ID DQ256073; SV 1; linear; genomic RNA; STD; VRL; 3923 BP. XX AC DQ256073; XX DT 05-APR-2006 (Rel. 87, Created) DT 05-APR-2006 (Rel. 87, Last updated, Version 1) XX DE Pelargonium flower break virus isolate SP18, complete genome. XX KW . XX OS Pelargonium flower break virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphacarmovirus. XX RN [1] RP 1-3923 RA Rico P., Hernandez C.; RT "Infectivity of in vitro transcripts from a full-length cDNA clone of RT Pelargonium flower break virus in an experimental and a natural host"; RL J. Plant Pathol. 88(1):103-106(2006). XX RN [2] RP 1-3923 RA Rico P., Hernandez C.; RT ; RL Submitted (21-OCT-2005) to the INSDC. RL IBMCP, CSIC, Avenida de lo Naranjos, Valencia, Valencia 46022, Spain XX DR MD5; f8315134cf0a3aee4cc1eda727362c28. XX FH Key Location/Qualifiers FH FT source 1..3923 FT /organism="Pelargonium flower break virus" FT /host="Pelargonium x hortorum" FT /lab_host="Chenopodium quinoa" FT /isolate="SP18" FT /mol_type="genomic RNA" FT /country="Spain" FT /db_xref="taxon:35291" FT gene 33..2303 FT /gene="p86" FT CDS 33..2303 FT /codon_start=1 FT /transl_except=(pos:762..764,aa:OTHER) FT /gene="p86" FT /product="RNA-dependent RNA polymerase" FT /note="translation requires read-through of stop codon" FT /db_xref="GOA:Q1WIR6" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q1WIR6" FT /protein_id="ABB79925.1" FT /translation="MLRFGSQLVVGSTLIGGLTAVGLAGLSVRATIGVVEFNLRCARVV FT GDIIRDPFNALPSAPLFPGPSVEVFAEEVRKDLEPELEAKDYLVIHEEKEVDEEGKSKV FT VRQRSTVNRHKKGRFVHRLVCDGKNHFGGTPSASRANELAVMKYLVGKCREHRLVVQHT FT REVCSLAMAAIFTPDHHEVNMVREMNSHAAYRRRVALADAARVHSWQQELLRSPLSWNA FT WGRAWWIANGLPDREPVRFTKXGGLFCLEGVETGVRRGTHPQMIEVEKNSPPKLRKLFA FT QRLVSSGVEYRVHNHSFQNLRRGVLERVFYVEENKQLVSCPCPEKGAFKEMGYLRRQFV FT RLTPKHARISAKEFVDCYHGRKKSVYEFAAMTLSERPLDRKDASLKTFIKAEKFCKADP FT APRVIQPRSPRYNVELGRYLKKFEHSAYRTLDKIWGGKTVMKGYSVDEIGKHISEAWDS FT FHSPVAVGFDMSRFDQHVSVPALQFEHSCYLACFPGDQHLAELLSWQLKNFGVGFASNG FT MVRYKKDGCRMSGDMNTALGNCLLACLITRHLMKDINCRLVNNGDDCVLFLDKKDLPFV FT VSNLTTGWRRFGFKCIAEEPVYELEHVRFCQMAPVYDGSQYVMLRDPFVSMSKDSFSLT FT HWNTTKNAKQWMKSVGICGERITGGLPVVQEYYRKYQEIAGDVKFSHSLEITSSGTYRL FT AQNSSRAYGSVSEMARFSFFLAFGVIPDAQIALEKHIRDMPVAAEFGPDESLADHTIEW FT LLK" FT gene 33..764 FT /gene="p27" FT CDS 33..764 FT /codon_start=1 FT /gene="p27" FT /product="putative polymerase-associated protein" FT /db_xref="UniProtKB/TrEMBL:Q1WIR5" FT /protein_id="ABB79924.1" FT /translation="MLRFGSQLVVGSTLIGGLTAVGLAGLSVRATIGVVEFNLRCARVV FT GDIIRDPFNALPSAPLFPGPSVEVFAEEVRKDLEPELEAKDYLVIHEEKEVDEEGKSKV FT VRQRSTVNRHKKGRFVHRLVCDGKNHFGGTPSASRANELAVMKYLVGKCREHRLVVQHT FT REVCSLAMAAIFTPDHHEVNMVREMNSHAAYRRRVALADAARVHSWQQELLRSPLSWNA FT WGRAWWIANGLPDREPVRFTK" FT gene 2288..2494 FT /gene="p7" FT CDS 2288..2494 FT /codon_start=1 FT /gene="p7" FT /product="putative movement protein" FT /db_xref="GOA:Q1WIR4" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q1WIR4" FT /protein_id="ABB79926.1" FT /translation="MASKVIVPDLGSDNEIDVPVGGRGNRGKQKGKISVAKDAVSKRTS FT DGGNGGSWVVVAETVSVNIHFNF" FT gene 2328..2648 FT /gene="p12" FT CDS 2328..2648 FT /codon_start=1 FT /gene="p12" FT /product="putative movement protein" FT /db_xref="GOA:Q1WIR3" FT /db_xref="UniProtKB/TrEMBL:Q1WIR3" FT /protein_id="ABB79927.1" FT /translation="MRLTCQWEDVGIGGNRRVRYPSQRTLSPNGHLMVVMGVLGLLWLR FT PFRSIYTSTFSMPPLINLQHILNLTLLSLILSSFILAERVTHNHYSNDNSKAQYIRIST FT GQ" FT gene 2650..3687 FT /gene="CP" FT CDS 2650..3687 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q1WIR2" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR013669" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q1WIR2" FT /protein_id="ABB79928.1" FT /translation="MDVYKNDPIVRQAVAKGVAWAVKLNTRGWSSLTTQQKKAARSALS FT VIQSPAVVVPRRTRVRNPVPAGLKSGNGKAGKSSTLTRSEFICNVSSTTGVTPTFQSWI FT INPREVKSFPQSSVCSVGYNKYRITDFRIRFSTSCSDTMNGKVAIGFTPDSSDPVPVDK FT SQLYGMQVYADTPAKESVTLKTAADNTIRFLRDSSSDDAKLVDYGRVVLATYGFDSTAP FT SVIGELFFEYTVVYLDPTYVVALTQHGTLTTSSGPPYATLTTTATSTSMELNTHGKWLV FT VWVSADEVINSPVISGSGASGSVTVVSDAQTTVVAVVTANLPGAIISNTSTAAPSSLEW FT YVSRL" XX SQ Sequence 3923 BP; 991 A; 927 C; 1085 G; 920 T; 0 other; gggatacatt acactcggta tctggttcca acatgctacg attcggatct cagttagtgg 60 tgggttctac cttaatcggt ggtctcactg ctgtcgggct ggcaggcctg agcgtgcgtg 120 ctacaatagg tgtagtggaa ttcaacctcc gctgtgctag agtggtgggt gacatcatac 180 gtgacccatt taatgccctc ccttcggccc ctctattccc cgggcccagc gttgaggttt 240 tcgctgagga ggtgaggaag gacctcgagc cggagcttga ggctaaggat tacctcgtca 300 tccacgagga aaaagaagtg gatgaggagg ggaagagcaa ggtggttagg cagaggtcta 360 ctgtcaaccg ccacaagaag ggccggtttg tccatcggct agtctgtgat gggaaaaacc 420 actttggtgg gaccccttca gctagccggg ccaacgagct ggccgtaatg aagtatctcg 480 tgggtaagtg ccgcgagcac cgcttagtgg tgcagcacac ccgcgaagtc tgctctctgg 540 cgatggctgc tattttcacc ccagaccacc atgaagtaaa catggttagg gagatgaaca 600 gccacgctgc ctaccgaaga agggtagctc ttgcagatgc cgccagagtc catagctggc 660 agcaggagct actccgctca cccctgagtt ggaacgcttg ggggagggcg tggtggatag 720 ccaacgggct tcctgacagg gagcctgtcc ggttcaccaa ataggggggt cttttctgcc 780 tcgagggtgt tgaaacagga gtccgtaggg ggacgcaccc acagatgatc gaggtagaga 840 aaaactcccc cccgaaactt aggaaactct tcgcccaacg gttggttagc agtggagttg 900 aataccgcgt gcataaccac tcgtttcaaa acctaaggcg aggtgtgctt gagagagttt 960 tctacgtgga agaaaataag cagttagtat cgtgtccctg tccggaaaag ggggccttca 1020 aggaaatggg ttacctacga aggcaattcg ttagacttac tcccaaacat gccaggatct 1080 cagcaaagga atttgttgat tgctatcatg gtaggaagaa gagtgtctac gagtttgctg 1140 ccatgaccct ctctgagaga cctctggacc gcaaggatgc cagcttgaag acgtttataa 1200 aggccgaaaa attttgcaag gccgacccag ctccccgggt tatacaacca agaagtccgc 1260 gctacaacgt tgaattaggc cgatatctca agaaattcga acactcggcc tacagaacgc 1320 tggacaagat ctggggagga aagaccgtga tgaaagggta ctctgtggat gagataggga 1380 aacatatctc agaggcgtgg gattcattcc actctccggt tgctgtcgga ttcgacatga 1440 gccggttcga ccagcacgtt agtgtgcctg cgcttcaatt