Dbfetch
ID DQ196318; SV 1; linear; genomic DNA; STD; VRL; 4787 BP. XX AC DQ196318; XX DT 28-MAY-2006 (Rel. 87, Created) DT 28-MAY-2006 (Rel. 87, Last updated, Version 1) XX DE Mouse parvovirus 3, complete genome. XX KW . XX OS Mouse parvovirus 3 OC Viruses; Parvoviridae; Parvovirinae; Protoparvovirus. XX RN [1] RP 1-4787 RX DOI; 10.1099/vir.0.81547-0. RX PUBMED; 16690918. RA Besselsen D.G., Romero M.J., Wagner A.M., Henderson K.S., Livingston R.S.; RT "Identification of novel murine parvovirus strains by epidemiological RT analysis of naturally infected mice"; RL J. Gen. Virol. 87(Pt 6):1543-1556(2006). XX RN [2] RP 1-4787 RA Besselsen D.G., Romero M.J., Wagner A.M.; RT ; RL Submitted (07-SEP-2005) to the INSDC. RL University Animal Care, University of Arizona, 1127 East Lowell St, Tucson, RL AZ 85721-0101, USA XX DR MD5; 7335b6a2b8ca3fe0d4a9816e9e372296. DR EuropePMC; PMC3838256; 24109231. XX FH Key Location/Qualifiers FH FT source 1..4787 FT /organism="Mouse parvovirus 3" FT /mol_type="genomic DNA" FT /country="USA" FT /isolation_source="tissues obtained from a naturally FT infected mouse" FT /note="type: 3" FT /db_xref="taxon:344970" FT CDS join(159..412,1888..2178,2297..2345) FT /codon_start=1 FT /product="NS2 rare" FT /note="minor non-structural protein rare isoform" FT /db_xref="UniProtKB/TrEMBL:Q1AE14" FT /protein_id="ABB01357.1" FT /translation="MAGNAYSDEVLGTTNWLKEKSNQEVFSFVFKNEDVQLNGKDIGWN FT NYRKELQEDELKSLQRGAETTWDQSEDMEWESAVDELTKKFGTLTIHDTEKYASQPELC FT TNSTCIGSRGPGFRALEHTKYSCCGHCRNPEHWGSWFQSLPRWSTEPNLVRDRGGFESV FT LRCGTVEERLQRAAELGLRLGTSWLQVPGTREQP" FT CDS join(159..412,1888..2178,2275..2296) FT /codon_start=1 FT /product="NS2 major" FT /note="minor non-structural protein major isoform" FT /db_xref="UniProtKB/TrEMBL:Q1AE13" FT /protein_id="ABB01356.1" FT /translation="MAGNAYSDEVLGTTNWLKEKSNQEVFSFVFKNEDVQLNGKDIGWN FT NYRKELQEDELKSLQRGAETTWDQSEDMEWESAVDELTKKFGTLTIHDTEKYASQPELC FT TNSTCIGSRGPGFRALEHTKYSCCGHCRNPEHWGSWFQSLPRWSTEPNLVRDRGGFESV FT LRCGTVEERLQRAAELGLRPEITWF" FT CDS join(159..412,1888..2200) FT /codon_start=1 FT /product="NS2 minor" FT /note="minor non-structural protein minor isoform" FT /db_xref="UniProtKB/TrEMBL:Q1AE12" FT /protein_id="ABB01358.1" FT /translation="MAGNAYSDEVLGTTNWLKEKSNQEVFSFVFKNEDVQLNGKDIGWN FT NYRKELQEDELKSLQRGAETTWDQSEDMEWESAVDELTKKFGTLTIHDTEKYASQPELC FT TNSTCIGSRGPGFRALEHTKYSCCGHCRNPEHWGSWFQSLPRWSTEPNLVRDRGGFESV FT LRCGTVEERLQRAAELGLRYDGASS" FT CDS 159..2177 FT /codon_start=1 FT /product="NS1" FT /note="major non-structural protein" FT /db_xref="GOA:Q1AE11" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR021076" FT /db_xref="InterPro:IPR021972" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q1AE11" FT /protein_id="ABB01359.1" FT /translation="MAGNAYSDEVLGTTNWLKEKSNQEVFSFVFKNEDVQLNGKDIGWN FT NYRKELQEDELKSLQRGAETTWDQSEDMEWESAVDELTKKQVFIYDSLVKKCLFEVLST FT KNIAPSDVTWFVRHEWGKDQGWHCHVLIGGKDFSQAQGKWWRRQLNVYWSRWLVTACNV FT QLSPAERIKLREIAEDQEWVTLLTYKHKQTKKDYTKCVLFGNIVAYYFLTKKKISTSPP FT RDGDYFLSSDSGWKTNFLKEGERHLVSKLYTDDMRPETVETTVTTAQETKRGRIQTKKE FT VSIKTTLKELVHKRVTSPEDWMMMQPDSYIEMMAQPGGENLLKNTLEICTLTLARTKTA FT FDLILEKAETSKLTNFSLPDTRTCKIFAFHGWNYIKVCHAICCVLNRQGGKRNTVLFHG FT PASTGKSIIAQAIAQAVGNVGCYNAANVNFPFNDCTNKNLIWVEEAGNFGQQVNQFKAI FT CSGQTIRIDQKGKGSKQIEPTPVIMTTNENITVVKIGCEERPEHTQPIRDRMLNIHLTH FT TLPGDFGLVDKHEWPMICAWLVKNGYQSTMASYCAKWGKVPDWTENWAEPKVPTPINSL FT GSARSPFTTPKSTPLSQNYALTPLASDLEDLALEPWSTPNTPVAGTAETQNTGEAGSKA FT CQDGQLSPTWSEIEEDLRACFGAEPLKRDFSEPLNLD" FT CDS join(2184..2214,2297..4464) FT /codon_start=1 FT /product="VP1" FT /db_xref="GOA:Q1AE10" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:Q1AE10" FT /protein_id="ABB01360.1" FT /translation="MAPPAKRAKRGWVPPGYKYLGPGNSLDQGEPTNPSDAAAKEHDEA FT YDQYIKSGKNPYLYFSAADQRFIDQTKDAKDWGGKVGHYFFRVKRAFTSKLPDTDSQPG FT TSTGGVTRAGKRSKPPAHIFVNQARAKKKRASLAAQQRTQTMSDGAEQSDSGNAVQSAA FT RVERAADGPGGSGGGGSGGGGVGVSTGSYDNQTHYRFLTDGWVEITAYSTRIVHLNMPK FT SENYCRVRVHNTNDTQTAGNMAKDDAHEQIWTPWSLIDSNAWGVWFQPSDWQFICNNMS FT HVNLHSLDQELFNVVIKTVTEQNTGAEAIKVYNNDLTASMMVALDSNNILPYTPATDNQ FT ETLGFYPWKPTMPSPYRYYFNCDRSLSVTYAEQTGNIVDTMANASGMSSQFFTIENTQR FT IQLLRTGDEFATGTYYFDTEPIKLSHTWQSNRQLGQPPQITDLPSADNENATLVARGGR FT SGVTQIFGSNDVTEATRVRPAQVGFCQPHDNFETGRAGPFKVPVVPANITQGQDHDANG FT SLRYTYDKQHGQNYASNDNRDRFTWDGISYDSGRWTDRCFIQATPFTSPPALNNILTNS FT DPIGSKTGIHYQQTFNSYGPLSAFPHPAPIYPQGQIWDKELDLEHKPRLHVQAPFVCKN FT NAPGQLLVRLAPNLTDQYDPNSSTLSRIVTYGTFFWKGKLTLKAKLRPNATWNPVYQVS FT AQYQSNNDYMSIHKWLPTATGNMQNVPLLSRPVARNTY" FT CDS 2701..4464 FT /codon_start=1 FT /product="VP2" FT /db_xref="GOA:Q1AE09" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:Q1AE09" FT /protein_id="ABB01361.1" FT /translation="MSDGAEQSDSGNAVQSAARVERAADGPGGSGGGGSGGGGVGVSTG FT SYDNQTHYRFLTDGWVEITAYSTRIVHLNMPKSENYCRVRVHNTNDTQTAGNMAKDDAH FT EQIWTPWSLIDSNAWGVWFQPSDWQFICNNMSHVNLHSLDQELFNVVIKTVTEQNTGAE FT AIKVYNNDLTASMMVALDSNNILPYTPATDNQETLGFYPWKPTMPSPYRYYFNCDRSLS FT VTYAEQTGNIVDTMANASGMSSQFFTIENTQRIQLLRTGDEFATGTYYFDTEPIKLSHT FT WQSNRQLGQPPQITDLPSADNENATLVARGGRSGVTQIFGSNDVTEATRVRPAQVGFCQ FT PHDNFETGRAGPFKVPVVPANITQGQDHDANGSLRYTYDKQHGQNYASNDNRDRFTWDG FT ISYDSGRWTDRCFIQATPFTSPPALNNILTNSDPIGSKTGIHYQQTFNSYGPLSAFPHP FT APIYPQGQIWDKELDLEHKPRLHVQAPFVCKNNAPGQLLVRLAPNLTDQYDPNSSTLSR FT IVTYGTFFWKGKLTLKAKLRPNATWNPVYQVSAQYQSNNDYMSIHKWLPTATGNMQNVP FT LLSRPVARNTY" XX SQ Sequence 4787 BP; 1593 A; 978 C; 1043 G; 1173 T; 0 other; cagttctaaa aatgataagc ggttcaggga gtttaaacca aggcgcgaaa aggaaatggg 60 cgtggtttat ggtatataag caactactga agtcagttac ttatattttc tttcattctg 120 tgagttaaga cgcacagaga