ID DQ238861; SV 1; linear; genomic RNA; STD; VRL; 6276 BP. XX AC DQ238861; XX DT 03-NOV-2005 (Rel. 85, Created) DT 13-SEP-2009 (Rel. 102, Last updated, Version 3) XX DE Giardia canis virus from China, complete genome. XX KW . XX OS Giardia canis virus OC Viruses; Riboviria; Totiviridae; Giardiavirus. XX RN [1] RP 1-6276 RX DOI; 10.1016/j.vetpar.2006.07.029. RX PUBMED; 16982153. RA Chen L., Li J., Zhang X., Liu Q., Yin J., Yao L., Zhao Y., Cao L.; RT "Inhibition of krr1 gene expression in Giardia canis by a virus-mediated RT hammerhead ribozyme"; RL Vet. Parasitol. 143(1):14-20(2007). XX RN [2] RP 1-6276 RX DOI; 10.1016/j.exppara.2009.07.001. RX PUBMED; 19619539. RA Cao L., Gong P., Li J., Zhang X., Zou X., Tuo W., Liu Q., Wang Q., RA Zhang G., Chen L., Li L., Su L.; RT "Giardia canis: ultrastructural analysis of G. canis trophozoites RT transfected with full length G. canis virus cDNA transcripts"; RL Exp. Parasitol. 123(3):212-217(2009). XX RN [3] RP 1-6276 RA Chen L., Li J., Zhang X.; RT ; RL Submitted (12-OCT-2005) to the INSDC. RL Department of Veterinary Preventive Medicine,College of Animal Science and RL Veterinary Medicine, Jilin University, 5333 Xian Road, Changchun, Jilin RL 130062, China XX DR MD5; d24a1c1d579108e25f450b6f0479b184. DR EuropePMC; PMC4119202; 25030031. XX FH Key Location/Qualifiers FH FT source 1..6276 FT /organism="Giardia canis virus" FT /strain="Changchun" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:353633" FT CDS join(367..2808,2808..5981) FT /codon_start=1 FT /ribosomal_slippage FT /product="gag-pol fusion protein" FT /db_xref="GOA:Q307I8" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:Q307I8" FT /protein_id="ABB36743.1" FT /translation="MVWGTGYGNTSPLNPYGFASLHRGGLNPLIFLAPENITFDTLNTQ FT NDHEETYGESPEVPKASIAPAGRQNVPVLQQKQENEDNHALGGSEDAKDEREIQFSAIK FT TLYNYYSEGPSIPIMPHLVNRLRGLVALAKVDATLSKVDMNAAYIFPLRPTFPYSYGYK FT QRFTNRRLSTSALCYARTGLSSFLTVDKTYTSNSPLKGGSRGWPIFNIGVSPHVAEPHM FT RTLSPIGLEVFNLATSQFSKTLLTASSKVFTQSLYTADILSIFGEVFLPHVMQPVSNYP FT PILVRALLALIHILGPGSGNCSLSSSIFESSIPQFLTISHSTNMSNRTRYCLHTWSAYK FT DMFRIGIPPHSTFPPTLAPEGSSARILIPAALVTSPMFPWLLVLVSSGPQFFLYSKDAS FT INTVDIGSRGRITSPISDVAHLDLHRLWNLFRFDGYRYIDVVIVGVGRDYVWPYQNGVY FT VHGGKGPKGTDNYENADVHDGIGTIFSSFNNNVNVQTSDLLLGLSTLWNHIATTYATEE FT EVTMAIKIAAAFALVYPVQPIVYSGCSSAFHNHTSYFQPSSENCYTTDTAEVKSTWDTV FT ELSVQLNDAMVLGMTLPFGQPTVSSARWFNNIDKAEISMFKVGNLPLQKLVYLSLDMME FT FYAPTTGQLYDIRSDNLISSAHRTVNLGIGYTAVADFFAYLASVPAQSFYHDRMVTSPI FT