ID DQ256123; SV 1; linear; genomic RNA; STD; VRL; 3477 BP. XX AC DQ256123; XX DT 15-AUG-2006 (Rel. 88, Created) DT 15-AUG-2006 (Rel. 88, Last updated, Version 1) XX DE Capsicum chlorosis virus segment S, complete sequence. XX KW . XX OS Capsicum chlorosis virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; Orthotospovirus; OC Capsicum chlorosis orthotospovirus. XX RN [1] RP 1-3477 RX DOI; 10.1007/s00705-006-0749-4. RX PUBMED; 16601925. RA Knierim D., Blawid R., Maiss E.; RT "The complete nucleotide sequence of a capsicum chlorosis virus isolate RT from Lycopersicum esculentum in Thailand"; RL Arch. Virol. 151(9):1761-1782(2006). XX RN [2] RP 1-3477 RA Knierim D., Rosana B., Maiss E.; RT ; RL Submitted (21-OCT-2005) to the INSDC. RL University Hannover, Plant Pathology and Plant Diseases, Herrenhaeuser Str. RL 2, Hannover 30419, Germany XX DR MD5; 09e5727ea5bee92c75f3a7ffab2b554b. DR EuropePMC; PMC4439075; 25993336. XX FH Key Location/Qualifiers FH FT source 1..3477 FT /organism="Capsicum chlorosis virus" FT /segment="S" FT /host="Lycopersicum escultentum cv. King Kong 2" FT /lab_host="Nicotiana benthamiana" FT /isolate="AIT" FT /mol_type="genomic RNA" FT /country="Thailand" FT /note="serogroup: IV; acronym: CaCV" FT /db_xref="taxon:163325" FT gene 67..1386 FT /gene="NSs" FT CDS 67..1386 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q0P0H3" FT /protein_id="ABB83817.1" FT /translation="MSTSKGAASEFVKSYGTRDNRAVNDCYSVFSGEGVNFLNLFMHNN FT AGIKSAFSINELGRNEDIKIHEAEVIDTCHDYSYFEEFGLDITFCEHEMNLVVKKPGVK FT NTGCKFSMHNQIFNPNTDTLSITPGTISEETFYEKSKIKLDGLLPSDWCLDECCESNFY FT IATNGDFSLDYGFSVMGKTTSYWRENISREKILSFKHRSLPDNTVPTNRLLSTSIVKGI FT QLGSELASDTTVILSCKQNLDVDLKSQYRISFHGIQDEGAFARTFCIPFENKSRMICFY FT AKTVADNSNERTTLIIKMVTKTVDSHLMIPAKNHINCNRLMGARIGLVDFCNVDPNYNQ FT LIVKELLGVHTQFAMNLSGTLKKPIIVFKMYDKELINKHVEASGRILNYQVDAEGNIYF FT LSKTLEILPKSLSTLSYLNSVTPTSWKESLEHQHFTVELK" FT misc_feature 1387..2582 FT /note="intergenic spacer" FT gene complement(2583..3410) FT /gene="N" FT CDS complement(2583..3410) FT /codon_start=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q4KTR8" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q4KTR8" FT /protein_id="ABB83818.1" FT /translation="MSTVRQLTEKKIRELLAGGTADVEIETDDSTPGFSFKAFYDSNKS FT VEMTFTNCLNILKCRKQIFAACKSGKYKFCDKTIVSTAADVGPDDWTFKRTEALIRVKM FT INMIEKNKNEAAKQEMYSKVMELPLVAAYGLNIPASFDSCALRMMLCIGGPLPLLSSIK FT GLAPIIFPLAYYQNVKKEKLGIKNFSTYEQVCKVAKVLSASQVEFKEDLDKLFKQAVKL FT LSESNPGTASSISLKKYDEQVKYMDKVFSANLSVDDYGEHSKKSSKPSTSIEV" XX SQ Sequence 3477 BP; 1183 A; 598 C; 541 G; 1155 T; 0 other; agagcaatcg gggcttctaa taattcaaga aaaacaacga taagatcaag aaatactaat 60 tcaggcatgt ctacttcaaa gggtgctgct tcagaattcg tgaaaagcta tggaacgaga 120 gacaacagag ccgtcaatga ttgttattct gtcttctctg gagaaggtgt caactttctc 180 aatttgttca tgcacaataa tgcaggtatt aaatctgcat tcagcatcaa tgagctgggg 240 aggaatgaag atatcaaaat ccatgaagct gaggttattg atacatgcca tgattatagt 300 tactttgagg agtttggcct agatataaca ttctgtgaac atgagatgaa cctggtcgtg 360 aaaaagcctg gtgtgaagaa cacaggctgc aaattctcca tgcataatca gatcttcaat 420 ccaaacactg ataccctatc tattactcca gggacaattt cagaggaaac tttttatgag 480 aagagtaaga taaaacttga tggactcctt ccttcagatt ggtgtttgga tgagtgctgt 540 gagagcaact tctacatagc caccaatggt gatttctccc tggattacgg gttttctgtg 600 atgggcaaga cgacttctta ttggagagag aacatatcga gggaaaagat tttatctttt 660 