ID DQ256124; SV 1; linear; genomic RNA; STD; VRL; 8912 BP. XX AC DQ256124; XX DT 15-AUG-2006 (Rel. 88, Created) DT 15-AUG-2006 (Rel. 88, Last updated, Version 1) XX DE Capsicum chlorosis virus segment L, complete sequence. XX KW . XX OS Capsicum chlorosis virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; Orthotospovirus; OC Capsicum chlorosis orthotospovirus. XX RN [1] RP 1-8912 RX DOI; 10.1007/s00705-006-0749-4. RX PUBMED; 16601925. RA Knierim D., Blawid R., Maiss E.; RT "The complete nucleotide sequence of a capsicum chlorosis virus isolate RT from Lycopersicum esculentum in Thailand"; RL Arch. Virol. 151(9):1761-1782(2006). XX RN [2] RP 1-8912 RA Knierim D., Blawid R., Maiss E.; RT ; RL Submitted (21-OCT-2005) to the INSDC. RL University Hannover, Plant Pathology and Plant Diseases, Herrenhaeuser Str. RL 2, Hannover 30419, Germany XX DR MD5; cbe4863f3ad398dc76809dc783e7c494. XX FH Key Location/Qualifiers FH FT source 1..8912 FT /organism="Capsicum chlorosis virus" FT /segment="L" FT /host="Lycopersicum escultentum cv. King Kong 2" FT /lab_host="Nicotiana benthamiana" FT /isolate="AIT" FT /mol_type="genomic RNA" FT /country="Thailand" FT /note="serogroup: IV; acronym: CaCV" FT /db_xref="taxon:163325" FT gene complement(248..8881) FT /gene="L" FT CDS complement(248..8881) FT /codon_start=1 FT /gene="L" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q0P0H1" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR015841" FT /db_xref="UniProtKB/TrEMBL:Q0P0H1" FT /protein_id="ABB83819.1" FT /translation="MNIQTINSFLDTSGEITVYLQRIKDEIMSMSNIVERSYPEGKGVI FT DSGLNSIMSMNYILDKIEDMKSRYHQSSSSIDQKEMETEIFLFLDKYKELELMRHDLFG FT VLAGRKLHFAPKHRSDVFLKDCLMSYIEFCNTSTSIMNKIPNIDDLKEKLVFQHLTPDN FT YTIYKETSGERACLMIYDWKVSVDTMSETKTSENYYTSVWKTFKDITVDGQPFLERHPI FT FVTIVILNPSGNMSITATTSRVIQELRNSPYRTFNDRRKAALAAKLISVNSIGQLIGLG FT TDCFRRFYAETQAFKNSLLSKVGEYMNRSSEVFFSHWSYEYRKTNLTNNQTSQDIIDLI FT DAMPNEKIKKDMIVHFLFGSYLYFKDTMSDLHLKDRFEGYKAHCEMMKVDPIETEEELK FT RYLDKNEDTFEELYESHFNKIKSDVLSKKAKETEIDSIETAFNINAGEYQKEYPGCFTN FT DLQETKTNFSICWSPMTEELKMNDLNYNNAIIQSFRTSFIEQPKLIHHKSYGGSKVDLH FT FSMTLFNLVKTCLMDLSIDTTGHSKAALEDVVDVKDGSIQVKRTDTSQTWREIGSVKTR FT NGNEFTLSPLTSSDARKHFFKGLSLMYIDMGKKKKIDIKNELKSKIQEAKSKKDNDEPE FT TPSGEYDISKADIPYQMSLKSITHNKKLIRHDNPDVKYFCESMIEAMYVLYGMDERKNK FT KSKINSVYDEYCSNPASLFTKGNLIESEMTIAKNIHEVSKELSIYTYSEDMMQLAKGLM FT VADRFMKKTDFKILTCANTSMICLAFKGDGINTGKSGVPYITLHRVEKDIQPYFVSLYT FT KELVVSFRSGNYFVNIMKPQRLNQVRLLSLFKAPSKVPILFSQYSLLSTEIKKWLNQPS FT IDVFTCPENKIQYLQKILFSSVVIGTVTKLSRMGIFDFMRYAGFLPLSDYSNIKEYIAE FT