SKQAYSVYERFIERFIDDFVGWGRCDLFNLDTLLHAKHIVGVPSSLIPWHCSLQRCALP FT IIMHYTGQHFGQEHITVRDVAGVQGLQQIVLRNDQGSIVLDALGTAARSRLAVKLDWSK FT LGCLVLRYNLRHPFIGSCDGDRQLRSNMGSYAGKTRTGFVYTYFSPNFLSSFNVSEPIF FT HKAINLTPRYDDTSQTVIQNMSMPQMLSFDPYYESTFYVVSADNEWIPTSGPAWKVPYL FT ENVVKRSGRRLLAELRIASNNGSGDRTFLTTCKTRKGRHYAYFSAALGGKILEFVCAPL FT SSISLQGGQTIYAPIQLQDAIPVRREDPVPGSIYAVFKFFSEPKAWEIRALKSYKVRFQ FT DLPSHIVISELKERAARSYIGSRGYVDTGFKGLDIYIDILSQMELPKYIHELLVLLRGK FT VCEVSRLYKKEQVFIILLTVFSELTAIVRHRGNKSTGSMGRMCTLLSDFETLLGKVSYK FT NRSIIEEQVVPWLTSDPIPRTPDFYSTYFKMAVQFMHSTFVPVTLRSAPPLTFYEYCAR FT SELWGTTGSGYIGYGKRSFNKWSIYGAYPTEEIYRXALYGDNPPLKPLEKPELTKVRAV FT ISASFQSYILMSYLEYIMADTLVDKAFTTTLMNDRQYENLERHMMTMTGGVRVPVDQSN FT FDRQPDLVQIGIWQQLLFHLASASAPYRARDSVSLVISRLASTTTFPNLKVRMSDGDKR FT VLDGLPSGWKWTALLGALINVTQLLTMAELSNTLASLRSTVVQGDDIALSMTDREQATQ FT LVDTYARQGLEVNPKKFWISPDRDEFLRRVATPGIVAGYPARMMIKLLYQLTEPEEPSH FT YISMLPKLAKVPNMVREYVSPRSDVPWSETVEELDWREALAILRHRPARTSELVTQWLQ FT LIGRFTAAHPDKRALTLLYHWFVRDLTHATKIKKRNLLVLLQQPGFWGGYSQSLVGLLR FT TTHLADMIVSELDIGLPGPRATSNRFGTSPTSLAPHYLTLIVPSSVHVQSQKELDLWGL FT CRSSIYAKHYSNIFRYYKLTLPTLVLWAQRLGDKHVTDFIRSVTLGSEIPKYDPHTRLF FT TSNGVSVGTLIRIRVRHFTHRVLRRETPKCIPVIVGLYREQTLSVPESVRLSEPDKILS FT SLQRASGYSLSLVKKILQITRKPVDHPVDARFSQAFPNNWSDLARTAGTFLLTVPA" FT CDS 367..3030 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="UniProtKB/TrEMBL:Q307I7" FT /protein_id="ABB36742.1" FT /translation="MVWGTGYGNTSPLNPYGFASLHRGGLNPLIFLAPENITFDTLNTQ FT NDHEETYGESPEVPKASIAPAGRQNVPVLQQKQENEDNHALGGSEDAKDEREIQFSAIK FT TLYNYYSEGPSIPIMPHLVNRLRGLVALAKVDATLSKVDMNAAYIFPLRPTFPYSYGYK FT QRFTNRRLSTSALCYARTGLSSFLTVDKTYTSNSPLKGGSRGWPIFNIGVSPHVAEPHM FT RTLSPIGLEVFNLATSQFSKTLLTASSKVFTQSLYTADILSIFGEVFLPHVMQPVSNYP FT PILVRALLALIHILGPGSGNCSLSSSIFESSIPQFLTISHSTNMSNRTRYCLHTWSAYK FT DMFRIGIPPHSTFPPTLAPEGSSARILIPAALVTSPMFPWLLVLVSSGPQFFLYSKDAS FT INTVDIGSRGRITSPISDVAHLDLHRLWNLFRFDGYRYIDVVIVGVGRDYVWPYQNGVY FT VHGGKGPKGTDNYENADVHDGIGTIFSSFNNNVNVQTSDLLLGLSTLWNHIATTYATEE FT EVTMAIKIAAAFALVYPVQPIVYSGCSSAFHNHTSYFQPSSENCYTTDTAEVKSTWDTV FT ELSVQLNDAMVLGMTLPFGQPTVSSARWFNNIDKAEISMFKVGNLPLQKLVYLSLDMME FT FYAPTTGQLYDIRSDNLISSAHRTVNLGIGYTAVADFFAYLASVPAQSFYHDRMVTSPI FT SKQAYSVYERFIERFIDDFVGWGRCDLFNLDTLLHAKHIVGVPSSLIPWHCSLQRCALP FT IIMHYTGQHFGQEHITVRDVAGVQGLQQIVLRNDQGSIVLDALGTAARSRLAVKLDWSK FT LGAWYSDTTCAIPLSDRVMEIVNYAAIWDPTQERRAQVSCTHTLAPTFFRALTCLSLYS FT TRPSTLHHVTMTRAKL" XX SQ Sequence 6276 BP; 1610 A; 1562 C; 1554 G; 1549 T; 1 other; ggaaggagtg ccaggccatt accctccgcc cctgcctaac