcttttc agcctttttt tggatttaaa tcattttact attttttatt 1320 catttattta cttcatttat aactttctta ttatatatac taaatactta atgggacaat 1380 ctgaagagct aaaatctact taaatgactt ttaaatttct agagaaaagt cataatcttt 1440 tggaggagat tttctcttcc tagcctgatc aactgattta taattagtta gaagaacact 1500 tgattccatg gattctatag catcttctag cttttgtctt cttttatcaa cataatatgt 1560 ctttgataac ctgaatatac tgttcaagat gtatatgcca atgcatgcag ctgctataac 1620 taagattatc ctaaccaagt caaagaagtt accgaagaaa gaggcaaccc aattgaaagg 1680 tgctttcacc caatcccaaa aactggatat agaggtgtct gaatgatgta tgttctcatc 1740 atgtgcactt ttatcatcaa agtgtatgat cgtgtcttga tcaatatgga taaattcatc 1800 aacaggaatg tctactgtca gctcatcttg atcttcaggg attagcttca aagatttgtc 1860 tgcaatctct tcggagcaat aagcttttat agattttcta ttgggaccta aaaatgttcc 1920 cagttggtca gacttaaaag aacaagtatc catcataagc cttgatgaga aagttgtatc 1980 agaagtataa gttatattgc aatcaatccc tgcagcacac tgagaacacc cagagcatat 2040 cattttagcc tccgagataa taggttttgt agggattttt ttgaacattt ccttaggcat 2100 gtctataacc attttaagtt tacctaccag gaaatccttt cccatatata atttgttgtt 2160 gttttcatct atttgagtag catcttttga tgtagataaa ctatagatat tactatatgt 2220 atacaatcca cattgtctga tgttaacctt cttttctcct acagcactgc aactccaagt 2280 gaagtctttt ggtgataaag ttgtaggaac agataatggt attccatccg ccgtaatttg 2340 gggatgtcca aatgatgatc ctgcaaaatc tcctagatca gctatattcc cagtaagaat 2400 tttctgctgc ttatctactg caaacaattt gtctgtgctc atgtaatcgt tgtgcaaatc 2460 aactgacatg tcaagctggt aataatcagt ttgaatagga gatctatcag aatgtttttt 2520 acaagagtat ccatctaatg atttaacaca tatttctgca gtgacatgac tttcaataac 2580 ctgatatatg ttgaccaagc ttgatagatc ataaatattg gtgcaatgcc cgcaaattcc 2640 tccttcattt attgctaaac agccaagctc ttcacaaccc caccaagaag tcagtgtaac 2700 acaaaaatct aacattccta ccttaggttt ttgtttaatg caatcagtgc aggcacctgt 2760 gcatgttacc agataatctg ctacagttgt atctactttt gctgtagaat acttgtatct 2820 tacatcatac tctacaccta cactctttac ataaaccata aactccatgg gagagtgagt 2880 agcatcatca ttaagcaaat atatagagcc agtgtttgac ttaatatcca tttctataag 2940 atatctgtat tttccatcaa cctctgtaga gaatactaaa gactgtctag gcatgagatt 3000 ctcaggaggg acatcgtcca cttttaaact cttataaaat ctatattctc tagcagattc 3060 ttcttccaaa attatagatt cagtggaact gtccatgtac ccttctctca acctatttgc 3120 tatctttaaa ctggttagat tacctttgaa agattgtcct ctgtacaact tattaaattt 3180 aacgtctggt attgttttta tagatgcaag agaattacaa ccattcctgc atgcaaacaa 3240 attttgagcc tggttgctgc tagtcatgca catatctgaa ccaatcacac agtcattaag 3300 agacgtagcc ctggacatcg ggactccaga tctgtatact gtctctgtta taacattccc 3360 tatagaacat tgacatgttt catacccatt atctgacatt ccaaacttat cagttgtcaa 3420 agaatctaga tttaaattgt agtaacattt ttctacacat aaattctgtt gtttagatgc 3480 tatacttgat ggtatataag agataaggat tgatgccaat atcatttttg tcacaaatac 3540 cagaaaattg gtgctcagct ttgtatttat tataaattga aattgttgga ttaaagttaa 3600 tttatgccat tcaactttgt cttttatatt aagatagcac tcttcagcat ggtctttaga 3660 tgcctcattt tggttgcaaa cacacttgtc tgtacaagag tgggtcaaaa acgagaaaca 3720 accacaaatt ctacacttca aggggaaata tggccacaac cagttaataa tccataaaat 3780 agggtatgtt aaaatgccaa ggatatcata ccagagactt aatgcatttt tagtcttcca 3840 gatgagccat gatataggaa atgcgatcat gagaaacaca aaaacccatt tgaaataaga 3900 aaaatttgtg cagaaaaaga ttttcttagg ctcgtttgag tactttgaaa cgcaattacg 3960 taccggtatg tctactttag caatcaagct ggatttgtca ccacaaagca aaaaatggtt 4020 accatctaat tcttcaggct taaaatttat tgtggaatcg ccaatgatag attttatgtt 4080 ttcgagcttc gagcttttta tattttttat taaaatccca atgttttcct cagatctcag 4140 tttaatctgg taaggagatg ccatcgatac ttgactaatt ttacagtcac ctgataacct 4200 aacagaaagt cttgcaacag ttggggattt taaatttact tttggatcaa tattgatcgg 4260 gttatttgat ttgtcaacaa aaaagaattt tgtgccaatt tcaaggacct ttttattctc 4320 caatttcagt acagggacca ctgggaaatt tttgaacttg atctttttga actctttatc 4380 atattgacag atctcaaata tgttcgaaga gctgcttatg cacgaaatta tttctttacc 4440 actatcaatc tggtaatgag cattgaaatc actcacacct ttaatgatac aatatttttt 4500 ctcaaagcta tcacaattta aactcaatga tggttgatct gttgcacttt catcgttccg 4560 taaaattctg gacagtttct tacctttggt ttcaggtgcc tcagttatca caggctcttc 4620 tttatcaata aggtcttcag gatcatctac tttgtatctg tcttgcattt ttttcaattg 4680 gatgctagta tccacttgat tcaagaggta gacttcagac acgaggaaga gcgaaagtaa 4740 gcctaggcag tagacaagta gatagtattt cttcatcttt atgaggtaat tcaagagtat 4800 ttaattgttg cactgattgc tct 4823 //