KFDPDITNVIDCFFVSGIKTLLLKMEGINLSNNIKPLTIDQENDMSGGISDLDIVCPIT FT GSTLKTIECLYNNVYLAIYMMPKSLHTHVHNLTTLLSVPAEWEVKFREKMGFKLDEEIK FT PKKEMFNDSGPFSIDGVLNIKTLFDYYRKNISNVGACRSNIEDKEDFLSAPYKIKTLTS FT SKKCSKADIIKNTEIVAALKSVFGKHPDDIKGPNLYILKGVLKCFEEDRESLINFMEIE FT GLDESKYIHFFSNMMSGSNKVLMKTNQDKFYYKSHPLTVETFMKVRYGYFKTTTVLKSK FT KVSEELYDLIKEFNKITEIDLEALEKLGRGLKGNRVTFIQLLEFILMKSRTNAGNTDFL FT VSVFEKMQRTKMDREIYLMSMKTKMMLYFIEHTYKHVAQADPSEAISISGDYKIKNLAS FT LSYDTITNYNTALQKNLECKMAFLSADQSKWSASDLTYKYILAVIMNPILTTGEINLMC FT ECIMMYVKLKRVCIPTDIFLNLKRGQTEYGSYGTALSVLTDNLETNTFPVSMNWLQGNL FT NYLSSVYHSCAMMGYEKSMKRMKDYDFTIRWMVHSDDNATSMVVRGNIKELLLNFNCSS FT LSELLFRSIQSHFKSYCITLNPKKSYASESEVEFISERIINGAVIPLYCRHLANCSTES FT SHNSYFDDLMSLSIHITMLLRKGCPNELIPFSYAAIQVQSLSIYSMLPGEENDITTIVK FT EIDFPLAKREIPICAGGWMYAPVELLSILGPSSNDQLIYYKIILDFFNIKDFSSLKKNV FT NSLGYIDLRINELFKRLISKRTTIADKKMICMVNLFKTSLMSEDCDSLSVGMKFQSMIT FT QIIKLPSFVSESSLLKNSSFVDFCKLFPNLKKNTDILNALKPNNLDERDLGEINESKFL FT SQIQLEELSRHMSSHPESFLIAPMNDKDYILTNIYTYSSVSKRNQMSNQSTEKLALDRI FT LRSKAKTFLDPNSKEMVSYKDNMSLKMKEIMNSSGNDFKIINTISELMVRDMNFEMVIS FT LMENTVANASIPKANYNFRWFITEKVPSVIEGSPGLIVMSAVYGMDYLIDLGLKKLPLT FT ETSISILHDIFGNRKTFDDVKECIQNGGKQYKTEEFQCADVLKRYVLSINYMIQSQNKL FT LSINTCFSRKNFPFYSKYNLGKTFITNTLAIWSTIYSRLTNINFYTNLNFVIDRSSRLI FT ISLQRDMNLEKLIDCCAYVSDRLQSLFPDMTIESIRQILCRLNFNGVDLMKKMKSEISE FT VKRAINNIKTSTHVTLSFRPQMIAMSKHAAWLYNFGYINEKEFKFVIDQIRQSEVHYIK FT TDEQDVRGYYVSGHTYKIGIKTQYNYGQLAMTNQDVSIHLHSPYEYQREDDGKIWEVHV FT KSAYKLLQKLLIDKQSAIRTFLNMRSDLMPNQFCIHESSNKTLLILINDTTKPITLERI FT KFKGSIKYIPSSDFAWNMMSNQSKYKLRTAETGECYTELYKSIESDSLIDTILANLKKS FT LEYGNEMENLIEQSILGIDDGETIDYIKDSVDQIHKLAIEGLETCTTSEEFEDYLTQVE FT FQTTVDFHKDLLDQIVESKYRATDRINSAVEKLTQWTNSLSTFKDVCIMLKFAMINDSK FT GIKTYKANGSDFHSLSASEVMTSQGFDLFEILKLIKACEACHTSNSVLNLIAFKNIKNK FT TYIPGFKKTKSDTVHFDYEMKLNNEVMNKFYEYKTISLQDIKISDRVKMVLENHGFSVT FT GQNLKLAEMNLELNPVEIIDDSSTYDQIARQMRLTKKKSSYLIPANTLLLGELMKFLML FT CIKGEEHDIMKLLRSHFAMKPVRENRLLSVQDAVMTCRISGFIQRHFLNDKKEIILLGV FT SDSLENFISLATPNYTVQEPFKAEALIKKALLEVYDSGKYKILKKIRNYIVADVEFLTE FT KCLYSNITNEEISSMIFNAVSKIDLEISNLKPKKRNKRLELHEVFNKFLGSDSTSLGQE FT " XX SQ Sequence 8912 BP; 2596 A; 1603 C; 1379 G; 3334 T; 0 other; agagcaatcg agcaacaaat taaagtattc taaactcagt ttcaatatta ataagaaata 60 ctatttctga cactaatgtc tggtttagaa cttgcaacta gactgcatcc tattatgatg 120 caatctgttt ttaaaccttt tccaagaatt atacaattgg cagctttgcg ctcttttctt 180 gttttagaat ctgtactaaa tattctatta tcggttatta tactattgcc cataaattat 240 ttacatttta ttcttgacct agagaagtag agtctgatcc taaaaactta ttgaaaacct 300 catgcagttc taatctttta tttcgctttt taggtttcag