aaaactggct taccagaggc 60 gggggggcgt ggtagacggt atgtctaggt ccagagaaag cggtcgctgt taagccgctg 120 gacttcgcca cgcttacacc atcgagaaca cataagtggt gtaatattat gtgtttggct 180 gcgtgtgtca cgagcacgac ccatggagga atctaaccca ggtggtgttg tgtatgataa 240 ggtacaagcc cgtcaacacc acaggtggag agggacagga gtcccatttc ccctctagaa 300 aacagcagtg gtccgcccct catgccctat gaaacgttag ggggccgaca ctagtgggca 360 agcccgatgg tgtgggggac tggatatggg aacaccagtc cgttaaaccc gtacggcttc 420 gccagcctac accggggggg gcttaatccc cttatttttt tggcacctga aaatattact 480 tttgacactt tgaacacaca gaatgaccac gaggagacct acggagagtc tccagaggtt 540 cctaaggcct cgatcgcgcc tgccgggagg cagaatgtcc cggttctcca acaaaaacaa 600 gaaaacgaag ataatcacgc gctgggcggc agcgaggacg ccaaagacga gcgcgaaata 660 cagttttcag ctattaaaac tctctacaat tattactcag aaggtccttc gatcccaatt 720 atgccacatt tagtcaacag gttacgagga ttagttgctc tagccaaggt agacgcgacg 780 ctgagcaagg tggatatgaa cgcggcctac atattccccc tgagaccgac ttttccgtat 840 tcgtatgggt ataaacaacg tttcactaac aggagattga gcactagtgc gctttgctac 900 gcaaggacag gcctatcctc atttctgaca gtcgacaaaa cgtacacgtc caactctcca 960 ttaaaagggg gctctagagg gtggcccatt tttaacatag gtgtttcgcc acacgtggcg 1020 gagcctcaca tgaggacatt gtcacctatc ggtcttgaag tattcaatct ggctacttct 1080 cagttttcga aaactctatt aactgcatca tcgaaagtct tcacgcagtc actctacact 1140 gctgacatac tatcgatctt tggtgaggtg ttcctgccac acgtgatgca accggtctca 1200 aactaccctc caatacttgt gagggcgcta ttggccttga tccacatact ggggccagga 1260 tctggtaatt gctcactttc atcgtctatc tttgagagtt caattccaca attcttaacg 1320 ataagccata gtacaaacat gtcgaacaga acgaggtact gcttacatac atggtctgct 1380 tacaaggata tgttcagaat cggtatccca cctcactcga cgtttccacc gacgctcgcg 1440 ccagaggggt cctctgctcg gattctaatc ccagcggccc tagtgaccag ccctatgttt 1500 ccatggttac ttgtattagt ctcgagcggc ccacagttct tcttgtattc aaaggacgct 1560 agtattaata ccgtagacat cggttcgagg gggaggatta catcaccaat ctctgacgtc 1620 gcccaccttg atctccacag actctggaat ctcttccgtt ttgatggtta ccgctatatc 1680 gacgtggtca tagtgggcgt aggtagagat tatgtgtggc cctatcaaaa tggcgtgtat 1740 gtacacggcg gtaagggacc caaaggtact gacaactacg agaatgctga cgttcacgac 1800 ggaataggga cgatattttc gtcctttaat aacaatgtta acgtgcaaac gtccgacctc 1860 ctgctaggct tatcgaccct gtggaatcac atagcgacta cgtacgctac tgaggaggag 1920 gttaccatgg cgattaagat tgcagcggct tttgccctcg tctacccagt acagcctatt 1980 gtctactctg gctgttcgag cgcttttcat aatcacacgt catatttcca gccctcatcg 2040 gagaactgct acacaaccga tacggctgaa gtgaagagca cgtgggatac ggtcgagctt 2100 agtgtacagc ttaacgacgc tatggtacta