ID DQ223770; SV 1; linear; genomic RNA; STD; VRL; 6302 BP. XX AC DQ223770; XX DT 26-APR-2006 (Rel. 87, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 2) XX DE Youcai mosaic virus isolate Impatiens, complete genome. XX KW . XX OS Youcai mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6302 RX DOI; 10.1007/s00705-005-0677-8. RX PUBMED; 16292595. RA Wetzel T., Njapo Ngangom H.O., Chotewutmontri S., Krczal G.; RT "Nucleotide sequence of a new isolate of ribgrass mosaic tobamovirus RT infecting Impatiens New Guinea"; RL Arch. Virol. 151(4):787-791(2006). XX RN [2] RP 1-6302 RA Wetzel T., Njapo Ngangom H.O., Chotewutmontri S., Krczal G.; RT ; RL Submitted (27-SEP-2005) to the INSDC. RL AlPlanta - Institute for Plant Research, RLP Agroscience, Breitenweg 71, RL Neustadt an der Weinstrasse 67435, Germany XX DR MD5; 2e51578811bb015ce4fc0ffc4c6fe37b. DR RFAM; RF00225; IRES_Tobamo. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6302 FT /organism="Youcai mosaic virus" FT /host="Impatiens sp. cv. New Guinea" FT /isolate="Impatiens" FT /mol_type="genomic RNA" FT /db_xref="taxon:228578" FT CDS 68..4861 FT /codon_start=1 FT /transl_except=(pos:3377..3379,aa:OTHER) FT /product="replicase read-through product" FT /db_xref="GOA:Q1L1D7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q1L1D7" FT /protein_id="ABB55800.1" FT /translation="MAQFQQTVNMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVLFSKSVSTEQTLLASNAYPEFEISFTHTQHAVHSLAGGLRTLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIFSYLSRLDRQKRPVPEYQ FT RAAFYNYAENPHFVHCDRPFQQCELSTVNGADTYAIALHSIYDIPADEFGAALLRKNVK FT ICYAAFHFHENMLLDCDSVTLEDIGATFQRAGDKLNFFFHNESTLNYTHSFCNIIKYVC FT KTFFPASQRYVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYRTSVDSEEFYKAMDDAWE FT YKKTLAMLNSERTIFKDSAAMNFWFPKVRDMVIIPFFDASITTGRMSRREVLVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLSHVQDEIVLKKFQKFDATAKELIWSSLCDALKGVFPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLEYKRTEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLDAF FT KELCQKKNVDPDVAAKVVVAIMNSELTLPFKKPTEEEVAEALSGEVVQEEGLSLSNNAS FT FPCVSNLKEGLVPACGLCPKGANFDRVDMDISEFHLKSVDAVKKGAMMSAVYTGKIKVQ FT QMKNYVDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDEGKPVCDQTWFRLAVSSDSLVYSDMGKLKTLTSCCRDGEPP FT EPTAKVVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGVTRADKDN FT VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSQCDVAYVYGDTQQIPFICRV FT ANFPYPSHFAKLVVDEKEDRRVTLRCPADVTHFLNTRYDGLVTCTSSVERSVSAEVVRG FT KGALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLE FT IISRTSPHVLVALTRHTTRCKYYTVVLDPMVNVISELGKLSNFLLDMYKVESGTQXQLQ FT IDTVFKGTNLFVPTPKSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNVKDCR FT IDFSKSVQVPKERPVFMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDT FT ASLVVEKFWDAYVVKEFSGTDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEY FT KHMIKSQPKQRLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDTSKFLF FT YTRKTPTQIEEFFSDLDSSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAQ FT VWRQGHRRTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDKVIKAAF FT CGDDSLIYIPKGLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDPL FT KLISKLGCKHIRDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAEVHKTAVGGAFVYC FT SIIKYLSDKRLFKDLFFV" FT CDS 68..3379 