gttagatatt tctaagtcaa 360 ttttgcttac agcattgaat atcatgctgc taatttcttc gttggttata tttgaataca 420 aacatttttc agtaagaaat tctacatcag caactatgta attccttatc ttctttaata 480 tcttatattt tccagaatca tatacctcta gcagagcttt ttttattaaa gcctctgctt 540 taaatggttc ttgtacagtg taattcggag ttgccagaga tataaagttt tccaaactgt 600 cagatacacc taacaagatt atctcttttt tatcattaag aaaatgcctt tgtataaatc 660 cacttattcg gcatgtcatc acggcatctt gaacacttag taatctattt tctcttactg 720 gcttcattgc aaagtggctt ctcaataatt tcattatatc atgctcttct cctttgatgc 780 acaacattaa gaacttcatt aattctccta atagcaatgt attggcagga atgagatagg 840 agcttttttt ctttgtcagt ctcatctgtc tcgcgatttg atcataagtg gaagaatcat 900 cgatgatctc cactgggttc agttctaaat tcatttcagc tagttttagg ttttgaccgg 960 tcacactgaa tccatggttt tctaaaacca ttttgactct gtctgaaatt tttatgtctt 1020 gcaaagagat tgtcttgtac tcataaaact tgttcatcac ctcattattt aatttcattt 1080 cataatcaaa atgaacagtg tcagatttag tctttttaaa cccgggaata tatgttttgt 1140 tttttatatt cttaaaagca atcaaattta gcacagaatt actagtgtgg caggcttcac 1200 atgcctttat aagtttaaga atttcaaata aatcaaatcc ttgtgatgtc atcacttcac 1260 ttgctgaaag agaatggaaa tcagatccat tcgccttgta tgttttaatt cctttagaat 1320 cattgatcat tgcaaatttt agcatgatac aaacatcttt gaatgttgat aagctatttg 1380 tccactgtgt taacttttct acagcactat ttattctatc agttgctctg tacttacttt 1440 ccacgatctg atctaacaga tctttgtgga aatcaacagt tgtttgaaac tcaacttgtg 1500 taagataatc ttcaaactcc tctgaagttg tacatgtttc taaaccttct atggctaatt 1560 tgtggatttg atcgacagaa tctttaatat aatctattgt ttccccatca tcaattccca 1620 agattgattg ctctattaga ttttccatct cgttaccata ctctagactt ttctttaaat 1680 tagctagtat agtgtctatt aagctgtcac tttctatcga tttgtacaat tcagtgtaac 1740 attcccccgt ttcagctgtt cttaatttgt attttgattg attgctcatc atgttccacg 1800 caaaatctga agatggtatg tactttatgc tgcctttaaa ttttatcctc tctaaagtta 1860 taggttttgt tgtatcatta atcaatatca acaatgtttt gttcgagctc tcatggatgc 1920 agaactgatt gggcattaaa tcagacctca tgttgaggaa agttctaatt gcactctgct 1980 tatctatcag caacttctgc aacaacttgt atgctgattt aacatgaact tcccagatct 2040 ttccatcatc ttctctttgg tattcataag gcgaatgtaa atgaattgaa acatcttgat 2100 ttgtcatagc taactgtcca tagttatact gagtctttat tcctattttg taagtatgtc 2160 ccgaaacata atatcctctg acatcttgct catctgtctt tatataatgg acttcactct 2220 gccttatttg gtcaataaca aatttgaatt ctttctcatt tatgtaccca aaattatata 2280 accatgccgc atgtttgctc atagcaatca tttgtggtct gaatgataag gttacgtggg 2340 ttgatgtttt tatattattt atagccctct taacttcaga aatctctgat ttcatcttct 2400 tcattaaatc taccccatta aagttcaatc tacacaatat ttgcctaata gattctatgg 2460 tcatgtctgg gaatagactt tgtaatctat