ggtatgacac taccgtttgg ccaacctaca 2160 gttagcagtg cacgatggtt taataacatc gataaggccg agatctctat gtttaaggtc 2220 ggtaatctac cgttacagaa gctcgtttat ctatctctcg acatgatgga attctacgct 2280 cctacgacgg gacaattgta cgacatacgt agtgataacc tgatctcgag cgcccatagg 2340 acggtgaacc tcggaatagg ctacacagcc gtggcagatt tcttcgccta tctagcttca 2400 gttcctgccc agagttttta ccacgacagg atggtcacct caccgatttc aaagcaggcg 2460 tactccgtct atgaacgttt tattgaacgt tttattgatg acttcgtggg ctggggcaga 2520 tgtgacctgt tcaaccttga tacattgtta catgcaaaac acatagtcgg ggtaccctca 2580 tctctaatcc cgtggcactg ctcgctacag agatgtgcac tacccataat catgcattac 2640 acaggccaac atttcggcca ggagcatata acagtcaggg acgtcgccgg ggttcaaggc 2700 ttacagcaga ttgtgttgag gaacgaccag ggtagtatcg tactagacgc cttgggcact 2760 gctgcacgat ctagacttgc agtcaaatta gactggtcta agcttggtgc ctggtactca 2820 gatacaacct gcgccatccc tttatcggat cgtgtgatgg agatcgtcaa ttacgcagca 2880 atatgggatc ctacgcagga aagacgcgca caggtttcgt gtacacatac tttagcccca 2940 actttctttc gagctttaac gtgtctgagc ctatattcca caaggccatc aaccttacac 3000 cacgttacga tgacacgagc caaactgtaa ttcaaaatat gtccatgcca cagatgctca 3060 gcttcgatcc ctactacgag tctacgttct atgtggtctc cgcggataac gagtggatac 3120 cgacttcagg gcctgcttgg aaggtaccat acctggaaaa cgtagttaag cggtctggca 3180 ggcgcttgct ggcggagctc aggatagcat ccaataacgg gtctggagac cgtaccttct 3240 tgacgacgtg taagacaaga aaaggaaggc attatgccta tttctctgct gctttggggg 3300 gcaagatcct ggaattcgta tgcgctccac tgtcgagtat cagtctccag ggcgggcaaa 3360 cgatctacgc tccgattcag ctccaagacg ccataccagt acgtagagaa gatccagtgc 3420 cagggagcat atacgcagtc tttaagtttt tctcagaacc aaaggcttgg gagatacgtg 3480 cacttaagtc ctacaaagtt aggttccaag atctcccaag ccacatagtg attagtgagc 3540 taaaagagag agcggcgaga agttatatcg ggtcgagggg ttatgtcgat acaggtttta 3600 agggtttgga catttatata gatattcttt cccaaatgga gctgccaaag tacatacacg 3660 agttattagt tttactcaga ggcaaggtgt gtgaagtttc gaggttgtac aagaaggaac 3720 aggtattcat aatactacta accgtattct ctgagctcac agccatagtt cgccatagag 3780 gtaacaagtc cacggggtcg atggggagga tgtgtacttt gttatcagac ttcgagaccc 3840 tgcttgggaa ggtgagctat aagaaccgga gtatcattga ggagcaggtt gttccctggc 3900 taacctcaga tcctatacca cgtacccctg atttctactc tacgtatttc aagatggcgg 3960 ttcagtttat gcacagcaca ttcgttcctg tcactctcag aagtgcccct ccgttaacat 4020 tttacgagta ctgtgcgagg tcggagctct ggggaaccac gggatccggc tacatcggct 4080 atggcaagcg cagtttcaac aaatggtcga tctacggagc ttatcctacc gaggagattt 4140 atcggcyagc actctatgga gataatccac ccctcaagcc gctggaaaaa cccgaactta 4200 