gagagcaacc aactaaccat ggctggaaac gcttactctg 180 atgaagtttt aggaacaacc aactggttaa aggaaaaaag taaccaggaa gtgttctcat 240 ttgtttttaa aaatgaagat gttcaactga atggaaaaga tatcggatgg aataattaca 300 gaaaggagct gcaggaggac gagctgaaat ctttacaacg aggagcggaa actacctggg 360 accaaagcga ggacatggaa tgggaatctg cagtggatga actaaccaaa aagcaagtat 420 tcatttatga ctctttagtt aaaaaatgtt tgtttgaagt gctgagtaca aagaacatag 480 ctcctagtga tgttacttgg tttgtacggc atgaatgggg aaaagaccaa ggctggcact 540 gtcatgtgct cattggaggc aaggacttta gccaagctca aggaaaatgg tggagaaggc 600 agttaaatgt ttactggagc agatggttag taacagcctg taatgtgcag ttatcaccag 660 ctgaaagaat taagctgaga gagatagcgg aagaccaaga atgggtcact ttgcttactt 720 ataagcataa gcaaaccaaa aaggactata ccaagtgtgt tctttttgga aatatagttg 780 cttactactt tttaaccaag aagaaaataa gcaccagtcc accaagggac ggagactatt 840 ttctgagcag tgactctggc tggaaaacta actttttaaa agagggcgaa cgccatctag 900 tgagcaaact atacactgat gacatgcgac cagaaacggt tgaaaccaca gtaaccactg 960 cgcaggaaac taagcgcggc agaattcaaa ctaagaaaga ggtctctatt aaaaccacac 1020 ttaaagagct ggtgcataaa agagtaacct caccagaaga ctggatgatg atgcagccag 1080 acagttacat tgaaatgatg gctcaaccag gtggagaaaa cctgctgaaa aatacgctag 1140 agatttgtac actaactcta gccagaacaa aaacagcatt tgacttgatt ttagaaaaag 1200 ctgaaaccag caaactaacc aacttttcac tgccggacac aagaacctgc aagatctttg 1260 cttttcatgg ctggaactat attaaagttt gccatgctat ttgctgtgtt ctaaacagac 1320 aaggaggcaa aagaaatact gttttatttc atggaccagc cagtacaggc aaatccatta 1380 ttgcacaagc catagcacag gcagttggta atgttggttg ctataatgca gcaaatgtga 1440 actttccatt caatgactgc accaacaaaa acctgatttg ggtagaagaa gctggtaact 1500 ttggacagca agtaaaccaa tttaaagcca tttgctctgg tcaaactatt cgcattgatc 1560 aaaaaggaaa aggcagcaaa cagattgaac caacaccagt catcatgacc acaaatgaaa 1620 acattacagt ggtcaaaata ggctgtgaag aaagaccaga acacactcaa ccaatcagag 1680 atagaatgct taacattcat ctaacacata cattgcctgg tgactttggt ttggttgaca 1740 aacatgaatg gcccatgatt tgtgcttggt tggtaaagaa tggttaccaa tctaccatgg 1800 caagctactg tgctaaatgg ggcaaagttc ctgattggac ggaaaactgg gcggagccga 1860 aggtgccgac tcctataaat tcactaggtt cggcacgctc accattcacg acaccgaaaa 1920 gtacgcctct cagccagaac tatgcactaa ctccacttgc atcggatctc gaggacctgg 1980 ctttagagcc ttggagcaca ccaaatactc ctgttgcggg cactgcagaa acccagaaca 2040 ctggggaagc tggttccaaa gcctgccaag atggtcaact gagcccaact tggtcagaga 2100 tcgaggagga tttgagagcg tgcttcggtg cggaaccgtt gaagagagac ttcagcgagc 2160 cgctgaactt ggactaaggt acgatggcgc ctccagctaa aagagctaaa agaggtaagg 2220 gtttaaggga tggttggttg gtggggtatt aatgtttaac tacctgtttt acaggcctga 2280 aatcacttgg ttctaggttg ggtacctcct ggctacaagt acctgggacc agggaacagc 2340 cttgaccaag gagaaccaac caatccatct gacgccgctg ccaaagaaca cgacgaggcc 2400 tacgaccaat acatcaaatc tggaaaaaat ccttacctgt acttctctgc tgctgatcag 2460 cgctttattg