cagaaacata agcacaacaa tcaatcagct 2520 tttctaaatt catgtctctc tgtagcgata tgataagtct tgagcttcta tcgataacga 2580 aattcaagtt agtgtaaaaa tttatattag ttaatctact atatatagtg ctccagatag 2640 ccaatgtatt ggtgatgaat gttttgccta gattgtattt tgagtaaaaa gggaaattct 2700 ttctagaaaa acaggtgtta atagaaagaa gtttgttctg agactgaatc atatagttga 2760 tgctcaaaac atatcttttc agcacatcag cacattggaa ttcttctgtc ttgtattgct 2820 taccaccgtt ttgaatacat tccttgacat catcaaatgt tttcctattt ccaaaaatgt 2880 catgcagtat agagatagat gtttctgtca aagggagctt ttttaaacct agatcaatca 2940 ggtaatccat accataaaca gctgacatca cgatcaatcc tggtgagcct tcaattacac 3000 taggaacttt ttctgttata aaccacctga agttgtagtt ggcttttgga attgaagcat 3060 tagcaacagt gttttccatt aaggaaataa ccatctcaaa gttcatatcc ctgaccatga 3120 gctctgaaat tgtatttata atcttaaagt cattgcctga tgagttcatt atctctttca 3180 tcttcaaaga catgttatct ttgtatgaaa ccatttcttt ggagttagga tcaagaaatg 3240 ttttagcttt agatcttaat attctgtcca gagccagttt ttctgttgat tgattcgaca 3300 tctgattcct tttacttaca ctgctatatg tgtaaatgtt tgttaaaatg tagtccttat 3360 cattcatagg agcaattaaa aaagattcag gatgggaaga catatgtctg cttaattctt 3420 ctaactggat ctgggacaag aattttgatt cattaatttc tccaagatct ctttcatcta 3480 gattattagg tttcaatgca tttagtatgt cagtgttttt cttcaaattg ggaaataatt 3540 tgcagaaatc tacaaagcta gagtttttta acaaagaact ctcactaaca aaactaggca 3600 actttataat ctgcgttatc atggattgaa atttcattcc cacacttaaa ctatcacaat 3660 cttctgacat taaacttgtt ttgaacaaat ttaccatgca tatcattttc ttatctgcaa 3720 tagttgttct tttggaaatc aatcttttga ataattcatt tattctcaaa tctatatagc 3780 ccagagagtt aacattcttc ttgagactac tgaaatcttt tatattgaag aagtctaata 3840 ttatcttgta atatatcaac tgatcatttg aagaaggtcc aaggatggat agcaactcta 3900 caggagcata catccaacca ccagcacaga taggaatttc tctctttgcc aaagggaaat 3960 caatctcttt gacaatagta gttatgtcgt tctcctcacc aggtaacatt gagtatatgc 4020 ttaatgactg gacctgtatt gctgcataag aaaaaggtat taattcgttt ggacaacctt 4080 ttcttaaaag catggtaata tggatagaga gagacattaa gtcatcaaaa tagctattat 4140 gggagctttc agtactgcaa ttggccaaat gcctgcaata taaaggaatg acagcaccat 4200 ttattattct ttctgatata aattcaactt ctgattctga agcatagctt tttttgggat 4260 tgagcgttat gcaatagctc ttgaaatgtg attgtatgct tctgaaaagc aattctgaca 4320 aactagaaca attgaagttc aataacaatt ccttaatgtt ccctctgacc accattgatg 4380 ttgcattgtc atcagaatga accatccacc ttatggtgaa gtcatagtct ttcattcttt 4440 tcatagactt ttcatagccc atcatggcac aagagtgata tacagatgat aagtaattca 4500 agttcccttg aagccaattc attgacacag ggaatgtgtt tgtttccaaa ttgtctgtta 4560 agacagataa agcagttccg tatgagccat attctgtttg acctcttttt agattgagga 4620 agatgtcggt