cgaaggtacg tgctgtaatc tccgcctctt tccaatcgta catattgatg tcctacctcg 4260 agtacatcat ggcagacacc ttagttgaca aagcattcac tacaactctg atgaacgaca 4320 ggcagtatga gaaccttgag cgccacatga tgaccatgac cggaggagtc agggttccag 4380 tggaccagtc gaattttgat cgtcagcctg acttggtcca aataggcatc tggcaacagt 4440 tactatttca cctagcatct gcgtcagccc cgtacagggc ccgcgacagt gtctcactag 4500 tcatatcacg tttagcctca actacgacct tcccgaacct aaaggtacgg atgtcggacg 4560 gtgataaacg tgtgctagac ggcctcccct cggggtggaa gtggactgct ctgctggggg 4620 ctctcatcaa tgtgacacaa cttctaacca tggcggaatt gtccaacact ctggcctcgt 4680 tgaggtcaac ggtggtacag ggcgacgata tcgctctaag tatgactgac cgggagcagg 4740 ccacacagtt agttgacact tatgcacgtc aaggcttgga ggtcaacccg aagaagttct 4800 ggatatcacc cgaccgggac gaattcctcc ggagggtagc aacccctggt atagtcgcgg 4860 ggtacccagc tagaatgatg attaaattgt tatatcagtt gacggaacct gaagagccct 4920 cacactacat ctccatgttg ccaaagctag cgaaggtgcc taacatggtc cgggagtatg 4980 taagcccccg gtctgatgtg ccatggtcgg agaccgtcga agaacttgat tggcgcgaag 5040 ctctcgctat actgaggcat aggcctgccc gtacatcaga actggtgact caatggctgc 5100 aactgattgg taggtttaca gctgctcatc ctgataagcg agccttaact cttctttacc 5160 attggttcgt gagagacttg acgcatgcta caaaaataaa aaaaagaaat cttctggtcc 5220 tgttacagca gccgggcttc tggggaggtt attcccagag cctggttggc ttgttaagga 5280 ccactcacct cgcagatatg atagttagcg aactagacat aggactgcca ggtcctcggg 5340 ccacgtctaa tcgctttggg acatccccta cttcactggc cccgcactac ctcactctga 5400 tagttccgag tagcgtgcat gtgcagtcgc aaaaggaact ggatttgtgg gggctgtgca 5460 gatccagtat atatgctaag cactattcaa acatatttcg atactacaaa ctgactcttc 5520 ctacgttggt gctttgggcc caacggctag gtgataaaca cgtcaccgat ttcattagat 5580 ctgtcaccct gggttcagaa ataccaaaat atgacccgca tacgcgtcta ttcacaagta 5640 acggggtgtc agtaggaacg ttaataagga taagagtacg acattttacc cacagagtgc 5700 ttcgaagaga gacacctaag tgtatccccg taatcgtcgg gctataccgg gagcagacac 5760 tatccgttcc ggagagtgtt cgtctatcgg aacctgacaa gatactatca agcctacaac 5820 gggcgtcggg ttactcactg agtctagtta agaagatatt acagatcact aggaaaccag 5880 tggaccatcc ggtggacgcg aggttctcac aggcattccc taacaactgg agcgacttgg 5940 ctagaacggc tggcaccttt ttgttaactg taccggctta agaggtttca ggagacaatg 6000 ctagccttgt cgctgagcgt ttgggcttca accatagcag ccggcttgac gcaattttta 6060 ggtcaaggaa atttctcctt tgcctagtag cgtagctgct caaagaaaag aaaatactag 6120 taattactgc acacgatcgg tgggtcggcc agcatacggt ggtgtgcggt ccgagaacgg 6180 gactggcctt agtacggtca taagacctgg acacgtgtag aaactgtgcc ccctgtagac 6240 tccgttgcct gtaggaggca gcgtacgagg gggtcg 6276 //