cgaacacagt tgttaccttg 1500 cctgttttcc cggagaccag catttggcgg aactcttgag ctggcagctc aagaattttg 1560 gcgtagggtt cgcgtcaaat ggaatggtta gatataagaa ggatgggtgt agaatgtccg 1620 gagacatgaa cactgcactg ggaaactgcc tattggcttg cctcataact aggcacctca 1680 tgaaggacat aaattgtcga ctcgtcaaca acggggatga ctgtgtattg ttcttggata 1740 aaaaggacct cccattcgtc gtgagtaatt taacgacggg ctggcgtagg ttcgggttca 1800 agtgcattgc agaggagcca gtatacgagc tagagcacgt gaggttttgt cagatggccc 1860 cagtgtatga tggatcgcaa tacgtcatgt tgcgtgatcc gttcgtgtcc atgtcaaagg 1920 atagtttttc actcacccat tggaacacca caaagaatgc caaacaatgg atgaaatccg 1980 tgggcatctg tggtgaaagg attacaggtg ggttaccagt tgtgcaagaa tactacagaa 2040 agtatcagga aattgctgga gacgtgaagt tctctcattc cctagagata acctcatctg 2100 gaacgtacag gttagcccag aattcttctc gggcctatgg ttcagttagc gagatggcgc 2160 gttttagttt cttcctggca tttggagtta tcccagatgc tcagattgcc ttggagaaac 2220 acataagaga catgcccgtc gcagctgaat ttgggcccga tgaaagtctg gcagaccaca 2280 caattgaatg gcttctaaag tgatcgttcc tgatttgggt agtgataatg agattgacgt 2340 gccagtggga ggacgtggga atagggggaa acagaagggt aagatatccg tcgcaaagga 2400 cgctgtctcc aaacggacat ctgatggtgg taatgggggt tcttgggttg ttgtggctga 2460 gaccgtttcg gtcaatatac acttcaactt ttagcatgcc ccctctgata aacctccaac 2520 acatattgaa tcttaccttg ttgtccctga ttctaagttc tttcatcttg gcagagagag 2580 taacgcacaa tcactactca aacgacaaca gcaaagcgca atatatacgg atctcaactg 2640 ggcaataaca tggacgtcta caagaatgac ccaatagtta ggcaggcagt ggcaaaggga 2700 gtagcttggg cggttaagct gaacactaga gggtggtctt cattgaccac ccaacagaag 2760 aaagctgcgc gctcagctct gtctgtgata caatccccag cggtggttgt acctcgcaga 2820 accagagtac gaaacccagt acccgcgggc ctgaaatcag ggaatggcaa ggcagggaag 2880 agctcaactc taacccgatc ggagtttatc tgcaacgtat cgagcacaac cggagtgacc 2940 ccgactttcc aatcatggat cataaatcct agggaggtca aaagtttccc acaatcttcc 3000 gtctgctcgg ttggctacaa caagtacagg atcacggact tcaggattag gttttctact 3060 tcctgttccg acactatgaa tgggaaggtg gccattggct tcactcccga ctctagcgat 3120 ccggttcctg ttgataagtc acagctgtac gggatgcagg tgtatgccga cactccagca 3180 aaggagtcgg tcaccttgaa aacggctgcg gataatacga tcaggttcct gcgggattca 3240 tccagcgatg atgccaagct ggtggattat ggccgcgtag ttttagccac atacggtttt 3300 gatagcacag ctccgtcagt gattggagag ctgttcttcg aatacaccgt agtctatctc 3360 gaccctacct atgtcgtggc tttaacacaa catggcacgt tgaccacctc atctggcccc 3420 ccatatgcta ccttgaccac cactgccact tcaacatcca tggaattaaa cacccatgga 3480 aagtggctag tggtttgggt ctcggcagac gaggtgatca actctccggt tatatccggg 3540 tccggggcaa gcggatccgt aactgtcgtt agcgacgcac agactactgt tgttgcagtg 3600 gtcaccgcaa acttgccagg cgccatcatt tccaacactt caaccgctgc cccttcgtca 3660 ctggagtggt acgtatctag gctatgagag ggcagtcacc ctaccttctg ccagaggttc 3720 ccggaggagt agtgatcctt tgggggtgat tcatagctag gaaaggtcgg agagttggga 3780 ggaggccaaa tgggggaggt gctaggagca ccagaggcag cagagcaaaa atccgggttt 3840 catcgcctgg tgcgggcgct caatgctgct aacaagttcc agaaggaaga aaggttttgg 3900 tcgatggaga ccttaacccg ccc 3923 //