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:Q1L1D6" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q1L1D6" FT /protein_id="ABB55804.1" FT /translation="MAQFQQTVNMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVLFSKSVSTEQTLLASNAYPEFEISFTHTQHAVHSLAGGLRTLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIFSYLSRLDRQKRPVPEYQ FT RAAFYNYAENPHFVHCDRPFQQCELSTVNGADTYAIALHSIYDIPADEFGAALLRKNVK FT ICYAAFHFHENMLLDCDSVTLEDIGATFQRAGDKLNFFFHNESTLNYTHSFCNIIKYVC FT KTFFPASQRYVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYRTSVDSEEFYKAMDDAWE FT YKKTLAMLNSERTIFKDSAAMNFWFPKVRDMVIIPFFDASITTGRMSRREVLVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLSHVQDEIVLKKFQKFDATAKELIWSSLCDALKGVFPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLEYKRTEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLDAF FT KELCQKKNVDPDVAAKVVVAIMNSELTLPFKKPTEEEVAEALSGEVVQEEGLSLSNNAS FT FPCVSNLKEGLVPACGLCPKGANFDRVDMDISEFHLKSVDAVKKGAMMSAVYTGKIKVQ FT QMKNYVDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDEGKPVCDQTWFRLAVSSDSLVYSDMGKLKTLTSCCRDGEPP FT EPTAKVVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGVTRADKDN FT VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSQCDVAYVYGDTQQIPFICRV FT ANFPYPSHFAKLVVDEKEDRRVTLRCPADVTHFLNTRYDGLVTCTSSVERSVSAEVVRG FT KGALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLE FT IISRTSPHVLVALTRHTTRCKYYTVVLDPMVNVISELGKLSNFLLDMYKVESGTQ" FT CDS 4873..5670 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:Q1L1D5" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q1L1D5" FT /protein_id="ABB55801.1" FT /translation="MSYEPKVSDFLALTKKEEILPKALTRLKTVSISTKDVISVKESES FT LCDIDLLVNVPLDKYRYVGVLGVVFTGEWLVPDFVKGGVTVSVIDKRLENSKECIIGTY FT RAAAKDRRFQFKLVPNYFVSTADAKRKPWQVHVRIQNLKIEAGWQPLALEVVSVAMVTN FT NVVVKGLREKVIAVNDPNVEGFEGVVDDFVDSVAAFKAIDSFRKKKKRIGGRDVNNNKY FT RYRPERYAGPDSLQYKEENGLQHHELKSVPVFRSDVGRAHSDA" FT CDS 5405..5524 FT /codon_start=1 FT /product="putative 4K protein" FT /db_xref="UniProtKB/TrEMBL:Q1L1D4" FT /protein_id="ABB55803.1" FT /translation="MIRTSKVSKVWLTISSIRLLHSRRLTVSGRKRKGSEEGM" FT CDS 5594..6067 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q91PA5" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q91PA5" FT /protein_id="ABB55802.1" FT /translation="MVYNITSSNQYQYFAAMWAEPTAMLNQCVSALSQSYQTQAARDTV FT RQQFSNLLSAIVTPNQRFPETGYRVYINSAVLKPLYESLMKSFDTRNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLNELSNGHGLMNRAEFEVLLPWATAPAT" XX SQ Sequence 6302 BP; 1781 A; 1211 C; 1593 G; 1717 T; 0 other; gttttatttt tgttgcaaca acaacaacaa attacaataa tttaaaacaa atacaaacaa 60 caacaacatg gcacaatttc aacaaacagt aaacatgcaa acattgcagg ctgccgcagg 120 gcgcaacagc ctggtgaatg atttagcctc gcgacgcgtt tatgacaatg ctgtcgagga 180 gctaaatgca cgctcgagac gccctaaggt tcttttttcc aaatcagtgt ctacggaaca 240 gacgctatta gcttcaaatg cttatccgga gtttgagatt tcctttactc atacccaaca 300 tgccgtacac tcccttgcgg gcggcctaag gactcttgag ttggagtatc tcatgatgca 360 agttccgttc ggttctctaa cgtacgacat cggtggtaac tttgccgcgc accttttcaa 420 aggacgcgac tacgttcact gctgcatgcc aaacttggat gtacgtgata tagctcgtca 480 tgaagggcat aaggaagcaa tcttcagcta cctttctcgc ctagataggc agaagcgacc 540 cgtccccgaa tatcagagag cggcattcta taactacgca gagaatcctc atttcgttca 600 ttgtgaccga ccatttcagc agtgtgagct gagcaccgtt aacggtgcgg acacttacgc 660 tattgcactt cacagtatat atgatattcc agctgatgag ttcggtgcgg cgctactcag 720 gaagaatgtg aaaatttgtt