accaaaccaa ggacgccaag gactggggcg gcaaggttgg tcactacttc 2520 ttcagagtca aacgcgcttt tacttctaag cttcctgaca ctgactctca acctgggact 2580 tcaactggtg gagtaaccag ggctggtaaa aggtctaaac caccagcaca catatttgta 2640 aaccaagcca gggctaaaaa aaaacgcgct tctcttgctg ctcaacagag aactcagaca 2700 atgagtgatg gcgccgagca atctgacagc ggaaacgctg tccagtcagc tgctagagtt 2760 gagcgagcgg ctgacggtcc tggaggttct gggggtgggg gctctggcgg gggtggggtt 2820 ggcgtttcta ctgggagtta tgataatcag acgcattata ggtttttaac tgatggttgg 2880 gtagaaatta ctgcttacag cacacgcata gtacatttaa atatgcctaa atcagaaaac 2940 tattgcagag tgcgcgtgca caacacaaat gacacacaaa cagcaggaaa catggcaaaa 3000 gatgatgctc atgaacaaat ttggacacca tggagcttaa ttgattctaa tgcttgggga 3060 gtttggtttc aaccaagtga ctggcagttt atttgtaaca acatgagtca tgtaaatttg 3120 cactcacttg atcaagagct gtttaatgtg gtcattaaaa cagttactga acaaaacaca 3180 ggagctgaag ccatcaaggt atacaacaat gaccttactg cttcaatgat ggttgctctt 3240 gattctaaca acatactgcc ttacacacct gcaacagaca accaagaaac acttggtttt 3300 tatccttgga aaccaaccat gccaagtcct tacaggtact atttcaactg tgacagatct 3360 ttgtcagtga cttacgcaga acaaacagga aacattgttg acacaatggc taatgccagc 3420 ggaatgagct ctcaattttt taccattgag aacactcaac gcattcagct gcttagaact 3480 ggtgatgaat ttgctactgg aacttactat tttgacacag aaccaatcaa actttctcac 3540 acatggcaat caaacaggca gctgggtcag cctccacaaa ttactgactt accaagtgct 3600 gacaacgaaa atgctacttt agtagctaga ggtggcagat caggtgtgac ccagattttt 3660 ggcagcaatg atgtaactga agctactaga gtaaggccgg cacaagttgg attttgtcaa 3720 cctcatgaca attttgaaac tggcagagca ggtcctttta aggttccagt agtgccagca 3780 aacatcacac aaggccaaga ccatgacgcc aatggcagcc taagatacac atatgacaaa 3840 cagcacggtc aaaactatgc aagcaatgac aacagagaca gatttacttg ggatggtatt 3900 agctatgatt caggcagatg gactgacaga tgctttattc aggcaacacc atttacatca 3960 ccaccagctc ttaacaacat actaacaaac tcagacccca ttggaagcaa aactggcata 4020 cattatcaac aaacatttaa cagctatgga ccactaagtg cttttccaca tcctgcgccg 4080 atttatccac aagggcaaat ttgggacaaa gaacttgatc ttgaacacaa accaagactt 4140 cacgtacaag ctccttttgt ttgcaagaac aatgctccag gtcaacttct agttagactt 4200 gcaccaaacc ttactgacca gtatgatcct aacagtagca ctctttctag aattgtaact 4260 tatggcacat ttttctggaa aggaaaacta accctaaaag caaaacttag acctaatgct 4320 acttggaacc cagtttacca agtaagtgct caataccaat ctaacaatga ctacatgagc 4380 atccacaaat ggctgccaac tgctactggc aacatgcaga atgtaccttt gctttctaga 4440 cctgttgcta gaaatactta ctaaccaacc atgttctttc tttctgtact tcatatatta 4500 ttaagactaa taaaaataca acatagaaat ataatattac atatagattt aagaaataga 4560 ataatatggt actcgctaac tgttagaaat aatagaactt ttggaataac aagatagtta 4620 gttacttaat gttagataga ataagaagat gatgtacaat aaacaaatag ttagttggtt 4680 aatgttaagt agcataagaa gattatgtat aatgggtaaa agggtggaag ggtggttggg 4740 ttggtattcc cttagacttg atgttaagga ccaaaaaaac aataaaa 4787 //