tggaatgcaa actcttttaa gcttgacata catcattata cactcacaca 4680 tcaggtttat ttctccggtt gttaagatag ggttcattat aacagctaat atgtacttgt 4740 atgtcaaatc tgatgccgac cattttgatt gatctgctga taagaatgcc attttgcatt 4800 caaggttttt ttggagtgcc gtgttataat ttgttatagt atcatatgat agcgatgcaa 4860 ggtttttaat cttataatct ccagatattg atattgcctc agaaggatct gcttgggcta 4920 catgtttgta tgtgtgctca ataaaataca gcatcatctt tgtcttcatg ctcatgagat 4980 aaatctctct atccatcttt gtcctctgca tcttttcaaa cactgaaaca aggaaatctg 5040 tatttcctgc attggtccta gacttcatca aaatgaattc aagtagttgt ataaatgtta 5100 ctctattacc tttcaatcct cgacccagct tttctaaagc ttccagatca atctctgtaa 5160 tcttgttgaa ttctttgatc aaatcatata gctcctcact aacctttttt gatttcagaa 5220 cagtagttgt cttgaagtag ccatatctta ctttcataaa tgtctccact gtcaatggat 5280 gactcttgta gtagaatttg tcctgatttg ttttcatcaa gactttgttg ctgcctgaca 5340 tcatattaga gaaaaaatga atatattttg attcatccaa accttcaatc tccataaaat 5400 taatcaaaga ttctctgtct tcttcaaaac attttaaaac ccctttaagt atgtataagt 5460 ttggtccttt tatatcatca ggatgtttcc caaatactga ttttagagct gctactattt 5520 ctgtattctt tataatgtcg gcttttgagc acttttttga agatgtcaat gtttttattt 5580 tgtatggtgc tgataagaaa tcttctttat cttctatatt tgatctgcag gcaccaacat 5640 tgcttatgtt cttcctataa tagtcgaaca gagtttttat gttgagaaca ccatctatag 5700 aaaatggacc tgaatcattg aacatctctt tcttgggctt aatttcttca tctaacttga 5760 aacccatctt ttctctaaac ttaacttccc attcagcagg tacacttaag agggttgtaa 5820 ggttatgcac atgggtatgg agtgatttag gcatcatata gattgctaga taaacattat 5880 tgtaaagaca ttctatagtc ttcaatgttg atcctgttat tgggcagacg atgtctaagt 5940 ctgatatccc acctgacatg tcattttctt ggtctatagt caaaggtttt atgttgttgc 6000 tcaggttgat tccctccatt ttcagtagaa gagtttttat gcctgataca aaaaagcagt 6060 ctataacatt tgttatgtct ggatcaaatt tctctgctat atattctttg atatttgaat 6120 agtcagaaag tggtaagaac cctgcatatc tcatgaaatc aaatattccc attctactga 6180 gtttagtgac agtgcctatg accacagaag aaaacaagat tttctgaaga tactgaatct 6240 tattttcagg gcaggtgaaa acatctatag aaggctggtt caaccacttt tttatttctg 6300 tacttaataa tgaatattgt gagaataaaa taggaacttt gctgggtgct ttaaacaagc 6360 taagaagcct cacttgattt agtctttgtg gtttcattat attgacaaaa taattccctg 6420 atctaaaaga tacaaccaat tcttttgtgt agagagaaac aaagtatggt tgtatatctt 6480 tttctactct gtgcagagtt atatatggga ctcctgactt acctgtgtta ataccatctc 6540 ctttgaatgc gaggcatatc atacttgtgt tagcacatgt caaaatcttg aagtcagttt 6600 tcttcataaa tcgatctgct accattaaac ctttagccag ctgcatcata tcttcactat 6660 aggtatatat agacaactct ttagatacct catggatatt tttagcaatt gtcatttcag 6720 attctattaa attaccttta gtgaataatg acgcagggtt agagcagtac tcatcataaa 