acgcggcttt ccatttccac gaaaatatgc tcctagactg 780 tgactctgtc acactggagg acattggagc cacatttcaa cgcgctggtg acaagttgaa 840 tttcttcttc cacaacgaga gtacactcaa ttacacccat agtttttgta atataattaa 900 gtacgtgtgt aagaccttct ttcctgcgag tcagcgttat gtgtatcata aggagttttt 960 agttactaga gttaatacgt ggtattgtaa gtttaccaga gtcgatactt ttactctttt 1020 ccgtggtgtg tacaggacaa gtgtggatag cgaggagttc tacaaggcta tggacgatgc 1080 gtgggaatac aagaagacct tggctatgct taactccgag aggaccatct tcaaggatag 1140 tgctgccatg aatttctggt ttccaaaggt tagagatatg gtcatcatac ctttctttga 1200 cgcatctatc acaaccggaa ggatgtcgag aagggaagtg ttggtgaaca aggattttgt 1260 ttacacagtc cttaaccaca tcaaaaccta tcaagcaaag gccttaacat atgctaatgt 1320 attatctttc gttgagtcta ttaggtctag agttataatt aacggtgtca ctgccaggtc 1380 ggaatgggat actgacaagg caatcttagg tccgttagcc atgacatttt tccttgttac 1440 aaagttgagt catgttcagg acgaaatcgt ccttaagaag ttccaaaagt ttgacgccac 1500 tgccaaagaa ctgatttggt caagtctctg cgatgccctg aagggggttt ttccctcggt 1560 caaagagact ctcgcgcgtg gtggtttcgt taagctcgct gaagaaagtt tagagatcaa 1620 aattccggag ttatattgca cttttaccga caggttagtg cttgaatata agaggacaga 1680 ggagtttcag tcgtgtgatc tgtccaaacc tttggaagag tctgagaagt actataacgc 1740 gttatccgag ctgtctgtgc ttgaaaacct tgactcgttt gatctggatg cctttaagga 1800 gttgtgtcaa aagaagaacg tcgaccctga tgtcgctgcg aaggtggtgg tggcgattat 1860 gaatagtgaa ctgacgttac cgtttaagaa acccacagaa gaggaagttg ctgaggcgct 1920 tagcggagaa gtggtgcagg aggaggggtt gagtttgagc aacaacgcat ccttcccatg 1980 tgtgagtaac ctcaaggaag gtttggttcc ggcgtgtgga ttgtgtccga aaggtgcgaa 2040 cttcgacaga gtggatatgg acatatctga gttccatctc aagagtgtag atgcagttaa 2100 aaagggggct atgatgtcag cggtgtacac gggaaagatc aaggttcaac agatgaagaa 2160 ctacgtcgat tacctaagtg cctcattgtc agctacggtc tcaaacctct gtaaagtgct 2220 tagggatgtt cacggagttg accctgaatc tcaagagaag tcgggtgtgt gggacgtgag 2280 aagaggacgc tggttactta aacctaacgc gaagtgtcac gcttggggtg ttgcggaaga 2340 tgctaaccac aagttagtta tcgtgttact taactgggat gaaggaaaac ctgtctgtga 2400 tcagacgtgg tttagattgg cagtttcaag cgactctttg gtgtactctg atatgggcaa 2460 acttaagacg ttaacatcat gttgcagaga cggtgagcct ccggaaccta cggccaaagt 2520 ggtactcgtt gacggcgttc cgggctgtgg aaaaacaaaa gaaatcttgg agaaggtgaa 2580 cttttccgaa gacttggtgt tagttcctgg gaaagaagcg tcaaaaatga ttattcgaag 2640 agcaaatcag gcaggcgtta caagagctga caaggacaac gtgaggacgg tagattcctt 2700 cttgatgcac cctccaaaaa gggtgttcaa aaggttattt atcgacgaag gattaatgtt 2760 gcacacaggc tgtgttaatt ttttgacgtt gctatctcaa tgtgatgtgg catacgttta 2820 cggcgacaca cagcaaattc cctttatctg tagggttgcg aattttcctt atccctcgca 2880 tttcgcgaag cttgttgttg acgagaagga agatagaagg gtcacgctca ggtgtccagc 2940 agacgttaca cattttttga atacgaggta cgatggatta gtgacgtgta cgagctctgt 3000 ggagaggtcg gttagtgcgg aggttgtaag aggaaaaggt gctttaaacc caataacttt 3060 accgttagag ggaaaaattc tcacctttac gcaagccgat aagtttgagt tgttggataa 3120 gggttacaaa gatgtgaaca cggttcatga agttcagggc gaaacgtacg agaaaacagc 3180 gatcgttcgg ttaacggcaa ctcccttgga gatcatatca agaacgtcac ctcatgtttt 3240 ggtggcgttg acaaggcaca ctactcgatg taaatattac acagttgtgt tggacccaat 3300 ggtgaatgtg atatctgaac tggggaaact gtccaacttt cttctcgata tgtacaaggt 3360 ggagtcggga acccaatagc aattacagat cgacacagtg ttcaaaggga cgaatttgtt 3420 tgtcccgacg cctaagtcag gagattggcg agacatgcag ttctattatg acactcttct 3480 tcccggaaac agtactattc ttaacgaatt cgatgctgtg acgatgaact