aaacacagaa gtcttcctga caacactgtt ccaactaaca ggttattgtc aacatctatt 720 gtcaaaggca ttcagctagg ttctgagcta gcttctgaca ctacagtgat actatcatgc 780 aaacaaaatc tcgatgttga tctcaaatct cagtatcgta tttcatttca tggcattcaa 840 gatgaaggtg cttttgccag gactttctgc attccatttg aaaacaagtc taggatgatt 900 tgcttttatg caaaaactgt tgctgacaat agcaacgaaa ggacaactct aatcattaag 960 atggtcacaa aaactgttga ttctcatctg atgatacctg ccaagaacca cattaactgc 1020 aacagattaa tgggagcaag aatagggcta gttgattttt gtaatgttga tccaaactac 1080 aatcaactga ttgtaaagga actattgggt gtccacactc aatttgcaat gaatttgtcc 1140 ggtactctaa agaagccgat cattgtattc aaaatgtatg ataaagaact aataaataaa 1200 catgttgaag cttcaggaag gattctgaac taccaagtag atgcagaagg aaatatctac 1260 tttctttcaa agactcttga aatcctacct aaatctcttt caactttgag ttacttaaat 1320 agtgttacac caacatcatg gaaagaatct ttggaacatc agcacttcac tgtagagctc 1380 aaatgacctt aaggagcacg atacgatata attattctat tttaattatc taaataaata 1440 gctatagatt gtaaacttta caaatagata taattatatg tatatatatc tatatatgca 1500 tatatatata tatatgcata tacatacata tatatgtata cttatataca tatatacaga 1560 tatgcatata aacataaaat ataaatacat ataaatatat taataagtaa atatagtaaa 1620 taatttaaat gcaagtttaa gtcatgctta atttaattaa acacattgct acaaatctaa 1680 ttattgtaaa ctttattgga aataagtgaa tctcaattac ataatcaaat aagttgaaaa 1740 tccataaaaa tcaaaaacaa aaaaccaaaa aagacctcga aagaggcaaa cttggcttaa 1800 ttatttcaaa attaaaacta tagttgctat ttagtccatt ttttggacac ttatttttac 1860 attaacactt caagtgaatt tgtctatcat tgaccattat ttaaactcta ttaaataaca 1920 tgttatatct aaagagcaaa attagggcta agaatttaac tatctgatct aatttagtaa 1980 agtcatctac ttatttagca taacttattt aaagccttcc tctaaatact tacttaagta 2040 aattaaatta tttatttaat aacccactga ttcatttgat caagaaattt gatttgagca 2100 aacaatttaa gatactgaac tcatcttgat ggatcattgt aatacatcca gtctaactat 2160 ttataagaga gcacaccagt ctgctgaggt aattaaataa tttagattca tgattataat 2220 aggccaacag tttgcctccg aagaggtctt tttggatttt tttgtttatt gattttttgg 2280 attttttgtt tttgattttt tgggtttttg aatattttca attctactta tctgtattta 2340 tgaacataca tatacatata tatatatacc tatatgtata tatatatata tttatgtata 2400 tcttggttac acacagatat ataagtttat gaacatactt taaactactt aaatacttgt 2460 ttacctatac taatacaaat taagcaaata aacatgattt agcttgtaaa caaacatgta 2520 gtgaatatat gtatataaac aaatatatat atttttatat ataagtaatt attttgctta 2580 aatcacactt caatagatgt actaggcttt gagctcttct tcgagtgctc accataatca 2640 tccacagaca aattagcact gaaaactttg tccatgtatt taacttgctc atcgtatttc 2700 ttaagtgaga tagagctggc agttccaggg ttgctctcac tgagcagctt gacagcttgc 2760 ttaaacaact tatctaaatc ttctttaaac tcaacttgag aagcagaaag aaccttagct 2820 accttgcaaa cctgttcata agtagagaaa ttcttaattc ccaatttctc ctttttaaca 2880 ttctgataat aagctaatgg gaaaatgatt ggtgcaaggc ctttaatgct agacaaaagg 2940 ggtaaaggcc ctccaatgca tagcatcatt cttaaagcgc aagagtcaaa tgaagcagga 3000 atattcaacc cataagctgc cactaatggc aactccatca cctttgaata catctcctgc 3060 ttagcagctt cattcttgtt cttctctatc atattgatca tcttaactct tatcaaggct 3120 tctgttctct taaaagtcca gtcatctgga ccaacatcag cagccgtgga aacaattgtt 3180 ttgtcacaga atttgtactt tccacttttg caagcagcaa agatctgctt cctgcacttt 3240 aggatattca agcagtttgt gaaggtcatt tcaacacttt tgttactatc ataaaacgct 3300 ttaaagctaa atccaggagt tgaatcatca gtttctattt ccacatctgc agttcctcca 3360 gccaagagtt ccctaatctt cttctctgta agttgcctga cggtagacat ggtgtttact 3420 ctggaaacgt ctaatgtgat gactttgttt ggattttatt agtgcctcga ttgctct 3477 //