6780 ctgagtttat tttactcttt ttatttttcc tttcatccat accataaagt acatacatag 6840 cttctatcat agactcgcaa aaatacttga cgtcagggtt gtcatgtcta ataagctttt 6900 tgttgtgggt aatgcttttc aaactcattt gataaggtat gtcagctttt gatatatcat 6960 actccccact aggagtttca ggttcatcat tatccttttt agattttgcc tcttgaattt 7020 tgcttttaag ctcatttttt atgtctattt tctttttctt tcccatatct atatacatca 7080 gactcaggcc tttaaagaag tgttttctag cgtcactaga agttaaaggt gataaggtaa 7140 attcattgcc atttctagtc ttcacagaac ctatctctct ccatgtttga gaggtgtcag 7200 ttcttttaac ttgaatgcta ccatctttga cgtccacaac atcttctaga gctgcttttg 7260 aatgccctgt ggtgtcaatg cttagatcca ttaagcaagt tttcactagg ttaaaaaggg 7320 tcatggagaa atgtaaatct actttgctgc caccatacga tttatggtga atcagcttgg 7380 gctgttcgat gaacgaagtc ctgaaagatt gtattatagc attattatag ttgagatcat 7440 tcatttttag ttcttctgtc atcggtgacc aacaaataga gaaatttgtt tttgtctctt 7500 ggagatcatt tgtaaagcaa cctggatact ctttctggta ctctcctgca tttatgttga 7560 aagccgtttc tatgctatct atttctgttt ctttagcttt tttagataaa acatcagatt 7620 ttattttgtt gaaatgactt tcataaagtt cttcaaatgt atcttcattt ttgtctaaat 7680 acctttttaa ctcttcttct gtttcaatgg ggtcaacctt catcatttca cagtgtgctt 7740 tatacccctc aaacctgtct tttaagtgta aatcactcat agtatcttta aaatatagat 7800 agctaccaaa taaaaaatgg actatcatat ctttttttat tttctcattc ggcatagcat 7860 caattagatc aattatatct tggctagttt gattgttcgt taaatttgtt ttcctgtact 7920 catatgacca gtggctaaaa aagacttctg atgatctgtt catgtactcg cccacttttg 7980 ataaaagaga gtttttgaat gcttgagtct ctgcataaaa ccgcctaaag caatcagttc 8040 ccaatccaat aagctgtcct atagagttaa cagatatcaa ctttgctgca agagctgctt 8100 ttcttctatc attgaaagtt ctgtagggtg aatttctgag ttcctgaatc actctactcg 8160 tcgtagcagt aattgacata tttccactgg gattgagtat gactatggtg acaaatattg 8220 gatgcctttc caaaaagggc tggccatcta cagttatgtc tttaaatgtt ttccacacac 8280 tcgtgtaata attttcagat gttttagttt ctgacatagt atccacagag actttccagt 8340 catatatcat cagacatgct ctttcacccg atgtttcttt gtagattgta tagttatcag 8400 gtgtcaagtg ttggaagacc aatttttctt tcaggtcgtc aatattaggt attttattca 8460 taatagaggt agaggtattg caaaattcta tataagacat gagacagtct ttcaggaaga 8520 catctgatct atgtttagga gcaaaatgca actttcttcc agcaagtaca ccgaatagat 8580 catgtctcat cagttcaagt tctttatatt tatctaagaa taaaaagatt tctgtttcca 8640 tttctttttg atcaatagat gaagaacttt ggtggtatct agacttcatg tcttcaattt 8700 tatctaaaat ataattcatt gacattattg aattcaaacc agagtcaatg acacctttac 8760 cttcagggta acttctctcc acaatattcg acattgacat gatttcatct tttatccttt 8820 gtagatacac agtaatttcc cctgatgtat ctaggaaact gtttatagtt tggatgttca 8880 ttactgatat tttattgttg cacgattgct ct 8912 //