tgagggatat 3540 ttccttaaat gtcaaggact gtagaatcga cttctcgaaa tctgtgcaag tgccgaaaga 3600 acgaccggtt ttcatgaaac ccaaattgag gacggcggca gagatgccac gtactgctgg 3660 tctacttgaa aacctcgtcg cgatgattaa aagaaacatg aacgcgccag atttgacagg 3720 gacaattgat atagaggaca ctgcgtcgtt agtagttgaa aagttttggg atgcttatgt 3780 ggtgaaagaa ttcagcggaa cagacggaat ggctatgaca agggaaagtt tttctagatg 3840 gctctctaaa caagagtcgt ctacagttgg tcagttagcg gatttcaact ttgtggattt 3900 gccggcggtg gacgagtaca agcatatgat caagagccaa cccaagcaaa ggttagactt 3960 gagcattcaa gatgaatacc ctgcgttgca gactatagtc tatcattcaa aaaagatcaa 4020 tgcgattttt ggtcctatgt tttcagagtt gacgaggatg ctccttgaaa gaatagatac 4080 ttccaagttt ctgttctaca ccaggaagac acctacgcag attgaagagt ttttctctga 4140 tttagactcg tcgcaagcga tggagatttt ggaactcgac atttcaaagt atgacaagtc 4200 acaaaacgag ttccattgcg ctgttgagta caaaatatgg gaaaagcttg gaatcgacga 4260 atggttagcg caggtgtgga gacaaggaca caggagaacg acgctcaagg attacacggc 4320 tggcataaag acatgtttgt ggtaccaaag gaaaagcggt gacgtgacta ccttcatcgg 4380 gaacacaatt atcattgcag cgtgtttgag ttctatgatc ccgatggaca aagtgatcaa 4440 ggcggctttc tgcggtgacg acagtttgat atatattccg aaaggtctag acctgccgga 4500 cattcaagcc ggagccaacc ttacgtggaa cttcgaggcc aaattgttca ggaaaaagta 4560 cgggtatttt tgcggtcgtt acgttattca ccacgataga ggagctattg tatattatga 4620 tccgctcaag ttgatatcta aattaggatg taaacatatc agagatgaag ttcacttaga 4680 agagttgcgt agatctttgt gtgatgtaac tagtaattta aataattgtg cgtatttttc 4740 acagttagat gaggccgttg ccgaggttca taagaccgcg gttggcggag cgttcgttta 4800 ctgtagtata attaaatatt tgtcagataa aaggttgttt aaagatttgt tttttgtttg 4860 actgagtcga taatgtctta cgagcctaaa gttagtgact tccttgctct tacgaaaaag 4920 gaggaaattt tacccaaggc tttaacgaga ttaaagaccg tatctattag tactaaagat 4980 gttatatctg ttaaggagtc tgagtccctg tgtgatattg acttgttagt gaatgtgcca 5040 ttagataagt ataggtatgt gggtgttttg ggtgttgtct ttaccggtga atggctagta 5100 ccggatttcg ttaaaggtgg ggtaacagtg agcgtgattg acaaacgact tgaaaattcc 5160 aaagagtgca taattggtac gtaccgagct gctgcgaagg acagaaggtt ccagttcaag 5220 ctggtcccaa attacttcgt atccactgcg gatgccaagc gaaagccgtg gcaggttcat 5280 gtgcgtattc aaaatctgaa gattgaagct ggatggcaac ctctagctct agaggtggtt 5340 tctgttgcta tggttactaa taacgtggtt gttaagggtt tgagggaaaa ggtcatcgca 5400 gtgaatgatc cgaacgtcga aggtttcgaa ggtgtggttg acgatttcgt cgattcggtt 5460 gctgcattca aggcgattga cagtttcagg aagaaaaaga aaaggatcgg aggaagggat 5520 gtaaataata ataagtatag atatagaccg gagagatacg ccggtcctga ttcgttacaa 5580 tataaggaag aaaatggttt acaacatcac gagctcaaat cagtaccagt atttcgcagc 5640 gatgtgggca gagcccacag cgatgcttaa ccagtgcgtg tctgcgttgt cgcaatcgta 5700 tcagactcag gcggcaagag atactgttag acagcagttc tctaaccttc tgagtgcgat 5760 tgtgacaccg aaccagcggt ttccagaaac aggataccgg gtgtatatta attcagcagt 5820 tctaaaaccg ttgtacgagt ctctcatgaa gtcctttgat actagaaata ggatcattga 5880 aactgaagaa gagtcgcgtc catcggcttc cgaagtagct aatgcaacac aacgtgttga 5940 tgatgcgacc gtggccatca ggagtcaaat tcagcttttg ctgaacgagc tctccaacgg 6000 acatggtctg atgaacaggg cagagttcga ggttttatta ccttgggcta ctgcgccagc 6060 tacataggcg tggtgcacac gatagtgcat agtgtttttc tctccactta aatcgaagag 6120 atatacttac ggtgtaattc cgcaagggtg gcgtaaacca aattacgcaa tgttttaggt 6180 tccattcaaa tcgaaacctg ttatttcctg gatcacctgt taacgtacgc gtggcgtata 6240 tcacagtggg aataactaaa agtgagaggt tcgaatcctc cctaaccccg ggtaggggcc 6300 ca 6302 //